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Clc05G24080 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G24080
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiontransformer-2 protein homolog alpha-like
Genome locationClcChr05:32133646..32136623
RNA-Seq ExpressionClc05G24080
SyntenyClc05G24080
Gene Ontology termsGO:0036297 - interstrand cross-link repair (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008409 - 5'-3' exonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
GO:0070336 - flap-structured DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52709.2 hypothetical protein Csa_008507 [Cucumis sativus]1.5e-2566.98Show/hide
Query:  MGRRR-EIVLILIIVYSSMVASFALRQLFSIDSKHQLIGRRYNNISSTLFDERRRGGRGVIPGYVAGASSRRHGKHKHNLGNRHNNYMEFILIGVSISIT
        MGRRR E+  IL+I+ SSM+ASFA  QLF+IDSK  +  R +NN   + F ERR GGRGVIP YVAGASS RHGKH H+LGNR NNY+EFI+IGVSISI 
Subjt:  MGRRR-EIVLILIIVYSSMVASFALRQLFSIDSKHQLIGRRYNNISSTLFDERRRGGRGVIPGYVAGASSRRHGKHKHNLGNRHNNYMEFILIGVSISIT

Query:  ILCRLI
        +LCR I
Subjt:  ILCRLI
XP_008446753.1 PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo]3.9e-0544.35Show/hide
Query:  MGRRR---EIVLILIIVYSSMVASFALRQLFSIDS-KHQ------LIGRRY---------NNISSTLFDERRRGGRGVIPGYVAGASSRRHGKHKHNLGN
        MGRRR   EI LILI++YSSMV SFA +QLF  DS KHQ        GRRY         N I        R GGRG       G   R  G     + +
Subjt:  MGRRR---EIVLILIIVYSSMVASFALRQLFSIDS-KHQ------LIGRRY---------NNISSTLFDERRRGGRGVIPGYVAGASSRRHGKHKHNLGN

Query:  RHNNYMEFILIGVSISITILCRLI
        R  NYM+FI   VSIS+  LC LI
Subjt:  RHNNYMEFILIGVSISITILCRLI
TrEMBL top hitse value%identityAlignment
A0A0A0KTE6 Uncharacterized protein1.4e-2168.18Show/hide
Query:  MVASFALRQLFSIDSKHQLIGRRYNNISSTLFDERRRGGRGVIPGYVAGASSRRHGKHKHNLGNRHNNYMEFILIGVSISITILCRLI
        M+ASFA  QLF+IDSK  +  R +NN   + F ERR GGRGVIP YVAGASS RHGKH H+LGNR NNY+EFI+IGVSISI +LCR I
Subjt:  MVASFALRQLFSIDSKHQLIGRRYNNISSTLFDERRRGGRGVIPGYVAGASSRRHGKHKHNLGNRHNNYMEFILIGVSISITILCRLI
A0A1S3BFU5 transformer-2 protein homolog alpha-like1.9e-0544.35Show/hide
Query:  MGRRR---EIVLILIIVYSSMVASFALRQLFSIDS-KHQ------LIGRRY---------NNISSTLFDERRRGGRGVIPGYVAGASSRRHGKHKHNLGN
        MGRRR   EI LILI++YSSMV SFA +QLF  DS KHQ        GRRY         N I        R GGRG       G   R  G     + +
Subjt:  MGRRR---EIVLILIIVYSSMVASFALRQLFSIDS-KHQ------LIGRRY---------NNISSTLFDERRRGGRGVIPGYVAGASSRRHGKHKHNLGN

Query:  RHNNYMEFILIGVSISITILCRLI
        R  NYM+FI   VSIS+  LC LI
Subjt:  RHNNYMEFILIGVSISITILCRLI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAAGAAGAGAAATTGTATTGATTTTGATTATTGTTTATTCATCTATGGTGGCTTCCTTTGCTTTGAGACAACTCTTCTCAATAGATTCCAAACACCAATTAAT
TGGTAGAAGATACAATAATATAAGTTCAACATTATTTGATGAACGTCGACGAGGAGGCAGGGGTGTGATCCCAGGATATGTAGCCGGTGCTTCTTCACGCCGTCATGGAA
AGCACAAACACAACCTTGGAAACCGTCATAATAACTACATGGAGTTTATATTGATTGGAGTTTCCATCTCTATTACAATATTGTGTAGACTTATCTAG
mRNA sequenceShow/hide mRNA sequence
TCCTACTTCAATTTTCCCCACCATTTTCTTTTTCTTTATATATAAAAACCCTGCATTAGTTCCACCAACAGACAGTGAAAAAGAAAAGGGGAGAAAAATGGGAAGAAGAA
GAGAAATTGTATTGATTTTGATTATTGTTTATTCATCTATGGTGGCTTCCTTTGCTTTGAGACAACTCTTCTCAATAGATTCCAAACACCAATTAATTGGTAGAAGATAC
AATAATATAAGTTCAACATTATTTGATGAACGTCGACGAGGAGGCAGGGGTGTGATCCCAGGATATGTAGCCGGTGCTTCTTCACGCCGTCATGGAAAGCACAAACACAA
CCTTGGAAACCGTCATAATAACTACATGGAGTTTATATTGATTGGAGTTTCCATCTCTATTACAATATTGTGTAGACTTATCTAGTACTAAACACATTTTAAAACATTGG
TAAAGAGTGAGTAACAAATACTTTAACCTATTTAATCACGAATTACGCTAGACTCATTGTTGATGAAATTTAAATTTTATCATAAGCAATCACTTGTATATTTAAGATTT
CCATATGCTTTTTAGAAGTTGCAATATATAATTGGAGTAGTTACAAATATAGCAATCATGATCAAAATATTTGCAGATATAACACATATATAATTGAAATTGTTGCAAAT
ATAACAATCAGGTTCAAAATATTTGCAGATATAACATAATGC
Protein sequenceShow/hide protein sequence
MGRRREIVLILIIVYSSMVASFALRQLFSIDSKHQLIGRRYNNISSTLFDERRRGGRGVIPGYVAGASSRRHGKHKHNLGNRHNNYMEFILIGVSISITILCRLI