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Clc05G23980 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G23980
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCopper transport protein like
Genome locationClcChr05:32047197..32049624
RNA-Seq ExpressionClc05G23980
SyntenyClc05G23980
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR006121 - Heavy metal-associated domain, HMA
IPR036163 - Heavy metal-associated domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648832.1 hypothetical protein Csa_008416 [Cucumis sativus]2.3e-3086.81Show/hide
Query:  TTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAA----AEAEAKPAETVAA
        TTVLKVAMSCQGCVGAVKRVLGKLEGVET+DIDIDAQKVTVKGNV  DVVFQTVSKTGKKTAYWE++A AAPAA    AEAEAKPAE +AA
Subjt:  TTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAA----AEAEAKPAETVAA

XP_004150491.1 copper transport protein ATX1 [Cucumis sativus]5.5e-3287.23Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAA----AEAEAKPAETVAA
        MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVET+DIDIDAQKVTVKGNV  DVVFQTVSKTGKKTAYWE++A AAPAA    AEAEAKPAE +AA
Subjt:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAA----AEAEAKPAETVAA

XP_008446769.1 PREDICTED: copper transport protein ATX1-like [Cucumis melo]1.5e-3288.42Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAA----AEAEAKPAETVAAA
        MSQTTVLKVAMSCQGCVGAVKRVLGKLEGV+TFDIDIDAQKVTVKGNV  DVVFQTVSKTGKKTAYWED+A AAPAA    AEAEAKPAE +AAA
Subjt:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAA----AEAEAKPAETVAAA

XP_022150677.1 copper transport protein ATX1 [Momordica charantia]8.0e-3182.47Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAP------AAPAAAEAEAKPAETVAAA
        MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVE+FD+DIDAQKVTVKG V PDVVFQTVSKTGKKT++WE  AP      A PA AEAEAKPAE VAAA
Subjt:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAP------AAPAAAEAEAKPAETVAAA

XP_038893429.1 copper transport protein ATX1-like [Benincasa hispida]4.2e-3283.17Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAP----------AAPAAAEAEAKPAETVAA
        MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVE FDIDIDAQKVTVKGNV  +VVFQTVSKTGKKTAYWE++AP          AAPA AEAEAKPAETVAA
Subjt:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAP----------AAPAAAEAEAKPAETVAA

Query:  A
        A
Subjt:  A

TrEMBL top hitse value%identityAlignment
A0A0A0KTF7 Copper chaperone2.7e-3287.23Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAA----AEAEAKPAETVAA
        MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVET+DIDIDAQKVTVKGNV  DVVFQTVSKTGKKTAYWE++A AAPAA    AEAEAKPAE +AA
Subjt:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAA----AEAEAKPAETVAA

A0A1S3BFW4 copper transport protein ATX1-like7.1e-3388.42Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAA----AEAEAKPAETVAAA
        MSQTTVLKVAMSCQGCVGAVKRVLGKLEGV+TFDIDIDAQKVTVKGNV  DVVFQTVSKTGKKTAYWED+A AAPAA    AEAEAKPAE +AAA
Subjt:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAA----AEAEAKPAETVAAA

A0A5A7SZ31 Copper transport protein ATX1-like7.1e-3388.42Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAA----AEAEAKPAETVAAA
        MSQTTVLKVAMSCQGCVGAVKRVLGKLEGV+TFDIDIDAQKVTVKGNV  DVVFQTVSKTGKKTAYWED+A AAPAA    AEAEAKPAE +AAA
Subjt:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAA----AEAEAKPAETVAAA

A0A6J1DBD6 copper transport protein ATX13.9e-3182.47Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAP------AAPAAAEAEAKPAETVAAA
        MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVE+FD+DIDAQKVTVKG V PDVVFQTVSKTGKKT++WE  AP      A PA AEAEAKPAE VAAA
Subjt:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAP------AAPAAAEAEAKPAETVAAA

A0A6J1HTV3 copper transport protein ATX1-like isoform X32.5e-3076.85Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAP---------------AAPAA---AEAEA
        MSQTTVLKVAMSCQGCVGAV+RVLGKLEGV+ FDIDIDAQKVTVKGNV  DVVFQTVSKTGKKTAYWED AP               AAPAA   AEAEA
Subjt:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAP---------------AAPAA---AEAEA

Query:  KPAETVAA
        KPAE+VAA
Subjt:  KPAETVAA

SwissProt top hitse value%identityAlignment
B3H6D0 Heavy metal-associated isoprenylated plant protein 453.1e-0947.54Show/hide
Query:  LKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYW
        L V M C+GC   V+R + KL+GV+T +ID+D QKVTV G V  + V + V +TG+   YW
Subjt:  LKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYW

F4JZL7 Heavy metal-associated isoprenylated plant protein 331.8e-0949.23Show/hide
Query:  QTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYW
        QT VLKV + C GC   VK++L K+EGV T  ID +  KVTV GNV P V+ + + K+GK    W
Subjt:  QTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYW

O82089 Copper transport protein CCH1.8e-2573.86Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAAAEAEAKPAETV
        M+QT VLKV MSCQGCVGAV RVLGK+EGVE+FDIDI  QKVTVKGNV P+ VFQTVSKTGKKT+YW   A A P  AEA+ K  ETV
Subjt:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAAAEAEAKPAETV

Q84J88 Heavy metal-associated isoprenylated plant protein 361.1e-0942.19Show/hide
Query:  TTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYW
        T VL+V++ C+GC   +K++L K++GV T +ID+  QKVTV GNV P+++ + + K G+    W
Subjt:  TTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYW

Q94BT9 Copper transport protein ATX16.8e-2573.68Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPA
        MSQT VL+VAM+C+GCVGAVKRVLGK+EGVE+FD+DI  QKVTVKGNV PD V QTV+KTGKKTA+WE     A A
Subjt:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPA

Arabidopsis top hitse value%identityAlignment
AT1G66240.1 homolog of anti-oxidant 14.8e-2673.68Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPA
        MSQT VL+VAM+C+GCVGAVKRVLGK+EGVE+FD+DI  QKVTVKGNV PD V QTV+KTGKKTA+WE     A A
Subjt:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPA

AT1G66240.2 homolog of anti-oxidant 15.5e-2272.73Show/hide
Query:  MSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPA
        M+C+GCVGAVKRVLGK+EGVE+FD+DI  QKVTVKGNV PD V QTV+KTGKKTA+WE     A A
Subjt:  MSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPA

AT3G56240.1 copper chaperone1.3e-2673.86Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAAAEAEAKPAETV
        M+QT VLKV MSCQGCVGAV RVLGK+EGVE+FDIDI  QKVTVKGNV P+ VFQTVSKTGKKT+YW   A A P  AEA+ K  ETV
Subjt:  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAAAEAEAKPAETV

AT5G19090.1 Heavy metal transport/detoxification superfamily protein1.3e-1049.23Show/hide
Query:  QTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYW
        QT VLKV + C GC   VK++L K+EGV T  ID +  KVTV GNV P V+ + + K+GK    W
Subjt:  QTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYW

AT5G27690.1 Heavy metal transport/detoxification superfamily protein7.5e-1142.19Show/hide
Query:  TTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYW
        T VL+V++ C+GC   +K++L K++GV T +ID+  QKVTV GNV P+++ + + K G+    W
Subjt:  TTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCAGACTACTGTCCTCAAGGTTGCCATGTCATGTCAAGGCTGTGTTGGGGCCGTCAAAAGGGTCTTGGGAAAACTGGAAGGAGTCGAGACATTTGACATTGATAT
TGATGCACAAAAGGTGACTGTGAAAGGCAATGTAGCGCCGGATGTAGTTTTCCAAACTGTTTCAAAAACTGGGAAGAAGACTGCCTACTGGGAAGACAACGCCCCGGCAG
CACCTGCAGCGGCTGAAGCAGAAGCTAAACCTGCCGAGACTGTGGCTGCTGCTTAA
mRNA sequenceShow/hide mRNA sequence
TCTTTTTAATTATTATCAATTCGGTTGACCCGACCCATCAACACAGAGTCTATTTAAAGCCTCGTGGAAGCCTACAAAACCCATAGCGCAGAGATCGGCGAGGGCGAATT
TTCCAATAATTTTTCCTCAGCTTCTCTTCCAAATTTCTATAATCTGTAACCATGTCTCAGACTACTGTCCTCAAGGTTGCCATGTCATGTCAAGGCTGTGTTGGGGCCGT
CAAAAGGGTCTTGGGAAAACTGGAAGGAGTCGAGACATTTGACATTGATATTGATGCACAAAAGGTGACTGTGAAAGGCAATGTAGCGCCGGATGTAGTTTTCCAAACTG
TTTCAAAAACTGGGAAGAAGACTGCCTACTGGGAAGACAACGCCCCGGCAGCACCTGCAGCGGCTGAAGCAGAAGCTAAACCTGCCGAGACTGTGGCTGCTGCTTAAAAT
ATCCTCCATTTATTCCATGGAAATTTCAATGCATAAGGTCTTTGCTTCCTGAAGCTAATAATATTGTAACAGTACGCAAACTTGTCTATTTAGTCTGTAATATTTTTATT
TAAGCGTCTCTTCTATGACCTTCTACGTTAAAACTTAACTATAGTCTACGGATATATATCTGTTTTGCCCCATTTCTTTGTTCATTTTGACCTTCTATTTCTGCTTTGTT
AAAATAAGTATCGTTATAATTAAATTTACCGCAACTTGTCAGCTTAAGTTCTTGGGTTAATTGGTGACTCAACGGAAGATGCCTTCAATGGCTCTTCGTTGTTGTTGTTT
GAAATTGTTCGATTCCTTGAAGGACCTTCGTTGGCCGGATCTCATAATTTGAAATTGTTTAGACACAAATCTGATGATGCATTGGGAAGTTGCTTAAATCTGTATTTTGG
TGTTGGAGTTTACTATACATTTCTCCGAACAGAGTAAAATAAATTGATAGAATATTATAGGAATGTTTCGTTATTTTCCACTTCG
Protein sequenceShow/hide protein sequence
MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVAPDVVFQTVSKTGKKTAYWEDNAPAAPAAAEAEAKPAETVAAA