; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G24940 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G24940
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionVQ motif-containing protein 8
Genome locationClcChr05:32771240..32771977
RNA-Seq ExpressionClc05G24940
SyntenyClc05G24940
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0007276 - gamete generation (biological process)
GO:0051302 - regulation of cell division (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0070545 - PeBoW complex (cellular component)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25
IPR039833 - VQ motif-containing protein 8, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013019.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-2551.97Show/hide
Query:  MSPPKSCEINGPRPSPLLIHKDSRLIRK----PQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSSSEEEEN
        MSPPK   I+GPRP PLL+HK SR IRK    PQLR+PVIIYTHSPKIIHT PKDFMALVQRLTG +PP     P          + N++ SS   EE++
Subjt:  MSPPKSCEINGPRPSPLLIHKDSRLIRK----PQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSSSEEEEN

Query:  ECGDQKQSLVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF
         C                        P F+  +L+NSLSPSFMEFLK LPEF
Subjt:  ECGDQKQSLVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF

KGN52621.2 hypothetical protein Csa_008052 [Cucumis sativus]3.2e-2977.45Show/hide
Query:  MSPPKSCEINGPRPSPLLIHKDSRLIRKP-QLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSL-SLPDRNFNDNESSS---SEEEE
        MSPPKS EINGPRPSPLLIH  SRLIRKP QLRQP+IIYTHSPKIIHTHPKDFMALVQRLTG  PPPP  LPLP +  SL +RN NDN+SSS   +EE+ 
Subjt:  MSPPKSCEINGPRPSPLLIHKDSRLIRKP-QLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSL-SLPDRNFNDNESSS---SEEEE

Query:  NE
        NE
Subjt:  NE

XP_008466850.1 PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo]2.7e-4468.87Show/hide
Query:  MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSS---SEEEENE
        MSPPKS +ING RPSPLLIH DSRL+RKPQLRQP+IIYTHSPKIIHTHPKDFMALVQRLTGF PPPP           P+RN NDN+S+S   SEE+ NE
Subjt:  MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSS---SEEEENE

Query:  CGDQKQSLVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF
                  +Q+N S+L+YSSD+T PFSSPA L+SLSPSFM+FLKALPEF
Subjt:  CGDQKQSLVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF

XP_022150646.1 VQ motif-containing protein 8, chloroplastic [Momordica charantia]6.4e-3862.35Show/hide
Query:  MSPPKSCEINGPRPSPLLIHKDSRLIRK--PQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFN---DNESSSSEEEE
        MSP KSC+INGPRPSPLLIHK SRLIRK  PQLRQP+IIYTHSPKIIHT PKDFMALVQRLTGFTPPPPP           DRN N   DN+SSS   EE
Subjt:  MSPPKSCEINGPRPSPLLIHKDSRLIRK--PQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFN---DNESSSSEEEE

Query:  NECGDQ-------KQSLVQRQTN----------PSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF
          CGD        K+   Q Q++          P+ LRY+ D T  F+SP L NSLSPSFMEFLK LPEF
Subjt:  NECGDQ-------KQSLVQRQTN----------PSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF

XP_038893302.1 VQ motif-containing protein 8, chloroplastic [Benincasa hispida]7.8e-6082.69Show/hide
Query:  MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSS---SEEEENE
        MSPPKSCEINGPRPSPLLIHKDSR IRKPQLRQPVIIYTHSPKIIHT PKDFMALVQRLTGF PPPPP     LSLS  +RNFNDN+SSS   +EEE NE
Subjt:  MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSS---SEEEENE

Query:  CGDQKQS-----LVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF
        CGDQKQS     LVQRQ+N SLLRYSSD+T PFSSPAL+NSLSPSFMEFLKALPEF
Subjt:  CGDQKQS-----LVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF

TrEMBL top hitse value%identityAlignment
A0A0A0KT78 VQ domain-containing protein2.1e-4270.39Show/hide
Query:  MSPPKSCEINGPRPSPLLIHKDSRLIRKP-QLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSL-SLPDRNFNDNESSSSEEEENEC
        MSPPKS EINGPRPSPLLIH  SRLIRKP QLRQP+IIYTHSPKIIHTHPKDFMALVQRLTG  PPPP  LPLP +  SL +RN NDN+SSS    E   
Subjt:  MSPPKSCEINGPRPSPLLIHKDSRLIRKP-QLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSL-SLPDRNFNDNESSSSEEEENEC

Query:  GDQKQSLVQRQTNPSLLRYSS-DLTPPFSSPALL-NSLSPSFMEFLKALPEF
            + + ++Q+N S+L+YSS D+T PFSSPA L +SLSPSFM+FLKALPEF
Subjt:  GDQKQSLVQRQTNPSLLRYSS-DLTPPFSSPALL-NSLSPSFMEFLKALPEF

A0A1S3CS67 VQ motif-containing protein 8, chloroplastic-like1.3e-4468.87Show/hide
Query:  MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSS---SEEEENE
        MSPPKS +ING RPSPLLIH DSRL+RKPQLRQP+IIYTHSPKIIHTHPKDFMALVQRLTGF PPPP           P+RN NDN+S+S   SEE+ NE
Subjt:  MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSS---SEEEENE

Query:  CGDQKQSLVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF
                  +Q+N S+L+YSSD+T PFSSPA L+SLSPSFM+FLKALPEF
Subjt:  CGDQKQSLVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF

A0A5D3CFH5 VQ motif-containing protein 81.3e-4468.87Show/hide
Query:  MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSS---SEEEENE
        MSPPKS +ING RPSPLLIH DSRL+RKPQLRQP+IIYTHSPKIIHTHPKDFMALVQRLTGF PPPP           P+RN NDN+S+S   SEE+ NE
Subjt:  MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSS---SEEEENE

Query:  CGDQKQSLVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF
                  +Q+N S+L+YSSD+T PFSSPA L+SLSPSFM+FLKALPEF
Subjt:  CGDQKQSLVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF

A0A6J1DC48 VQ motif-containing protein 8, chloroplastic3.1e-3862.35Show/hide
Query:  MSPPKSCEINGPRPSPLLIHKDSRLIRK--PQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFN---DNESSSSEEEE
        MSP KSC+INGPRPSPLLIHK SRLIRK  PQLRQP+IIYTHSPKIIHT PKDFMALVQRLTGFTPPPPP           DRN N   DN+SSS   EE
Subjt:  MSPPKSCEINGPRPSPLLIHKDSRLIRK--PQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFN---DNESSSSEEEE

Query:  NECGDQ-------KQSLVQRQTN----------PSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF
          CGD        K+   Q Q++          P+ LRY+ D T  F+SP L NSLSPSFMEFLK LPEF
Subjt:  NECGDQ-------KQSLVQRQTN----------PSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF

A0A6P6V8N0 VQ motif-containing protein 8, chloroplastic-like3.0e-1739.27Show/hide
Query:  INGPRPSPLLIHKDSRLIRKP---------------------QLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNF----
        INGPRPSPL I+KDS +I+KP                     Q RQPVIIYTHSPKIIHT PKDFMALVQ+LTGF+        +       D+      
Subjt:  INGPRPSPLLIHKDSRLIRKP---------------------QLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNF----

Query:  NDNESSSSEEEENECGDQKQSLVQRQT------NPSLLRYSSDL---TP-----------------PFSSPALLNSLSPSFMEFLKALPEF
         DN+SSS   ++   GD    +++  +      N  L  Y +D+   TP                  F+SP +++SLSPSF+EF+K LPE+
Subjt:  NDNESSSSEEEENECGDQKQSLVQRQT------NPSLLRYSSDL---TP-----------------PFSSPALLNSLSPSFMEFLKALPEF

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B1.0e-0639Show/hide
Query:  PKSCEINGPRPSPLLIHKDS-RLIRKPQLRQ-----------------------PVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLP
        P+S    GP+P+PL +  DS ++I+KP L                         PV IYT +P+IIHTHP +FM LVQRLTG T     S     S S P
Subjt:  PKSCEINGPRPSPLLIHKDS-RLIRKPQLRQ-----------------------PVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLP

Q8LGD5 Protein MKS12.9e-0942.67Show/hide
Query:  KSCEINGPRPSPLLIHKDSRLIRKPQL----------------RQPVIIYTHSPKIIHTHPKDFMALVQRLTGFT
        +  +I GPRPSPL +HKDS  I+KP                  R+PV+IY  SPK++H    +FM +VQRLTG +
Subjt:  KSCEINGPRPSPLLIHKDSRLIRKPQL----------------RQPVIIYTHSPKIIHTHPKDFMALVQRLTGFT

Q9CA36 VQ motif-containing protein 8, chloroplastic5.9e-1035.62Show/hide
Query:  MSPPKSCEINGPRPSPLLIHKDSRLIRK---------PQLR-QPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSS
        M P +  EING RPS L +  +S  I+K         P  R  PVIIY HSPK+IHT  +DFMALVQRLTG                +  RN +++ SS 
Subjt:  MSPPKSCEINGPRPSPLLIHKDSRLIRK---------PQLR-QPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSS

Query:  SEEEENECGDQ-----KQSLVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKAL
          EE N   D       Q   QRQ    +  ++      F SP  L  +SP+  +  + L
Subjt:  SEEEENECGDQ-----KQSLVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKAL

Q9LS54 VQ motif-containing protein 202.4e-1156.45Show/hide
Query:  PRPSPLLIHKDSRLIRKP----------QLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFT
        P P  L ++KDS +I+KP          + R PVIIYTH+P+IIHT+PKDFMALVQ+LTG T
Subjt:  PRPSPLLIHKDSRLIRKP----------QLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFT

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding7.4e-0839Show/hide
Query:  PKSCEINGPRPSPLLIHKDS-RLIRKPQLRQ-----------------------PVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLP
        P+S    GP+P+PL +  DS ++I+KP L                         PV IYT +P+IIHTHP +FM LVQRLTG T     S     S S P
Subjt:  PKSCEINGPRPSPLLIHKDS-RLIRKPQLRQ-----------------------PVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLP

AT1G21326.1 VQ motif-containing protein4.6e-1043Show/hide
Query:  PKSCEINGPRPSPLLIHKDS-RLIRKPQLRQ-----------------------PVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLP
        P+S  I GPRP PL +  DS ++I+KP L                         PVIIYT SP+IIHTHP +FM LVQRLTG T     S     S S P
Subjt:  PKSCEINGPRPSPLLIHKDS-RLIRKPQLRQ-----------------------PVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLP

AT1G68450.1 VQ motif-containing protein4.2e-1135.62Show/hide
Query:  MSPPKSCEINGPRPSPLLIHKDSRLIRK---------PQLR-QPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSS
        M P +  EING RPS L +  +S  I+K         P  R  PVIIY HSPK+IHT  +DFMALVQRLTG                +  RN +++ SS 
Subjt:  MSPPKSCEINGPRPSPLLIHKDSRLIRK---------PQLR-QPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSS

Query:  SEEEENECGDQ-----KQSLVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKAL
          EE N   D       Q   QRQ    +  ++      F SP  L  +SP+  +  + L
Subjt:  SEEEENECGDQ-----KQSLVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKAL

AT3G18360.1 VQ motif-containing protein1.7e-1256.45Show/hide
Query:  PRPSPLLIHKDSRLIRKP----------QLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFT
        P P  L ++KDS +I+KP          + R PVIIYTH+P+IIHT+PKDFMALVQ+LTG T
Subjt:  PRPSPLLIHKDSRLIRKP----------QLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFT

AT3G18690.1 MAP kinase substrate 12.1e-1042.67Show/hide
Query:  KSCEINGPRPSPLLIHKDSRLIRKPQL----------------RQPVIIYTHSPKIIHTHPKDFMALVQRLTGFT
        +  +I GPRPSPL +HKDS  I+KP                  R+PV+IY  SPK++H    +FM +VQRLTG +
Subjt:  KSCEINGPRPSPLLIHKDSRLIRKPQL----------------RQPVIIYTHSPKIIHTHPKDFMALVQRLTGFT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCCACCTAAATCCTGCGAAATCAATGGCCCTCGCCCTTCTCCTCTCCTAATCCACAAAGATTCTCGTTTGATTCGTAAGCCCCAGCTCCGACAGCCCGTCATCAT
TTACACCCATTCCCCCAAAATCATCCACACCCACCCAAAAGACTTCATGGCCTTGGTTCAACGCCTCACCGGCTTCACCCCACCGCCGCCGCCCTCCTTACCCTTACCCT
TGTCCTTGTCGTTGCCGGACAGAAATTTTAACGACAATGAATCTTCGTCGTCGGAGGAGGAGGAGAATGAATGTGGGGATCAGAAACAGAGTTTAGTGCAGAGGCAGACT
AATCCTTCTCTTCTCAGATATTCTTCCGATCTTACCCCGCCGTTTTCTTCCCCTGCTTTGCTTAATTCCCTGTCCCCTTCTTTCATGGAGTTTCTTAAAGCCCTTCCTGA
ATTTTAA
mRNA sequenceShow/hide mRNA sequence
AACAAATTAACTACTTTTTTCCCTCTTTTAATTGAATCAACTTCACTTCTAATTAAAATTACCAATCTCGAAATTGCTCTGTAATTGGTAATTAACTCCTCCACCATGAG
CCCACCTAAATCCTGCGAAATCAATGGCCCTCGCCCTTCTCCTCTCCTAATCCACAAAGATTCTCGTTTGATTCGTAAGCCCCAGCTCCGACAGCCCGTCATCATTTACA
CCCATTCCCCCAAAATCATCCACACCCACCCAAAAGACTTCATGGCCTTGGTTCAACGCCTCACCGGCTTCACCCCACCGCCGCCGCCCTCCTTACCCTTACCCTTGTCC
TTGTCGTTGCCGGACAGAAATTTTAACGACAATGAATCTTCGTCGTCGGAGGAGGAGGAGAATGAATGTGGGGATCAGAAACAGAGTTTAGTGCAGAGGCAGACTAATCC
TTCTCTTCTCAGATATTCTTCCGATCTTACCCCGCCGTTTTCTTCCCCTGCTTTGCTTAATTCCCTGTCCCCTTCTTTCATGGAGTTTCTTAAAGCCCTTCCTGAATTTT
AAAATCATCTTCATCATTATTCATCCCACCTCTTTCTTTTTCTGTATAATTTGTGAATTATTACTTACATAAGAATTCAATTCATTCTTTATCTCTTTTATATAATTTAA
ATGTTTGTGATTGAAGATTCCAGAATTGTGATATGGGATGAGTCGTTTTTCCTTGGTTGTTCCTCTACATATTTTGCG
Protein sequenceShow/hide protein sequence
MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSSSEEEENECGDQKQSLVQRQT
NPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF