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Clc05G23460 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G23460
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr05:31509914..31512669
RNA-Seq ExpressionClc05G23460
SyntenyClc05G23460
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648853.1 hypothetical protein Csa_008932 [Cucumis sativus]1.8e-2566.95Show/hide
Query:  MALRHVPLLFF---LLTLDSSSTIMATSRAMLGITPTPTTSAEVPTPTIDAKPSPPES-SEATFIARSDSSI--SMPPSFGDFVAFEVPSEIG-ANPPMP
        MALRH PLLFF   +L L SSST MATSRAML I          PTPTIDAKPSPP + SEAT +A   SS+  SMPPSFGDFVAFEVPSE+  ANPPMP
Subjt:  MALRHVPLLFF---LLTLDSSSTIMATSRAMLGITPTPTTSAEVPTPTIDAKPSPPES-SEATFIARSDSSI--SMPPSFGDFVAFEVPSEIG-ANPPMP

Query:  NWVIRSCKPKGRMRLGQD
        +W+IRSCKPKGRMR  ++
Subjt:  NWVIRSCKPKGRMRLGQD
KAG6573847.1 hypothetical protein SDJN03_27734, partial [Cucurbita argyrosperma subsp. sororia]5.4e-0945.87Show/hide
Query:  MATSRAMLGI-----------TPTPTTSAEVPTP-----TIDAKPSPPESSEATFIARSDSSISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGR
        MATSRAML +           +P+  +   +PTP     T D + S P + EAT +  S S+I M P+  DFVAFEVP+ + A PPM N VIRSCKPKGR
Subjt:  MATSRAMLGI-----------TPTPTTSAEVPTP-----TIDAKPSPPESSEATFIARSDSSISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGR

Query:  MRLGQDPSR
        MR      R
Subjt:  MRLGQDPSR
TYK09256.1 hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa]2.8e-2660Show/hide
Query:  MALRHVPLLFFL---LTLDSSSTIMATSRAMLGITPTPTTSAEVPTPTIDAKP--SPPESSEATFIAR-SDSSISMPPSFGDFVAFEVPSEIGANPPMPN
        MAL   PLLFFL   L L SSST MATSRAML I PTPT S + PT  +DAKP  S P  SEAT +A    SS SMPPSFGDFVAFEVPSE+ ANPP P+
Subjt:  MALRHVPLLFFL---LTLDSSSTIMATSRAMLGITPTPTTSAEVPTPTIDAKP--SPPESSEATFIAR-SDSSISMPPSFGDFVAFEVPSEIGANPPMPN

Query:  WVIRSCKPKGRMRLGQDPSRVRPSQTYSEAPTNLT
        W+IRSCKPKGRMR      R       S   +N++
Subjt:  WVIRSCKPKGRMRLGQDPSRVRPSQTYSEAPTNLT
TrEMBL top hitse value%identityAlignment
A0A0A0KRI3 Uncharacterized protein6.2e-1958.93Show/hide
Query:  MATSRAMLGITPTPTTSAEVPTPTIDAKPSPPES-SEATFIARSDSSI--SMPPSFGDFVAFEVPSEIG-ANPPMPNWVIRSCKPKGRMRLGQDPSRVRP
        MATSRAML I          PTPTIDAKPSPP + SEAT +A   SS+  SMPPSFGDFVAFEVPSE+  ANPPMP+W+IRSCKPKGRMR      R   
Subjt:  MATSRAMLGITPTPTTSAEVPTPTIDAKPSPPES-SEATFIARSDSSI--SMPPSFGDFVAFEVPSEIG-ANPPMPNWVIRSCKPKGRMRLGQDPSRVRP

Query:  SQTYSEAPTNLT
            S   +N++
Subjt:  SQTYSEAPTNLT
A0A5D3CFX3 Uncharacterized protein1.4e-2660Show/hide
Query:  MALRHVPLLFFL---LTLDSSSTIMATSRAMLGITPTPTTSAEVPTPTIDAKP--SPPESSEATFIAR-SDSSISMPPSFGDFVAFEVPSEIGANPPMPN
        MAL   PLLFFL   L L SSST MATSRAML I PTPT S + PT  +DAKP  S P  SEAT +A    SS SMPPSFGDFVAFEVPSE+ ANPP P+
Subjt:  MALRHVPLLFFL---LTLDSSSTIMATSRAMLGITPTPTTSAEVPTPTIDAKP--SPPESSEATFIAR-SDSSISMPPSFGDFVAFEVPSEIGANPPMPN

Query:  WVIRSCKPKGRMRLGQDPSRVRPSQTYSEAPTNLT
        W+IRSCKPKGRMR      R       S   +N++
Subjt:  WVIRSCKPKGRMRLGQDPSRVRPSQTYSEAPTNLT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTACGACATGTTCCTCTTCTCTTCTTCCTTTTAACTTTGGATTCTTCTTCTACAATTATGGCAACGTCAAGAGCCATGCTTGGCATAACACCTACTCCAACCAC
GTCTGCTGAAGTACCTACTCCCACAATTGATGCAAAACCTTCACCACCAGAGTCATCTGAAGCTACGTTCATTGCAAGATCTGACTCGTCAATTTCCATGCCTCCAAGTT
TTGGTGACTTTGTTGCTTTTGAGGTTCCTAGTGAAATAGGAGCAAATCCACCAATGCCTAATTGGGTCATTCGAAGTTGTAAGCCTAAAGGTCGAATGAGGCTTGGTCAA
GACCCGTCCAGAGTAAGACCAAGCCAAACTTACTCCGAGGCGCCCACCAATCTCACCCCGACCAAGGCAAAGACCAGGCCAACATCCTCCTATAGTGTTAGGCCCGGTCA
AGACTGGCTCAAGGCCAAAAAACAGAGAGTTCCCCAACTATCTCACCTGGTCTGTACCCGACCAGGGAAAGGACTAGGCGTACGCTTCCCCCAGTCTATACCCGATGAGG
GTTGGGACCGGGAGCCACTTTCGTCTTCCCCAAAGTTACACCCGACCAATATCCGGTTGTCTTCTGATGAAGCCCGATCAAGTATTCATCGATTTTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTACGACATGTTCCTCTTCTCTTCTTCCTTTTAACTTTGGATTCTTCTTCTACAATTATGGCAACGTCAAGAGCCATGCTTGGCATAACACCTACTCCAACCAC
GTCTGCTGAAGTACCTACTCCCACAATTGATGCAAAACCTTCACCACCAGAGTCATCTGAAGCTACGTTCATTGCAAGATCTGACTCGTCAATTTCCATGCCTCCAAGTT
TTGGTGACTTTGTTGCTTTTGAGGTTCCTAGTGAAATAGGAGCAAATCCACCAATGCCTAATTGGGTCATTCGAAGTTGTAAGCCTAAAGGTCGAATGAGGCTTGGTCAA
GACCCGTCCAGAGTAAGACCAAGCCAAACTTACTCCGAGGCGCCCACCAATCTCACCCCGACCAAGGCAAAGACCAGGCCAACATCCTCCTATAGTGTTAGGCCCGGTCA
AGACTGGCTCAAGGCCAAAAAACAGAGAGTTCCCCAACTATCTCACCTGGTCTGTACCCGACCAGGGAAAGGACTAGGCGTACGCTTCCCCCAGTCTATACCCGATGAGG
GTTGGGACCGGGAGCCACTTTCGTCTTCCCCAAAGTTACACCCGACCAATATCCGGTTGTCTTCTGATGAAGCCCGATCAAGTATTCATCGATTTTCATAA
Protein sequenceShow/hide protein sequence
MALRHVPLLFFLLTLDSSSTIMATSRAMLGITPTPTTSAEVPTPTIDAKPSPPESSEATFIARSDSSISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGRMRLGQ
DPSRVRPSQTYSEAPTNLTPTKAKTRPTSSYSVRPGQDWLKAKKQRVPQLSHLVCTRPGKGLGVRFPQSIPDEGWDREPLSSSPKLHPTNIRLSSDEARSSIHRFS