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Clc05G23740 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G23740
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptioncyclin-dependent protein kinase inhibitor SMR1-like
Genome locationClcChr05:31761470..31761847
RNA-Seq ExpressionClc05G23740
SyntenyClc05G23740
Gene Ontology termsGO:0032875 - regulation of DNA endoreduplication (biological process)
GO:0045839 - negative regulation of mitotic nuclear division (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR040389 - Cyclin-dependent protein kinase inhibitor SMR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008446800.1 PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo]1.7e-5284.21Show/hide
Query:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTS--MSADHGGVIIQKDRIDD------EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVE
        MST+LDLRRTLLEIVRRP I LQIP PST+  M  D GGVIIQKDRID       EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVE
Subjt:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTS--MSADHGGVIIQKDRIDD------EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVE

Query:  IVNREEIEPYLRSSFDHEDRVRKSAKRSFCECK
        IV+R+EIEPYL +SFDHEDRVRKSAKRSFCECK
Subjt:  IVNREEIEPYLRSSFDHEDRVRKSAKRSFCECK

XP_022957068.1 cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita moschata]6.0e-5383.08Show/hide
Query:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQKDRIDD-----EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVN
        MSTDLDLRRTLLE+VRRPAI LQIPRP +SM+ADHGGVIIQK+RID+     EELCCRTPTSAENKIP V+QCPPAPRKRKRPP+CRRRL+ELEFVEIV+
Subjt:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQKDRIDD-----EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVN

Query:  REEIEPYLRSSFDHEDRVRKSAKRSFCECK
        REEIEPY  SSFDHE+RV+KSAK SFCECK
Subjt:  REEIEPYLRSSFDHEDRVRKSAKRSFCECK

XP_022992922.1 cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita maxima]1.6e-5383.85Show/hide
Query:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQKDRID-----DEELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVN
        MSTDLDLRRTLLE+VRRPAI LQIPRP +SM+ADHGGVIIQK+RID     DEELCCRTPTSAENKIP V+QCPPAPRKRKRPP+CRRRL+ELEFVEIV+
Subjt:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQKDRID-----DEELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVN

Query:  REEIEPYLRSSFDHEDRVRKSAKRSFCECK
        REEIEPY  SSFDHE+RV+KSAK SFCECK
Subjt:  REEIEPYLRSSFDHEDRVRKSAKRSFCECK

XP_023531359.1 cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita pepo subsp. pepo]6.6e-5282.31Show/hide
Query:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQKDRIDD-----EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVN
        MSTDLDLRRTLLE+VRRPAI LQIPRP +SM+ADHGGVIIQK+R D      EELCCRTPTSAENKIP V+QCPPAPRKRKRPP+CRRRL+ELEFVEIV+
Subjt:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQKDRIDD-----EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVN

Query:  REEIEPYLRSSFDHEDRVRKSAKRSFCECK
        REEIEPY  SSFDHE+RV+KSAK SFCECK
Subjt:  REEIEPYLRSSFDHEDRVRKSAKRSFCECK

XP_038893025.1 cyclin-dependent protein kinase inhibitor SMR1-like [Benincasa hispida]3.6e-5893.7Show/hide
Query:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQKDRIDD--EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVNREE
        MSTDLDLRRTLLEIVRRP I LQIP PSTSM+ DHGGVIIQKDRI D  EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVNREE
Subjt:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQKDRIDD--EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVNREE

Query:  IEPYLRSSFDHEDRVRKSAKRSFCECK
        IEPYLRSSFDHEDRVRKSAKRSFCECK
Subjt:  IEPYLRSSFDHEDRVRKSAKRSFCECK

TrEMBL top hitse value%identityAlignment
A0A0A0KRI0 Uncharacterized protein4.2e-5282.84Show/hide
Query:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMS----ADHGGVIIQKDRIDD-----EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFV
        MST+LDLRRTLLEIVRRP I LQIP P+TS S     DHGGVIIQKDR+D+     EEL CRTPTSAENKIPAV QCPPAPRKRKRPPSCRRRLMELEFV
Subjt:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMS----ADHGGVIIQKDRIDD-----EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFV

Query:  EIVNREEIEPYLRSSFDHEDRVRKSAKRSFCECK
        EIV+R+EIEPYL SSFDHEDRVRKSAKRSFCECK
Subjt:  EIVNREEIEPYLRSSFDHEDRVRKSAKRSFCECK

A0A1S3BFF9 cyclin-dependent protein kinase inhibitor SMR1-like8.4e-5384.21Show/hide
Query:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTS--MSADHGGVIIQKDRIDD------EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVE
        MST+LDLRRTLLEIVRRP I LQIP PST+  M  D GGVIIQKDRID       EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVE
Subjt:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTS--MSADHGGVIIQKDRIDD------EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVE

Query:  IVNREEIEPYLRSSFDHEDRVRKSAKRSFCECK
        IV+R+EIEPYL +SFDHEDRVRKSAKRSFCECK
Subjt:  IVNREEIEPYLRSSFDHEDRVRKSAKRSFCECK

A0A5D3CD68 Cyclin-dependent protein kinase inhibitor SMR1-like8.4e-5384.21Show/hide
Query:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTS--MSADHGGVIIQKDRIDD------EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVE
        MST+LDLRRTLLEIVRRP I LQIP PST+  M  D GGVIIQKDRID       EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVE
Subjt:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTS--MSADHGGVIIQKDRIDD------EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVE

Query:  IVNREEIEPYLRSSFDHEDRVRKSAKRSFCECK
        IV+R+EIEPYL +SFDHEDRVRKSAKRSFCECK
Subjt:  IVNREEIEPYLRSSFDHEDRVRKSAKRSFCECK

A0A6J1GZ63 cyclin-dependent protein kinase inhibitor SMR1-like2.9e-5383.08Show/hide
Query:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQKDRIDD-----EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVN
        MSTDLDLRRTLLE+VRRPAI LQIPRP +SM+ADHGGVIIQK+RID+     EELCCRTPTSAENKIP V+QCPPAPRKRKRPP+CRRRL+ELEFVEIV+
Subjt:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQKDRIDD-----EELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVN

Query:  REEIEPYLRSSFDHEDRVRKSAKRSFCECK
        REEIEPY  SSFDHE+RV+KSAK SFCECK
Subjt:  REEIEPYLRSSFDHEDRVRKSAKRSFCECK

A0A6J1JRA3 cyclin-dependent protein kinase inhibitor SMR1-like7.6e-5483.85Show/hide
Query:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQKDRID-----DEELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVN
        MSTDLDLRRTLLE+VRRPAI LQIPRP +SM+ADHGGVIIQK+RID     DEELCCRTPTSAENKIP V+QCPPAPRKRKRPP+CRRRL+ELEFVEIV+
Subjt:  MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQKDRID-----DEELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVN

Query:  REEIEPYLRSSFDHEDRVRKSAKRSFCECK
        REEIEPY  SSFDHE+RV+KSAK SFCECK
Subjt:  REEIEPYLRSSFDHEDRVRKSAKRSFCECK

SwissProt top hitse value%identityAlignment
Q29Q81 Cyclin-dependent protein kinase inhibitor SMR61.7e-0544.68Show/hide
Query:  IQKDRIDDEELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLM
        +++D  ++EE C  TPT+ E KIP +++CPPAPRKR+    CR  ++
Subjt:  IQKDRIDDEELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLM

Q9LPP4 Cyclin-dependent protein kinase inhibitor SMR13.6e-0839.39Show/hide
Query:  QKDRIDDEE--LCCRTPTSAENKIPAVVQCPPAPRKRKRPP-------------SCRRRLMELEFVEIVNREEIEPYLRSSFDHEDRVRKSAKRSFCEC
        +KD  DD+E  L C TPTS E+KIPAVV  PP P ++ RPP             SC+R+L+      I+NREEI+ +  S ++      K  +RS+  C
Subjt:  QKDRIDDEE--LCCRTPTSAENKIPAVVQCPPAPRKRKRPP-------------SCRRRLMELEFVEIVNREEIEPYLRSSFDHEDRVRKSAKRSFCEC

Arabidopsis top hitse value%identityAlignment
AT1G60783.1 unknown protein1.1e-0458.06Show/hide
Query:  DDEELCCRTPTSAENKIPAVVQCPPAPRKRK
        +DE+LC  TPT+   +IP V+ CPPAP+KRK
Subjt:  DDEELCCRTPTSAENKIPAVVQCPPAPRKRK

AT2G37610.1 unknown protein7.2e-0443.14Show/hide
Query:  QKDRIDDEELCCRTPTSAENKIPAVVQCPPAPRKRK------RPPSCRRRL
        +++ +++E    +TPT  EN+IP V +CPPAP KR       R   CRRRL
Subjt:  QKDRIDDEELCCRTPTSAENKIPAVVQCPPAPRKRK------RPPSCRRRL

AT3G10525.1 LOSS OF GIANT CELLS FROM ORGANS2.5e-0939.39Show/hide
Query:  QKDRIDDEE--LCCRTPTSAENKIPAVVQCPPAPRKRKRPP-------------SCRRRLMELEFVEIVNREEIEPYLRSSFDHEDRVRKSAKRSFCEC
        +KD  DD+E  L C TPTS E+KIPAVV  PP P ++ RPP             SC+R+L+      I+NREEI+ +  S ++      K  +RS+  C
Subjt:  QKDRIDDEE--LCCRTPTSAENKIPAVVQCPPAPRKRKRPP-------------SCRRRLMELEFVEIVNREEIEPYLRSSFDHEDRVRKSAKRSFCEC

AT5G02420.1 unknown protein1.1e-0435.29Show/hide
Query:  EIVRRPAINLQIP-RPSTSM-SADHGGVIIQKDRIDDEELCCRTPTSAENKIPAV--VQCPPAPRKRK--RPPSCRRRLMELEFVEIVNR------EEIE
        EI       +++P RP   +  +DH      +D   +EE  C+TPTS+++KIP V    CPPAPRK K  R    +R+L     V +VNR       EIE
Subjt:  EIVRRPAINLQIP-RPSTSM-SADHGGVIIQKDRIDDEELCCRTPTSAENKIPAV--VQCPPAPRKRK--RPPSCRRRLMELEFVEIVNR------EEIE

Query:  PYLRSSFDHEDRVRKSAKR
         +     D + R++KS K+
Subjt:  PYLRSSFDHEDRVRKSAKR

AT5G40460.1 unknown protein1.2e-0644.68Show/hide
Query:  IQKDRIDDEELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLM
        +++D  ++EE C  TPT+ E KIP +++CPPAPRKR+    CR  ++
Subjt:  IQKDRIDDEELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACAGACCTCGATCTCCGACGGACATTGCTGGAAATCGTCCGCCGTCCGGCGATCAACCTTCAAATTCCACGGCCGTCGACTTCAATGAGCGCCGATCACGGCGG
TGTGATAATTCAGAAAGACAGAATCGACGACGAAGAATTATGTTGCCGTACACCGACGTCGGCAGAGAACAAGATTCCGGCGGTGGTGCAATGTCCGCCGGCGCCACGTA
AGCGGAAGAGACCGCCGAGTTGTAGAAGAAGATTAATGGAGCTTGAATTTGTGGAGATCGTGAATAGAGAAGAAATCGAACCGTATTTAAGATCAAGTTTCGATCACGAA
GACAGAGTAAGAAAATCAGCTAAAAGAAGCTTTTGCGAGTGTAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCACAGACCTCGATCTCCGACGGACATTGCTGGAAATCGTCCGCCGTCCGGCGATCAACCTTCAAATTCCACGGCCGTCGACTTCAATGAGCGCCGATCACGGCGG
TGTGATAATTCAGAAAGACAGAATCGACGACGAAGAATTATGTTGCCGTACACCGACGTCGGCAGAGAACAAGATTCCGGCGGTGGTGCAATGTCCGCCGGCGCCACGTA
AGCGGAAGAGACCGCCGAGTTGTAGAAGAAGATTAATGGAGCTTGAATTTGTGGAGATCGTGAATAGAGAAGAAATCGAACCGTATTTAAGATCAAGTTTCGATCACGAA
GACAGAGTAAGAAAATCAGCTAAAAGAAGCTTTTGCGAGTGTAAATGA
Protein sequenceShow/hide protein sequence
MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQKDRIDDEELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVNREEIEPYLRSSFDHE
DRVRKSAKRSFCECK