; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G22810 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G22810
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRRM domain-containing protein
Genome locationClcChr05:30971468..30971746
RNA-Seq ExpressionClc05G22810
SyntenyClc05G22810
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0043130 - ubiquitin binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064439.1 uncharacterized protein E6C27_scaffold255G001510 [Cucumis melo var. makuwa]3.1e-3086.25Show/hide
Query:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
        KDIFQIVDKEAL+IQDSADVFTELKQ YTDENILPVIKLSKLRAISLLW+FFHYPKNLAAACFELFNM+AE + + G  F
Subjt:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
XP_004141403.1 uncharacterized protein LOC101209442 [Cucumis sativus]8.9e-3085Show/hide
Query:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
        KDIFQIVDKEAL++QDSADVFTELKQ YTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFE FNM+AE + + G  F
Subjt:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
XP_016901291.1 PREDICTED: uncharacterized protein LOC103493893 [Cucumis melo]3.1e-3086.25Show/hide
Query:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
        KDIFQIVDKEAL+IQDSADVFTELKQ YTDENILPVIKLSKLRAISLLW+FFHYPKNLAAACFELFNM+AE + + G  F
Subjt:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
XP_022140294.1 uncharacterized protein LOC111010994 [Momordica charantia]1.5e-2986.25Show/hide
Query:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
        KDIFQIVDKEALKIQDS DVFTELKQ YTDENILPV+KLSKLRAISLLWLFFHYPKNLAAACFELFNMS E + + G  F
Subjt:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
XP_038897590.1 uncharacterized protein LOC120085597 [Benincasa hispida]8.1e-3188.75Show/hide
Query:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
        KDIFQIVDKEALKIQDSADVFTELKQ YTDENILPVI+LSKLRAISLLWLFFHYPKNLAAACFELFNMSAE + + G  F
Subjt:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
TrEMBL top hitse value%identityAlignment
A0A0A0L3T0 SPOC domain-containing protein4.3e-3085Show/hide
Query:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
        KDIFQIVDKEAL++QDSADVFTELKQ YTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFE FNM+AE + + G  F
Subjt:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
A0A1S4DZ72 uncharacterized protein LOC1034938931.5e-3086.25Show/hide
Query:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
        KDIFQIVDKEAL+IQDSADVFTELKQ YTDENILPVIKLSKLRAISLLW+FFHYPKNLAAACFELFNM+AE + + G  F
Subjt:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
A0A5D3D9I2 SPOC domain-containing protein1.5e-3086.25Show/hide
Query:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
        KDIFQIVDKEAL+IQDSADVFTELKQ YTDENILPVIKLSKLRAISLLW+FFHYPKNLAAACFELFNM+AE + + G  F
Subjt:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
A0A6J1CFA8 uncharacterized protein LOC1110109947.4e-3086.25Show/hide
Query:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
        KDIFQIVDKEALKIQDS DVFTELKQ YTDENILPV+KLSKLRAISLLWLFFHYPKNLAAACFELFNMS E + + G  F
Subjt:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
A0A6J1FRD2 uncharacterized protein LOC1114462201.4e-2883.75Show/hide
Query:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
        KDIFQIVD+EALKIQDSAD FTELKQ YTDEN LPVIKLSKLRAIS LWLFFHYPKNL AACFELFNMSAE + + G  F
Subjt:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27750.1 nucleic acid binding6.0e-1650.65Show/hide
Query:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTG
        K+IFQIVDK  LK+QD  ++F++L Q  +D N LP+IKLS+ R ++LL +FF++PK   A CF  FN S+ E   TG
Subjt:  KDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTCACCTTCTTTGTGTCATCTTTTGAGGGAGAAAGATATATTTCAGATTGTAGATAAAGAAGCTCTTAAAATTCAAGATTCTGCAGATGTTTTCACTGAGTTAAA
GCAGAATTATACTGATGAAAATATTTTGCCTGTGATTAAACTATCCAAGTTACGTGCTATCAGTCTCCTCTGGCTATTTTTTCATTACCCTAAAAACTTAGCTGCAGCTT
GTTTTGAGCTTTTCAATATGTCTGCTGAGGAACTCACAAGGACGGGCAGTATTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTCACCTTCTTTGTGTCATCTTTTGAGGGAGAAAGATATATTTCAGATTGTAGATAAAGAAGCTCTTAAAATTCAAGATTCTGCAGATGTTTTCACTGAGTTAAA
GCAGAATTATACTGATGAAAATATTTTGCCTGTGATTAAACTATCCAAGTTACGTGCTATCAGTCTCCTCTGGCTATTTTTTCATTACCCTAAAAACTTAGCTGCAGCTT
GTTTTGAGCTTTTCAATATGTCTGCTGAGGAACTCACAAGGACGGGCAGTATTTTCTAA
Protein sequenceShow/hide protein sequence
MFSPSLCHLLREKDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEELTRTGSIF