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Clc05G24480 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G24480
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein PIN-LIKES 2-like
Genome locationClcChr05:32446235..32446690
RNA-Seq ExpressionClc05G24480
SyntenyClc05G24480
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0080162 - intracellular auxin transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004776 - Membrane transport protein
IPR039305 - Protein PIN-LIKES 2/6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573917.1 Protein PIN-LIKES 2, partial [Cucurbita argyrosperma subsp. sororia]2.0e-5078.72Show/hide
Query:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG
        +FRLLYET I+ SEE+LL AIVPLMKLLC AV GLILAH   K+IPK T  LL KLVFALFLPCLIFTELGQSITLES  QWWFIP NVLLSTAIGCALG
Subjt:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG

Query:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA
        YLVVA CHPPP        MTAFG TGNL+LAVVGSVCHTA
Subjt:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA

KAG7012981.1 Protein PIN-LIKES 2, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-5078.72Show/hide
Query:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG
        +FRLLYET I+ SEE+LL AIVPLMKLLC AV GLILAH   K+IPK T  LL KLVFALFLPCLIFTELGQSITLES  QWWFIP NVLLSTAIGCALG
Subjt:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG

Query:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA
        YLVVA CHPPP        MTAFG TGNL+LAVVGSVCHTA
Subjt:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA

XP_022945295.1 protein PIN-LIKES 2-like isoform X2 [Cucurbita moschata]2.0e-5078.72Show/hide
Query:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG
        +FRLLYET I+ SEE+LL AIVPLMKLLC AV GLILAH   K+IPK T  LL KLVFALFLPCLIFTELGQSITLES  QWWFIP NVLLSTAIGCALG
Subjt:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG

Query:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA
        YLVVA CHPPP        MTAFG TGNL+LAVVGSVCHTA
Subjt:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA

XP_022968440.1 protein PIN-LIKES 2-like isoform X1 [Cucurbita maxima]2.0e-5078.72Show/hide
Query:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG
        +FRLLYET I+ SEE+LL AIVPLMKLLC AV GLILAH   K+IPK T  LL KLVFALFLPCLIFTELGQSITLES  QWWFIP NVLLSTAIGCALG
Subjt:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG

Query:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA
        YLVVA CHPPP        MTAFG TGNL+LAVVGSVCHTA
Subjt:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA

XP_022968442.1 protein PIN-LIKES 2-like isoform X2 [Cucurbita maxima]2.0e-5078.72Show/hide
Query:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG
        +FRLLYET I+ SEE+LL AIVPLMKLLC AV GLILAH   K+IPK T  LL KLVFALFLPCLIFTELGQSITLES  QWWFIP NVLLSTAIGCALG
Subjt:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG

Query:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA
        YLVVA CHPPP        MTAFG TGNL+LAVVGSVCHTA
Subjt:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA

TrEMBL top hitse value%identityAlignment
A0A6J1G0E7 protein PIN-LIKES 2-like isoform X19.5e-5178.72Show/hide
Query:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG
        +FRLLYET I+ SEE+LL AIVPLMKLLC AV GLILAH   K+IPK T  LL KLVFALFLPCLIFTELGQSITLES  QWWFIP NVLLSTAIGCALG
Subjt:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG

Query:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA
        YLVVA CHPPP        MTAFG TGNL+LAVVGSVCHTA
Subjt:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA

A0A6J1G0J2 protein PIN-LIKES 2-like isoform X29.5e-5178.72Show/hide
Query:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG
        +FRLLYET I+ SEE+LL AIVPLMKLLC AV GLILAH   K+IPK T  LL KLVFALFLPCLIFTELGQSITLES  QWWFIP NVLLSTAIGCALG
Subjt:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG

Query:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA
        YLVVA CHPPP        MTAFG TGNL+LAVVGSVCHTA
Subjt:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA

A0A6J1HTI4 protein PIN-LIKES 2-like isoform X29.5e-5178.72Show/hide
Query:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG
        +FRLLYET I+ SEE+LL AIVPLMKLLC AV GLILAH   K+IPK T  LL KLVFALFLPCLIFTELGQSITLES  QWWFIP NVLLSTAIGCALG
Subjt:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG

Query:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA
        YLVVA CHPPP        MTAFG TGNL+LAVVGSVCHTA
Subjt:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA

A0A6J1HUV6 protein PIN-LIKES 2-like isoform X19.5e-5178.72Show/hide
Query:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG
        +FRLLYET I+ SEE+LL AIVPLMKLLC AV GLILAH   K+IPK T  LL KLVFALFLPCLIFTELGQSITLES  QWWFIP NVLLSTAIGCALG
Subjt:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG

Query:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA
        YLVVA CHPPP        MTAFG TGNL+LAVVGSVCHTA
Subjt:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA

A0A6J1HY11 protein PIN-LIKES 2-like isoform X39.5e-5178.72Show/hide
Query:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG
        +FRLLYET I+ SEE+LL AIVPLMKLLC AV GLILAH   K+IPK T  LL KLVFALFLPCLIFTELGQSITLES  QWWFIP NVLLSTAIGCALG
Subjt:  FFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALG

Query:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA
        YLVVA CHPPP        MTAFG TGNL+LAVVGSVCHTA
Subjt:  YLVVAKCHPPP---HTIPQMTAFGYTGNLSLAVVGSVCHTA

SwissProt top hitse value%identityAlignment
F4HWB6 Protein PIN-LIKES 11.1e-1133.05Show/hide
Query:  VPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCHPPPH---TIPQMT
        +P+ K+L     G  LA     ++     + L+ +VF +F P L+ + L ++IT ES ++ WF+P NVLL+  IG  LG++V+    PP H    I    
Subjt:  VPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCHPPPH---TIPQMT

Query:  AFGYTGNLSLAVVGSVCH
        A G  GN+ L ++ ++C+
Subjt:  AFGYTGNLSLAVVGSVCH

Q9C999 Protein PIN-LIKES 21.6e-3962.41Show/hide
Query:  DIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCH
        ++ S   ++L  +VPL+KL+C  V GL+LAH   +L+P+AT RLLSKLVFALFLPCLIFTELG+SITL++ +QWWFIP NVLLS  +G  +GYLVV  C 
Subjt:  DIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCH

Query:  PPPH----TIPQMTAFGYTGNLSLAVVGSVCHT
        PPP     TI  MTAFG TGNL LA+V SVCHT
Subjt:  PPPH----TIPQMTAFGYTGNLSLAVVGSVCHT

Q9FKY4 Protein PIN-LIKES 71.3e-1537.9Show/hide
Query:  ENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCHPPPH--
        E L +A +P++++L  +V G  LA     L+   T R ++KLVF +F PC++F  L +++TL+  I WWF+P NV ++  +G  LG+LVV   +P P   
Subjt:  ENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCHPPPH--

Query:  -TIPQMTAFGYTGNLSLAVVGSVC
          I    A G  GNL L +V ++C
Subjt:  -TIPQMTAFGYTGNLSLAVVGSVC

Q9LZN2 Protein PIN-LIKES 69.3e-1939.67Show/hide
Query:  IAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCHPP----PHTI
        IA++P+ K+      GL++A     ++P +  +LL+ LVF+L LPCLIF++LGQ++TL+  +QWWFIP NV+L T  G  +G++V +   PP      TI
Subjt:  IAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCHPP----PHTI

Query:  PQMTAFGYTGNLSLAVVGSVC
         Q+   G  GN+ L ++ ++C
Subjt:  PQMTAFGYTGNLSLAVVGSVC

Q9SHL8 Protein PIN-LIKES 52.1e-1537.7Show/hide
Query:  LLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCHPPPH---T
        L +A +P++++L  ++ G  +A    KL P      ++K+VF LF P L+F  L Q++TLE  I WWF+P N+ L+  IG  LG+LVV    PPP+    
Subjt:  LLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCHPPPH---T

Query:  IPQMTAFGYTGNLSLAVVGSVC
        I    + G  GNL + +V ++C
Subjt:  IPQMTAFGYTGNLSLAVVGSVC

Arabidopsis top hitse value%identityAlignment
AT1G71090.1 Auxin efflux carrier family protein1.2e-4062.41Show/hide
Query:  DIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCH
        ++ S   ++L  +VPL+KL+C  V GL+LAH   +L+P+AT RLLSKLVFALFLPCLIFTELG+SITL++ +QWWFIP NVLLS  +G  +GYLVV  C 
Subjt:  DIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCH

Query:  PPPH----TIPQMTAFGYTGNLSLAVVGSVCHT
        PPP     TI  MTAFG TGNL LA+V SVCHT
Subjt:  PPPH----TIPQMTAFGYTGNLSLAVVGSVCHT

AT2G17500.1 Auxin efflux carrier family protein1.5e-1637.7Show/hide
Query:  LLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCHPPPH---T
        L +A +P++++L  ++ G  +A    KL P      ++K+VF LF P L+F  L Q++TLE  I WWF+P N+ L+  IG  LG+LVV    PPP+    
Subjt:  LLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCHPPPH---T

Query:  IPQMTAFGYTGNLSLAVVGSVC
        I    + G  GNL + +V ++C
Subjt:  IPQMTAFGYTGNLSLAVVGSVC

AT2G17500.3 Auxin efflux carrier family protein1.5e-1637.7Show/hide
Query:  LLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCHPPPH---T
        L +A +P++++L  ++ G  +A    KL P      ++K+VF LF P L+F  L Q++TLE  I WWF+P N+ L+  IG  LG+LVV    PPP+    
Subjt:  LLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCHPPPH---T

Query:  IPQMTAFGYTGNLSLAVVGSVC
        I    + G  GNL + +V ++C
Subjt:  IPQMTAFGYTGNLSLAVVGSVC

AT5G01990.1 Auxin efflux carrier family protein6.6e-2039.67Show/hide
Query:  IAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCHPP----PHTI
        IA++P+ K+      GL++A     ++P +  +LL+ LVF+L LPCLIF++LGQ++TL+  +QWWFIP NV+L T  G  +G++V +   PP      TI
Subjt:  IAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCHPP----PHTI

Query:  PQMTAFGYTGNLSLAVVGSVC
         Q+   G  GN+ L ++ ++C
Subjt:  PQMTAFGYTGNLSLAVVGSVC

AT5G65980.1 Auxin efflux carrier family protein8.9e-1737.9Show/hide
Query:  ENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCHPPPH--
        E L +A +P++++L  +V G  LA     L+   T R ++KLVF +F PC++F  L +++TL+  I WWF+P NV ++  +G  LG+LVV   +P P   
Subjt:  ENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAKCHPPPH--

Query:  -TIPQMTAFGYTGNLSLAVVGSVC
          I    A G  GNL L +V ++C
Subjt:  -TIPQMTAFGYTGNLSLAVVGSVC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGAAGAATTCTTCAGATTGCTTTATGAAACAGACATAAAATCTAGTGAAGAAAACCTACTTATTGCAATTGTGCCTTTAATGAAGCTTCTCTGCCATGCAGTATT
TGGACTAATTCTTGCCCACTCAAACAGAAAACTCATCCCAAAAGCAACATGTAGGTTACTTTCCAAACTTGTTTTTGCCTTGTTCTTGCCCTGCTTGATTTTTACTGAAC
TGGGCCAAAGTATCACGCTTGAGAGTTTCATTCAGTGGTGGTTTATTCCAGCAAATGTGCTACTCAGCACAGCCATTGGTTGTGCCCTTGGGTATTTGGTTGTTGCTAAA
TGTCATCCACCCCCTCATACCATACCTCAAATGACAGCATTTGGTTATACTGGAAATCTCTCTCTTGCAGTTGTGGGATCAGTTTGTCACACTGCAATGACCCTTTTGAT
CCTTCTCATACCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCGAAGAATTCTTCAGATTGCTTTATGAAACAGACATAAAATCTAGTGAAGAAAACCTACTTATTGCAATTGTGCCTTTAATGAAGCTTCTCTGCCATGCAGTATT
TGGACTAATTCTTGCCCACTCAAACAGAAAACTCATCCCAAAAGCAACATGTAGGTTACTTTCCAAACTTGTTTTTGCCTTGTTCTTGCCCTGCTTGATTTTTACTGAAC
TGGGCCAAAGTATCACGCTTGAGAGTTTCATTCAGTGGTGGTTTATTCCAGCAAATGTGCTACTCAGCACAGCCATTGGTTGTGCCCTTGGGTATTTGGTTGTTGCTAAA
TGTCATCCACCCCCTCATACCATACCTCAAATGACAGCATTTGGTTATACTGGAAATCTCTCTCTTGCAGTTGTGGGATCAGTTTGTCACACTGCAATGACCCTTTTGAT
CCTTCTCATACCATAA
Protein sequenceShow/hide protein sequence
MSEEFFRLLYETDIKSSEENLLIAIVPLMKLLCHAVFGLILAHSNRKLIPKATCRLLSKLVFALFLPCLIFTELGQSITLESFIQWWFIPANVLLSTAIGCALGYLVVAK
CHPPPHTIPQMTAFGYTGNLSLAVVGSVCHTAMTLLILLIP