CuGenDBv2

Gene ID	Clc05G24110
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Ribonuclease
Genome location	ClcChr05:32140744..32146774
RNA-Seq Expression	Clc05G24110
Synteny	Clc05G24110
Gene Ontology terms	GO:0016070 - RNA metabolic process (biological process) GO:0044249 - cellular biosynthetic process (biological process) GO:1901576 - organic substance biosynthetic process (biological process) GO:0004518 - nuclease activity (molecular function) GO:0097159 - organic cyclic compound binding (molecular function) GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAB2627157.1 ribonuclease H2 subunit A [Pyrus ussuriensis x Pyrus communis]

3.4e-06

45.26

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Query:  NRFISLSFDVLLAESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGDRQ
        N   SL+F    A+SKTLKEEK EE FENLKA  SIGWAVDV+DPR LS    + SK++L      +   L    L + +  T  +  + VGD +
Subjt:  NRFISLSFDVLLAESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGDRQ

KAF3434473.1 hypothetical protein FNV43_RR25576 [Rhamnella rubrinervis]

3.4e-06

44.58

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Query:  AESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGDRQ
        A+SKTLKEEK EE FENLKA  SIGWAVD++DP+ LS    + +K++L     ++   L  N L + +  T  +  + VGD +
Subjt:  AESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGDRQ

XP_018502702.1 PREDICTED: ribonuclease H2 subunit A [Pyrus x bretschneideri]

3.4e-06

45.26

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Query:  NRFISLSFDVLLAESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGDRQ
        N   SL+F    A+SKTLKEEK EE FENLKA  SIGWAVDV+DPR LS    + SK++L      +   L    L + +  T  +  + VGD +
Subjt:  NRFISLSFDVLLAESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGDRQ

XP_022859637.1 ribonuclease H2 subunit A isoform X1 [Olea europaea var. sylvestris]

4.4e-06

45.78

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Query:  AESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGDRQ
        A+SKTLKEEK EE FENLKA  SIGWAVDV+DPR LS    + +K++L      +   L +  L + +  T  +  + VGD +
Subjt:  AESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGDRQ

XP_028125825.1 ribonuclease H2 subunit A [Camellia sinensis]

2.0e-06

49.38

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Query:  AESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGD
        A+SKTLKEEK EE FENLKA  SIGWAVDV+DPR LS    Q +K++L      +   L    L + +  T  F  + VGD
Subjt:  AESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGD

TrEMBL top hits

e value

%identity

Alignment

A0A0V0HU56 Ribonuclease

2.8e-06

46.91

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Query:  AESKTLKEEKTEEFFENLKAT-SIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGD
        A+SKTLKEEK EE FE LK   SIGWAVDV+DPR LS    + +K++L      +   L + +LEL +  T  +  + VGD
Subjt:  AESKTLKEEKTEEFFENLKAT-SIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGD

A0A161Y7Q1 Ribonuclease

2.8e-06

45.16

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Query:  NRFISLSFDVLLAESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGD
        N   SL F    A+SKTLKEEK EE FENLKA  SIGWAVDV+DPR LS    + +K++L      +   L + +L   +  T  +  + VGD
Subjt:  NRFISLSFDVLLAESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGD

A0A4S4F2C0 Ribonuclease

9.6e-07

49.38

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Query:  AESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGD
        A+SKTLKEEK EE FENLKA  SIGWAVDV+DPR LS    Q +K++L      +   L    L + +  T  F  + VGD
Subjt:  AESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGD

A0A5J5BB18 Ribonuclease

2.8e-06

45.78

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Query:  AESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGDRQ
        A+SKTLKEEK EE FENLKA  SIGWAVDV+DPR LS    + +K++L      +   L +  L + +  T  +  + VGD +
Subjt:  AESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGDRQ

A0A5N5HK20 Ribonuclease

1.6e-06

45.26

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Query:  NRFISLSFDVLLAESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGDRQ
        N   SL+F    A+SKTLKEEK EE FENLKA  SIGWAVDV+DPR LS    + SK++L      +   L    L + +  T  +  + VGD +
Subjt:  NRFISLSFDVLLAESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGDRQ

SwissProt top hits

e value

%identity

Alignment

Q9SEZ6 Ribonuclease H2 subunit A

1.6e-06

41.98

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Query:  AESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGD
        A+SKTLKEEK EE +E+LK   S+GWAVDV+DPR LS      +K +L      +   L +  L++ +  T  +  + VGD
Subjt:  AESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGD

Arabidopsis top hits

e value

%identity

Alignment

AT2G25100.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

1.1e-07

41.98

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Query:  AESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGD
        A+SKTLKEEK EE +E+LK   S+GWAVDV+DPR LS      +K +L      +   L +  L++ +  T  +  + VGD
Subjt:  AESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNLRSTAYFSEENVGD

AT2G25100.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

1.2e-06

70.27

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Query:  AESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLS
        A+SKTLKEEK EE +E+LK   S+GWAVDV+DPR LS
Subjt:  AESKTLKEEKTEEFFENLKA-TSIGWAVDVMDPRGLS

Sequences

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CDS sequence

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ATGGATACTCGGACTGGTGGTTGTTGTTTCTATGTGAAAGTACTTTCGTCTTCTAATTCCTTTCTAATTGTTTCTCATATCACATATCGCTTGAATCGTTTCATTTCCTT
GAGTTTTGATGTTTTGCTTGCAGAATCAAAAACATTGAAAGAAGAGAAGACAGAGGAATTCTTCGAAAATTTGAAGGCTACATCAATTGGATGGGCTGTTGATGTCATGG
ATCCACGGGGGCTCTCACATCCAAAACGGCAAAACTCGAAGATGGATCTTAGGCCGAATCTTGATAAAGCAAAATTTTGTCTTTATCAAAATTCCCTCGAATTGAACCTC
CGTAGCACAGCGTATTTCTCTGAAGAGAATGTAGGTGACCGGCAAATTTTTATACTGTACTCGGTCGCTTTTGTGGGTAACATTTGGATGCAATGTGGAAACATAAAAGA
GATATATCGAATGGGAAAGAGGTCCAACAAGAAAGATGAAGCACACACCTCAATCAGCACATGTAAGTTTGTAACAATATTCTTGTGTCCCTATGGAGACAGCCCTGATA
TCAGAAAACTCTATAGAGATGAGCATGGCGGCCAAAACTGCAGCTGTCAGAAGCCCCATGTTGTTCTCATAGTGATTTCCTGCATTATGTGGTCGACCTTGGCGGTGACG
TGCTTGTGCCGAACCAGCTGCATAAACAGGGATTACGGCTGTACCTCCTCCTGTATGAGGTCTACTGCCACCACCATTTTCTCCACCGCCGCCGGCTGCACTTCCACGAC
CTGCACTTCCATGACCTGCACTTCCACGACGAATCCCATTAGAAACGGTGACTGGACTTGCACTGTATCTTCTGTCAATCTGACTAATAGGAAGAGCTTGACGAATAAGT
TTTTGAGCTATAATCTTCAATCTTTGCTAATTTGTCGTTTATACACACCCACACATATTAGCAGCGATATGGCGATTGGTTGGCAAGAATGGAGGGGGCAATTGCTAGAA
GTAGAGACGACCCAACTGGTGATTTATGGTACACGATTGTGCAATGTGATAATTAATATCTCAATCGTGTTGCTGGAAGCCACTATCTTGGTAAGCGATGATATCACTGC
ACTGAAGTCGATCACGGTAGGCGAGGTCTCTTTTAATCAGCACTAA

mRNA sequence

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Protein sequence

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MDTRTGGCCFYVKVLSSSNSFLIVSHITYRLNRFISLSFDVLLAESKTLKEEKTEEFFENLKATSIGWAVDVMDPRGLSHPKRQNSKMDLRPNLDKAKFCLYQNSLELNL
RSTAYFSEENVGDRQIFILYSVAFVGNIWMQCGNIKEIYRMGKRSNKKDEAHTSISTCKFVTIFLCPYGDSPDIRKLYRDEHGGQNCSCQKPHVVLIVISCIMWSTLAVT
CLCRTSCINRDYGCTSSCMRSTATTIFSTAAGCTSTTCTSMTCTSTTNPIRNGDWTCTVSSVNLTNRKSLTNKFLSYNLQSLLICRLYTPTHISSDMAIGWQEWRGQLLE
VETTQLVIYGTRLCNVIINISIVLLEATILVSDDITALKSITVGEVSFNQH

Clc05G24110 (gene) of Watermelon (cordophanus) v2 genome