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Clc05G25490 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G25490
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNudix hydrolase
Genome locationClcChr05:33234254..33235090
RNA-Seq ExpressionClc05G25490
SyntenyClc05G25490
Gene Ontology termsGO:0006203 - dGTP catabolic process (biological process)
GO:0005829 - cytosol (cellular component)
GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity (molecular function)
InterPro domainsIPR000086 - NUDIX hydrolase domain
IPR015797 - NUDIX hydrolase-like domain superfamily
IPR020084 - NUDIX hydrolase, conserved site
IPR020476 - NUDIX hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034516.1 nudix hydrolase 1-like [Cucumis melo var. makuwa]6.5e-7386.5Show/hide
Query:  MVSAAEQSNGSKL------DHTAA-PSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMN
        MVSAAEQ N   L      DH AA PSPQVAVAICLLR K ILMGRRLVSIGNSKYSLPSGHLEFGE FEECA REIKEETGLDI KIEFL VTNNLFM+
Subjt:  MVSAAEQSNGSKL------DHTAA-PSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMN

Query:  QPCPAHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFPQ
        QP PAHYVVVF+RAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLF PIKKMVMDGFNPFPQ
Subjt:  QPCPAHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFPQ

XP_004135122.1 geranyl diphosphate phosphohydrolase [Cucumis sativus]1.8e-7081.6Show/hide
Query:  MVSAAEQSNGSKL--------DHTAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFM
        MVSAA+Q+N  KL         H A+PSPQVAVAICLL+ K ILMGRRLVSIGNSKYSLPSGHLEFGE FEECA REIKEETGLDI KIEFL VTNNLFM
Subjt:  MVSAAEQSNGSKL--------DHTAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFM

Query:  NQPCPAHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFP
        +QP PAHYVVVF+RAVLTDPTQTP+NLEPEKCDGWDWYEWD LP PLF PIKKMV DGFNPFP
Subjt:  NQPCPAHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFP

XP_008446534.1 PREDICTED: nudix hydrolase 1-like [Cucumis melo]6.5e-7386.5Show/hide
Query:  MVSAAEQSNGSKL------DHTAA-PSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMN
        MVSAAEQ N   L      DH AA PSPQVAVAICLLR K ILMGRRLVSIGNSKYSLPSGHLEFGE FEECA REIKEETGLDI KIEFL VTNNLFM+
Subjt:  MVSAAEQSNGSKL------DHTAA-PSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMN

Query:  QPCPAHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFPQ
        QP PAHYVVVF+RAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLF PIKKMVMDGFNPFPQ
Subjt:  QPCPAHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFPQ

XP_023541815.1 geranyl diphosphate phosphohydrolase-like [Cucurbita pepo subsp. pepo]5.3e-6779.11Show/hide
Query:  MVSAAEQSNGSK---LDHTAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCP
        MVS  +Q NG+K   L     PSPQVAVAICLLRGK +LMGRRLVSIGNSKYSLPSGHLEFGE FEECAARE+KEETGLDI K+EFL VTNNLF++QP P
Subjt:  MVSAAEQSNGSK---LDHTAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCP

Query:  AHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFP
        AHYVVVF+RAVL DP QTPLNLEP+KC GWDWYEWD+LP+PLF PIK MVM+GFNPFP
Subjt:  AHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFP

XP_038892917.1 geranyl diphosphate phosphohydrolase [Benincasa hispida]5.9e-7485.8Show/hide
Query:  MVSAAEQSNGSKL------DHTAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQ
        MVSAAEQ+NGSKL         AAP+PQVAVAICLLRGK ILMGRRLVSIGNSKYSLPSGHLEFGE FEECAARE+KEETGLDI KIEFL VTNNLF++Q
Subjt:  MVSAAEQSNGSKL------DHTAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQ

Query:  PCPAHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFPQ
        P  AHYVVVF+RAVL DPTQTPLNLEPEKCDGWDWYEWDNLPQPLF PIKKMVMDGFNPFPQ
Subjt:  PCPAHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFPQ

TrEMBL top hitse value%identityAlignment
A0A0A0KR28 Nudix hydrolase domain-containing protein8.6e-7181.6Show/hide
Query:  MVSAAEQSNGSKL--------DHTAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFM
        MVSAA+Q+N  KL         H A+PSPQVAVAICLL+ K ILMGRRLVSIGNSKYSLPSGHLEFGE FEECA REIKEETGLDI KIEFL VTNNLFM
Subjt:  MVSAAEQSNGSKL--------DHTAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFM

Query:  NQPCPAHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFP
        +QP PAHYVVVF+RAVLTDPTQTP+NLEPEKCDGWDWYEWD LP PLF PIKKMV DGFNPFP
Subjt:  NQPCPAHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFP

A0A1S3BFY2 nudix hydrolase 1-like3.1e-7386.5Show/hide
Query:  MVSAAEQSNGSKL------DHTAA-PSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMN
        MVSAAEQ N   L      DH AA PSPQVAVAICLLR K ILMGRRLVSIGNSKYSLPSGHLEFGE FEECA REIKEETGLDI KIEFL VTNNLFM+
Subjt:  MVSAAEQSNGSKL------DHTAA-PSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMN

Query:  QPCPAHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFPQ
        QP PAHYVVVF+RAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLF PIKKMVMDGFNPFPQ
Subjt:  QPCPAHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFPQ

A0A5D3CCL5 Nudix hydrolase 1-like3.1e-7386.5Show/hide
Query:  MVSAAEQSNGSKL------DHTAA-PSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMN
        MVSAAEQ N   L      DH AA PSPQVAVAICLLR K ILMGRRLVSIGNSKYSLPSGHLEFGE FEECA REIKEETGLDI KIEFL VTNNLFM+
Subjt:  MVSAAEQSNGSKL------DHTAA-PSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMN

Query:  QPCPAHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFPQ
        QP PAHYVVVF+RAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLF PIKKMVMDGFNPFPQ
Subjt:  QPCPAHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFPQ

A0A6J1G1K2 geranyl diphosphate phosphohydrolase-like8.3e-6678.98Show/hide
Query:  MVSAAEQSNGSK---LDHTAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCP
        M S  +Q NG+K   L     PSPQVAVAICLLR K +LMGRRLVSIGNSKYSLPSGHLEFGE FEECAARE+KEETGLDI K+EFL VTNNLFM+QP P
Subjt:  MVSAAEQSNGSK---LDHTAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCP

Query:  AHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPF
        AHYVVVF+RAVL DP QTPLNLEP+KC GWDWYEWD+LPQPLF PIK MVM+GFNPF
Subjt:  AHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPF

A0A6J1HTH5 geranyl diphosphate phosphohydrolase-like2.9e-6678.48Show/hide
Query:  MVSAAEQSNGSK---LDHTAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCP
        M+S  +Q NG+K   L     PSPQVAVAICLLRGK +LMGRRLVSIGNSKYSLPSGHLEFGE FEECAARE+KEETGLDI K+EFL VTNNLF++QP P
Subjt:  MVSAAEQSNGSK---LDHTAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCP

Query:  AHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFP
        AHYVVVF+RAVL  P QTPLNLEP+KC GWDWYEWD+LPQPLF PIK MVM+GFNPFP
Subjt:  AHYVVVFMRAVLTDPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFP

SwissProt top hitse value%identityAlignment
C5BHE7 NAD-capped RNA hydrolase NudC1.2e-0830.83Show/hide
Query:  PQVA--VAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCPAHYVVVFMRAVLTDPTQTPLN
        PQ+A  + + + R   IL+ R      N  Y++ +G +E GE  E+ AAREI EE+ L +  + ++T       +QP P  + +  M A L D     L 
Subjt:  PQVA--VAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCPAHYVVVFMRAVLTDPTQTPLN

Query:  LEPEKCDGWDWYEWDNLPQ--PLFSPIKKMVMD
         +P++    DWY +D LPQ  P+ +  ++++ D
Subjt:  LEPEKCDGWDWYEWDNLPQ--PLFSPIKKMVMD

M4I1C6 Geranyl diphosphate phosphohydrolase5.4e-5469.57Show/hide
Query:  APSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCPAHYVVVFMRAVLTDPTQTPL
        A S +VAV +CLLRG+ +L+GRR  S+G+S +SLPSGHLEFGE FEECAARE+KEET LDI KIE LTVTNNLF+++  P+ YV VFMRAVL DP Q P 
Subjt:  APSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCPAHYVVVFMRAVLTDPTQTPL

Query:  NLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFP
        N+EPE CDGW WYEWDNLP+PLF P+  +V DGFNPFP
Subjt:  NLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFP

Q8BG93 Nucleotide triphosphate diphosphatase NUDT151.5e-1935.92Show/hide
Query:  PQVAVAICLL---RGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCPAHYVVVFMRA-VLTDPTQTP
        P V V + +L     + +L+G+R  S G   + LP GHLEFGE +EECA RE  EE GL +  + F +V N+    +    HYV + M+  V       P
Subjt:  PQVAVAICLL---RGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCPAHYVVVFMRA-VLTDPTQTP

Query:  LNLEPEKCDGWDWYEWDNLP--QPLFSPIKKMVMDGFNPFPQ
         N+EPEK + W+W  W+  P    LF  ++ +   G++PF +
Subjt:  LNLEPEKCDGWDWYEWDNLP--QPLFSPIKKMVMDGFNPFPQ

Q9CA40 Nudix hydrolase 16.2e-5062.59Show/hide
Query:  TAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCPAHYVVVFMRAVLTDPTQT
        T    P+VAV + +L G  IL+GRR  SIGNS ++LP GHLEFGE FEECAARE+ EETGL I K++ LTVTNN+F   P P+HYV V +RAVL DP+Q 
Subjt:  TAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCPAHYVVVFMRAVLTDPTQT

Query:  PLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPF
        P N+EPEKC+GWDWY+W+NLP+PLF P++K+   GFNPF
Subjt:  PLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPF

Q9NV35 Nucleotide triphosphate diphosphatase NUDT151.5e-1937.6Show/hide
Query:  ILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCPAHYVVVFMRA-VLTDPTQTPLNLEPEKCDGWDWYEWD
        +L+G+R  S+G   + LP GHLEFGE +EECA RE  EE  L +  + F +V N+    +    HYV + M+  V       P N+EPEK + W+W  W+
Subjt:  ILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCPAHYVVVFMRA-VLTDPTQTPLNLEPEKCDGWDWYEWD

Query:  NLP--QPLFSPIKKMVMDGFNPFPQ
         LP    LF  ++ +   G++PF +
Subjt:  NLP--QPLFSPIKKMVMDGFNPFPQ

Arabidopsis top hitse value%identityAlignment
AT1G68760.1 nudix hydrolase 14.4e-5162.59Show/hide
Query:  TAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCPAHYVVVFMRAVLTDPTQT
        T    P+VAV + +L G  IL+GRR  SIGNS ++LP GHLEFGE FEECAARE+ EETGL I K++ LTVTNN+F   P P+HYV V +RAVL DP+Q 
Subjt:  TAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCPAHYVVVFMRAVLTDPTQT

Query:  PLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPF
        P N+EPEKC+GWDWY+W+NLP+PLF P++K+   GFNPF
Subjt:  PLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTCTGCGGCTGAACAGAGTAACGGTTCAAAATTAGATCATACGGCGGCGCCGTCCCCCCAAGTAGCCGTGGCCATTTGTTTGTTGCGTGGTAAATGGATTCTTAT
GGGACGTCGACTTGTGTCCATTGGCAACTCCAAATATTCTCTCCCAAGTGGCCATCTCGAATTTGGAGAGAAATTTGAAGAATGTGCAGCAAGAGAAATTAAAGAAGAGA
CGGGTCTAGATATCCACAAGATCGAGTTCTTAACAGTGACTAATAATTTGTTTATGAACCAACCATGTCCAGCCCATTATGTGGTGGTGTTTATGCGAGCAGTACTCACA
GATCCCACACAAACTCCCCTCAATCTTGAGCCTGAGAAATGTGATGGGTGGGATTGGTATGAATGGGACAATCTGCCCCAACCTCTCTTTAGTCCCATCAAGAAAATGGT
GATGGATGGCTTTAATCCTTTCCCACAATAA
mRNA sequenceShow/hide mRNA sequence
TGTGGCCCTATAAATAGACCATCTTCCATAGTCTTTTAACTTCAAACTCAAAAGAGAAAGCCTTCTTTTCCATTTTTATTCTCTCCCCTAACATCTGAGATTCTACGGTT
TGAACAACTTCAAACATGGTGTCTGCGGCTGAACAGAGTAACGGTTCAAAATTAGATCATACGGCGGCGCCGTCCCCCCAAGTAGCCGTGGCCATTTGTTTGTTGCGTGG
TAAATGGATTCTTATGGGACGTCGACTTGTGTCCATTGGCAACTCCAAATATTCTCTCCCAAGTGGCCATCTCGAATTTGGAGAGAAATTTGAAGAATGTGCAGCAAGAG
AAATTAAAGAAGAGACGGGTCTAGATATCCACAAGATCGAGTTCTTAACAGTGACTAATAATTTGTTTATGAACCAACCATGTCCAGCCCATTATGTGGTGGTGTTTATG
CGAGCAGTACTCACAGATCCCACACAAACTCCCCTCAATCTTGAGCCTGAGAAATGTGATGGGTGGGATTGGTATGAATGGGACAATCTGCCCCAACCTCTCTTTAGTCC
CATCAAGAAAATGGTGATGGATGGCTTTAATCCTTTCCCACAATAATCTAAGCTATCCATTCTTGGGTTTGAGAAGGAAAGAATGTTATGTTCCAGCTCTACTTTAACTC
TAAGATTGCATTTTTATTTAATATTAACGTGTTGCACATTTTAAGGAATTTGGCCTCCATGTTGTCGTGTGATTGAAATTGAAATTCAAACTATAGATGT
Protein sequenceShow/hide protein sequence
MVSAAEQSNGSKLDHTAAPSPQVAVAICLLRGKWILMGRRLVSIGNSKYSLPSGHLEFGEKFEECAAREIKEETGLDIHKIEFLTVTNNLFMNQPCPAHYVVVFMRAVLT
DPTQTPLNLEPEKCDGWDWYEWDNLPQPLFSPIKKMVMDGFNPFPQ