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Clc05G23930 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G23930
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRAB6-interacting golgin
Genome locationClcChr05:32020791..32022524
RNA-Seq ExpressionClc05G23930
SyntenyClc05G23930
Gene Ontology termsGO:0005794 - Golgi apparatus (cellular component)
InterPro domainsIPR007033 - RAB6-interacting golgin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034665.1 uncharacterized protein E6C27_scaffold65G006840 [Cucumis melo var. makuwa]2.2e-6388.82Show/hide
Query:  MTSKNGGEGNGERVLTEGSNDRSEDK-MSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKREL
        MTSKNGG GNG+RVL EGSNDR+ED+ +SKLT+STLQA EEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVG VRKRIDTVKREL
Subjt:  MTSKNGGEGNGERVLTEGSNDRSEDK-MSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKREL

Query:  KSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN
        KSLGQICQKKE+EYKEVQ++F EKSNEKAQLLATLME    SEKWRMKKLEELNKNIESTN
Subjt:  KSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN

XP_004150485.1 uncharacterized protein LOC101217540 [Cucumis sativus]5.1e-6589.44Show/hide
Query:  MTSKNGGEGNGERVLTEGSNDRSEDK-MSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKREL
        MTSKNGG GN +RVL EGSNDR+ED+ +SKLT+STLQA EEEIERKKMEVKEKVE QLTRAEEEAKRLAQIWEELEVMGDPMGKEVG VRKRIDTVKREL
Subjt:  MTSKNGGEGNGERVLTEGSNDRSEDK-MSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKREL

Query:  KSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN
        KSLGQICQKKE+EYKEVQ++F EKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES N
Subjt:  KSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN

XP_008446775.1 PREDICTED: uncharacterized protein LOC103489402 [Cucumis melo]2.5e-6791.3Show/hide
Query:  MTSKNGGEGNGERVLTEGSNDRSEDK-MSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKREL
        MTSKNGG GNG+RVL EGSNDR+ED+ +SKLT+STLQA EEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVG VRKRIDTVKREL
Subjt:  MTSKNGGEGNGERVLTEGSNDRSEDK-MSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKREL

Query:  KSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN
        KSLGQICQKKE+EYKEVQ++F EKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN
Subjt:  KSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN

XP_022968566.1 uncharacterized protein LOC111467754 isoform X1 [Cucurbita maxima]1.5e-5680.25Show/hide
Query:  MTSKNGGEGNGERVLTEGSNDRSED-KMSK-LTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRE
        MTSK+G EGNGER+++EGS  R ED +M K LT+STLQA EEEIER+KMEVKEKVE QL+RAEEEAKRLAQIWEELEVMGDPMGKEVG VRKRIDT K+E
Subjt:  MTSKNGGEGNGERVLTEGSNDRSED-KMSK-LTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRE

Query:  LKSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN
        LKSLGQICQKKE+EYKEV E+F EK+NEKAQLL TLMELL QSE+WRM KLEELNK+I  TN
Subjt:  LKSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN

XP_038892385.1 uncharacterized protein LOC120081508 [Benincasa hispida]2.1e-5885.09Show/hide
Query:  MTSKNGGEGNGERVLTEGSNDRSEDK-MSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKREL
        MTSKNG           G NDR+ED+ MSKLTISTLQA EEEIE+KKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPM KEVG VRKRIDTVKREL
Subjt:  MTSKNGGEGNGERVLTEGSNDRSEDK-MSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKREL

Query:  KSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN
        KSLGQICQKKE+E KEVQ++F EKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN
Subjt:  KSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN

TrEMBL top hitse value%identityAlignment
A0A0A0KTG1 RAB6-interacting golgin2.5e-6589.44Show/hide
Query:  MTSKNGGEGNGERVLTEGSNDRSEDK-MSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKREL
        MTSKNGG GN +RVL EGSNDR+ED+ +SKLT+STLQA EEEIERKKMEVKEKVE QLTRAEEEAKRLAQIWEELEVMGDPMGKEVG VRKRIDTVKREL
Subjt:  MTSKNGGEGNGERVLTEGSNDRSEDK-MSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKREL

Query:  KSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN
        KSLGQICQKKE+EYKEVQ++F EKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES N
Subjt:  KSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN

A0A1S3BFW5 RAB6-interacting golgin1.2e-6791.3Show/hide
Query:  MTSKNGGEGNGERVLTEGSNDRSEDK-MSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKREL
        MTSKNGG GNG+RVL EGSNDR+ED+ +SKLT+STLQA EEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVG VRKRIDTVKREL
Subjt:  MTSKNGGEGNGERVLTEGSNDRSEDK-MSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKREL

Query:  KSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN
        KSLGQICQKKE+EYKEVQ++F EKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN
Subjt:  KSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN

A0A5D3CFS0 RAB6-interacting golgin1.0e-6388.82Show/hide
Query:  MTSKNGGEGNGERVLTEGSNDRSEDK-MSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKREL
        MTSKNGG GNG+RVL EGSNDR+ED+ +SKLT+STLQA EEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVG VRKRIDTVKREL
Subjt:  MTSKNGGEGNGERVLTEGSNDRSEDK-MSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKREL

Query:  KSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN
        KSLGQICQKKE+EYKEVQ++F EKSNEKAQLLATLME    SEKWRMKKLEELNKNIESTN
Subjt:  KSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN

A0A6J1D8N9 RAB6-interacting golgin1.6e-5680.12Show/hide
Query:  MTSKNGGEGNGERVLTEGSNDRSEDKM-SKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKREL
        MTS +GG  NGER   EGS+D+ ED+M SKLT+STLQA EEEI+RKKMEV+EKVE QL+RAEEEAKRLAQIWEEL+VM DPM KEVG VRKRIDTVKREL
Subjt:  MTSKNGGEGNGERVLTEGSNDRSEDKM-SKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKREL

Query:  KSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN
        KSLGQICQKKE+EYKE  E+F EKSNEKAQLLA LMELLGQSE+WRM+KLEEL+KNIEST+
Subjt:  KSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN

A0A6J1HV92 RAB6-interacting golgin7.2e-5780.25Show/hide
Query:  MTSKNGGEGNGERVLTEGSNDRSED-KMSK-LTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRE
        MTSK+G EGNGER+++EGS  R ED +M K LT+STLQA EEEIER+KMEVKEKVE QL+RAEEEAKRLAQIWEELEVMGDPMGKEVG VRKRIDT K+E
Subjt:  MTSKNGGEGNGERVLTEGSNDRSED-KMSK-LTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRE

Query:  LKSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN
        LKSLGQICQKKE+EYKEV E+F EK+NEKAQLL TLMELL QSE+WRM KLEELNK+I  TN
Subjt:  LKSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN

SwissProt top hitse value%identityAlignment
A5PKK7 RAB6-interacting golgin6.8e-0428.33Show/hide
Query:  MEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRELKSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMEL
        MEE+ +RKK  + + +  +  R + E  +L +I +EL+ + D +  ++G++R RID    +     +   + E EY   +   + K+  K QL   L  +
Subjt:  MEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRELKSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMEL

Query:  LGQSEKWRMKKLEELNKNIE
        + Q+E  + KKLEEL + ++
Subjt:  LGQSEKWRMKKLEELNKNIE

B1H222 RAB6-interacting golgin4.0e-0428.33Show/hide
Query:  MEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRELKSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMEL
        MEE+ +RKK  + + +  +  R + E  +L +I +EL+ + D +  ++G++R RID    E     +   + E EY   +   + K+  K QL   L  +
Subjt:  MEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRELKSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMEL

Query:  LGQSEKWRMKKLEELNKNIE
        + Q+E  + +KLEEL + ++
Subjt:  LGQSEKWRMKKLEELNKNIE

Q8BRM2 RAB6-interacting golgin8.9e-0428.33Show/hide
Query:  MEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRELKSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMEL
        MEE+ +RKK  + + +  +  + + E  +L +I +EL+ + D +  ++G++R RID    E     +   + E EY   +   + K+  K QL   L  +
Subjt:  MEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRELKSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMEL

Query:  LGQSEKWRMKKLEELNKNIE
        + Q+E  + KKLEEL + ++
Subjt:  LGQSEKWRMKKLEELNKNIE

Arabidopsis top hitse value%identityAlignment
AT2G36410.2 Family of unknown function (DUF662)7.2e-3352.9Show/hide
Query:  NGERVLTEGS------NDRSEDKMSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRELKSLG
        + E VL  GS        R +++M++  +S  +A E+EIE+++MEV+E+++ QL R E+E KRL+ I EELE M DPM KEV VVRK+ID+V +ELK LG
Subjt:  NGERVLTEGS------NDRSEDKMSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRELKSLG

Query:  QICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES
           QKKE EYKE  + F EK+ EK QL+  LMEL+G+SEK RM KLEEL+K+IE+
Subjt:  QICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES

AT3G09980.1 Family of unknown function (DUF662)4.1e-3660.58Show/hide
Query:  RSEDKMSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRELKSLGQICQKKEEEYKEVQEVFK
        + +++MS+  +S  +A EEEIE+KKME++E+V+ QL R EEE KRLA I EELE + DPM KEV +VRK+ID+V +ELK LG   QKKE EYKE  E F 
Subjt:  RSEDKMSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRELKSLGQICQKKEEEYKEVQEVFK

Query:  EKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES
        EK+ EK QL+  LMEL+G+SEK RMKKLEEL+KNI+S
Subjt:  EKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES

AT3G52900.1 Family of unknown function (DUF662)1.4e-3354.37Show/hide
Query:  MTSK-NGGEGNGERVLTEGS---NDRSEDKMSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVK
        M+SK N G      V T G     D  E+++ K+ ++  QA EEEIERKKM VKEKV+ +L  AEE  + L Q  EELE+MGDPM KEVG+VRK+ID   
Subjt:  MTSK-NGGEGNGERVLTEGS---NDRSEDKMSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVK

Query:  RELKSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNI
        R++KSL Q CQKKE+EYK+  E F EK+ EKA L++ LMELL +SE+ R+KKLEE+NK +
Subjt:  RELKSLGQICQKKEEEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNI

AT3G52920.2 Family of unknown function (DUF662)1.2e-3254.74Show/hide
Query:  RSEDKMSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRELKSLGQICQKKEEEYKEVQEVFK
        + +++M++  +S  +A E+EIE++KMEV+E+V+ QL R EEE +RLA I EELE M DPM KEV  VRK+ID+V +ELK LG   QKKE EYKE  + F 
Subjt:  RSEDKMSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRELKSLGQICQKKEEEYKEVQEVFK

Query:  EKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES
        EK+ EK QL+  LMEL+G+SEK R+KKL+EL+++I++
Subjt:  EKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES

AT5G03660.1 Family of unknown function (DUF662)1.2e-3255.8Show/hide
Query:  RSEDKMSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRELKSLGQICQKKEEEYKEVQEVFK
        + +D++S   +S  +A EEEIE+KKME++E+V+ QL R E+E+KRLA I EELE   DPM KEV +VRK+ID++ +ELK LG   QKKE EYK+  E F 
Subjt:  RSEDKMSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRELKSLGQICQKKEEEYKEVQEVFK

Query:  EKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIEST
        EK+ EK +L+  L EL G+SEK+R KKLEEL+KNI+ T
Subjt:  EKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIEST


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAGTAAGAATGGAGGTGAAGGAAATGGCGAGAGAGTCCTAACGGAAGGAAGTAATGATCGGAGCGAAGACAAGATGTCTAAACTGACCATATCTACGTTGCAAGC
TATGGAAGAGGAGATTGAGAGGAAGAAGATGGAAGTAAAAGAGAAGGTAGAATTTCAGTTAACCCGTGCAGAGGAAGAAGCCAAACGCTTGGCACAAATTTGGGAAGAGC
TGGAGGTAATGGGAGATCCAATGGGGAAGGAAGTTGGTGTTGTGCGAAAAAGAATTGACACAGTCAAGAGAGAACTGAAATCTCTGGGACAGATCTGCCAAAAGAAGGAA
GAGGAATATAAGGAAGTCCAGGAAGTATTCAAAGAAAAAAGCAACGAGAAAGCTCAGCTGCTGGCTACACTAATGGAGCTGCTGGGCCAGAGTGAGAAATGGAGGATGAA
AAAGCTCGAGGAGTTGAATAAGAATATAGAATCAACGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGAGTAAGAATGGAGGTGAAGGAAATGGCGAGAGAGTCCTAACGGAAGGAAGTAATGATCGGAGCGAAGACAAGATGTCTAAACTGACCATATCTACGTTGCAAGC
TATGGAAGAGGAGATTGAGAGGAAGAAGATGGAAGTAAAAGAGAAGGTAGAATTTCAGTTAACCCGTGCAGAGGAAGAAGCCAAACGCTTGGCACAAATTTGGGAAGAGC
TGGAGGTAATGGGAGATCCAATGGGGAAGGAAGTTGGTGTTGTGCGAAAAAGAATTGACACAGTCAAGAGAGAACTGAAATCTCTGGGACAGATCTGCCAAAAGAAGGAA
GAGGAATATAAGGAAGTCCAGGAAGTATTCAAAGAAAAAAGCAACGAGAAAGCTCAGCTGCTGGCTACACTAATGGAGCTGCTGGGCCAGAGTGAGAAATGGAGGATGAA
AAAGCTCGAGGAGTTGAATAAGAATATAGAATCAACGAACTGA
Protein sequenceShow/hide protein sequence
MTSKNGGEGNGERVLTEGSNDRSEDKMSKLTISTLQAMEEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGVVRKRIDTVKRELKSLGQICQKKE
EEYKEVQEVFKEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN