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Clc05G25500 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G25500
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNudix hydrolase
Genome locationClcChr05:33242106..33243345
RNA-Seq ExpressionClc05G25500
SyntenyClc05G25500
Gene Ontology termsGO:0006203 - dGTP catabolic process (biological process)
GO:0005829 - cytosol (cellular component)
GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity (molecular function)
InterPro domainsIPR000086 - NUDIX hydrolase domain
IPR015797 - NUDIX hydrolase-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034516.1 nudix hydrolase 1-like [Cucumis melo var. makuwa]5.1e-6675.71Show/hide
Query:  AEQSKGSKSVEAKE-AHTAA-PSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDID
        AEQ       +A E  H AA PSPQVAVAICLLR K ILMGRRLV+IGNSK+SLPSGHLEFG                  ENFEECA REIKEETGLDI 
Subjt:  AEQSKGSKSVEAKE-AHTAA-PSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDID

Query:  NIEFLKVTNNIFMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFPQ
         IEFLKVTNN+FMDQP PAHYVVVFVRAVL +PTQTP+NLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFPQ
Subjt:  NIEFLKVTNNIFMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFPQ

XP_004135122.1 geranyl diphosphate phosphohydrolase [Cucumis sativus]1.5e-6573.45Show/hide
Query:  AEQSKGSKSVEAKE---AHTAAPSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDI
        A+Q+   K V+A E    H A+PSPQVAVAICLL+ K ILMGRRLV+IGNSK+SLPSGHLEFG                  ENFEECA REIKEETGLDI
Subjt:  AEQSKGSKSVEAKE---AHTAAPSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDI

Query:  DNIEFLKVTNNIFMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFP
        + IEFLKVTNN+FMDQP PAHYVVVFVRAVL +PTQTPINLEPEKCDGWDWYEWD LP PLFGPIKKMV DGFNPFP
Subjt:  DNIEFLKVTNNIFMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFP

XP_008446534.1 PREDICTED: nudix hydrolase 1-like [Cucumis melo]5.1e-6675.71Show/hide
Query:  AEQSKGSKSVEAKE-AHTAA-PSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDID
        AEQ       +A E  H AA PSPQVAVAICLLR K ILMGRRLV+IGNSK+SLPSGHLEFG                  ENFEECA REIKEETGLDI 
Subjt:  AEQSKGSKSVEAKE-AHTAA-PSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDID

Query:  NIEFLKVTNNIFMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFPQ
         IEFLKVTNN+FMDQP PAHYVVVFVRAVL +PTQTP+NLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFPQ
Subjt:  NIEFLKVTNNIFMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFPQ

XP_023541815.1 geranyl diphosphate phosphohydrolase-like [Cucurbita pepo subsp. pepo]1.5e-6275.48Show/hide
Query:  PSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKVTNNIFMDQPNPAHY
        PSPQVAVAICLLRGK +LMGRRLV+IGNSK+SLPSGHLEFG                  ENFEECAARE+KEETGLDI+ +EFLKVTNN+F+DQP PAHY
Subjt:  PSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKVTNNIFMDQPNPAHY

Query:  VVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFP
        VVVFVRAVLA+P QTP+NLEP+KC GWDWYEWD+LP+PLFGPIK MVM+GFNPFP
Subjt:  VVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFP

XP_038892917.1 geranyl diphosphate phosphohydrolase [Benincasa hispida]1.2e-7078.41Show/hide
Query:  AEQSKGSKSVEAKEAH-TAAPSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDN
        AEQ+ GSK VEAKE    AAP+PQVAVAICLLRGK ILMGRRLV+IGNSK+SLPSGHLEFG                  ENFEECAARE+KEETGLDI+ 
Subjt:  AEQSKGSKSVEAKEAH-TAAPSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDN

Query:  IEFLKVTNNIFMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFPQ
        IEFLKVTNN+F+DQP  AHYVVVFVRAVLA+PTQTP+NLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFPQ
Subjt:  IEFLKVTNNIFMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFPQ

TrEMBL top hitse value%identityAlignment
A0A0A0KR28 Nudix hydrolase domain-containing protein7.2e-6673.45Show/hide
Query:  AEQSKGSKSVEAKE---AHTAAPSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDI
        A+Q+   K V+A E    H A+PSPQVAVAICLL+ K ILMGRRLV+IGNSK+SLPSGHLEFG                  ENFEECA REIKEETGLDI
Subjt:  AEQSKGSKSVEAKE---AHTAAPSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDI

Query:  DNIEFLKVTNNIFMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFP
        + IEFLKVTNN+FMDQP PAHYVVVFVRAVL +PTQTPINLEPEKCDGWDWYEWD LP PLFGPIKKMV DGFNPFP
Subjt:  DNIEFLKVTNNIFMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFP

A0A1S3BFY2 nudix hydrolase 1-like2.5e-6675.71Show/hide
Query:  AEQSKGSKSVEAKE-AHTAA-PSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDID
        AEQ       +A E  H AA PSPQVAVAICLLR K ILMGRRLV+IGNSK+SLPSGHLEFG                  ENFEECA REIKEETGLDI 
Subjt:  AEQSKGSKSVEAKE-AHTAA-PSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDID

Query:  NIEFLKVTNNIFMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFPQ
         IEFLKVTNN+FMDQP PAHYVVVFVRAVL +PTQTP+NLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFPQ
Subjt:  NIEFLKVTNNIFMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFPQ

A0A5D3CCL5 Nudix hydrolase 1-like2.5e-6675.71Show/hide
Query:  AEQSKGSKSVEAKE-AHTAA-PSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDID
        AEQ       +A E  H AA PSPQVAVAICLLR K ILMGRRLV+IGNSK+SLPSGHLEFG                  ENFEECA REIKEETGLDI 
Subjt:  AEQSKGSKSVEAKE-AHTAA-PSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDID

Query:  NIEFLKVTNNIFMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFPQ
         IEFLKVTNN+FMDQP PAHYVVVFVRAVL +PTQTP+NLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFPQ
Subjt:  NIEFLKVTNNIFMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFPQ

A0A6J1G1K2 geranyl diphosphate phosphohydrolase-like3.7e-6275.97Show/hide
Query:  PSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKVTNNIFMDQPNPAHY
        PSPQVAVAICLLR K +LMGRRLV+IGNSK+SLPSGHLEFG                  ENFEECAARE+KEETGLDI+ +EFLKVTNN+FMDQP PAHY
Subjt:  PSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKVTNNIFMDQPNPAHY

Query:  VVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPF
        VVVFVRAVLA+P QTP+NLEP+KC GWDWYEWD+LPQPLFGPIK MVM+GFNPF
Subjt:  VVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPF

A0A6J1HTH5 geranyl diphosphate phosphohydrolase-like3.7e-6275.48Show/hide
Query:  PSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKVTNNIFMDQPNPAHY
        PSPQVAVAICLLRGK +LMGRRLV+IGNSK+SLPSGHLEFG                  E FEECAARE+KEETGLDI+ +EFLKVTNN+F+DQP PAHY
Subjt:  PSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKVTNNIFMDQPNPAHY

Query:  VVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFP
        VVVFVRAVLA P QTP+NLEP+KC GWDWYEWD+LPQPLFGPIK MVM+GFNPFP
Subjt:  VVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFP

SwissProt top hitse value%identityAlignment
M4I1C6 Geranyl diphosphate phosphohydrolase1.3e-4856.8Show/hide
Query:  GSKSVEAKEAHTAAPSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKV
        G+++V   E    A S +VAV +CLLRG+ +L+GRR  ++G+S FSLPSGHLEFG                  E+FEECAARE+KEET LDI  IE L V
Subjt:  GSKSVEAKEAHTAAPSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKV

Query:  TNNIFMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFP
        TNN+F+D+  P+ YV VF+RAVLA+P Q P N+EPE CDGW WYEWDNLP+PLF P+  +V DGFNPFP
Subjt:  TNNIFMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFP

Q8BG93 Nucleotide triphosphate diphosphatase NUDT157.7e-1733.12Show/hide
Query:  PQVAVAICLL---RGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKVTNNIFMDQPNPAH
        P V V + +L     + +L+G+R  + G   F LP GHLEFG                  E +EECA RE  EE GL + N+ F  V N+ F+++ N  H
Subjt:  PQVAVAICLL---RGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKVTNNIFMDQPNPAH

Query:  YVVVFVRA-VLANPTQTPINLEPEKCDGWDWYEWDNLP--QPLFGPIKKMVMDGFNPFPQ
        YV + ++  V       P N+EPEK + W+W  W+  P    LF  ++ +   G++PF +
Subjt:  YVVVFVRA-VLANPTQTPINLEPEKCDGWDWYEWDNLP--QPLFGPIKKMVMDGFNPFPQ

Q9CA40 Nudix hydrolase 13.0e-4553.5Show/hide
Query:  TAAPSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKVTNNIFMDQPNP
        T    P+VAV + +L G  IL+GRR  +IGNS F+LP GHLEFG                  E+FEECAARE+ EETGL I+ ++ L VTNN+F + P P
Subjt:  TAAPSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKVTNNIFMDQPNP

Query:  AHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPF
        +HYV V +RAVL +P+Q P N+EPEKC+GWDWY+W+NLP+PLF P++K+   GFNPF
Subjt:  AHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPF

Q9NV35 Nucleotide triphosphate diphosphatase NUDT157.7e-1734.27Show/hide
Query:  ILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKVTNNIFMDQPNPAHYVVVFVRA-VLANPTQT
        +L+G+R  ++G   F LP GHLEFG                  E +EECA RE  EE  L + N+ F  V N+ F+++ N  HYV + ++  V       
Subjt:  ILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKVTNNIFMDQPNPAHYVVVFVRA-VLANPTQT

Query:  PINLEPEKCDGWDWYEWDNLP--QPLFGPIKKMVMDGFNPFPQ
        P N+EPEK + W+W  W+ LP    LF  ++ +   G++PF +
Subjt:  PINLEPEKCDGWDWYEWDNLP--QPLFGPIKKMVMDGFNPFPQ

Arabidopsis top hitse value%identityAlignment
AT1G68760.1 nudix hydrolase 12.1e-4653.5Show/hide
Query:  TAAPSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKVTNNIFMDQPNP
        T    P+VAV + +L G  IL+GRR  +IGNS F+LP GHLEFG                  E+FEECAARE+ EETGL I+ ++ L VTNN+F + P P
Subjt:  TAAPSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKVTNNIFMDQPNP

Query:  AHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPF
        +HYV V +RAVL +P+Q P N+EPEKC+GWDWY+W+NLP+PLF P++K+   GFNPF
Subjt:  AHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAACAGAGTAAGGGTTCAAAGTCGGTGGAAGCAAAGGAAGCTCATACGGCGGCGCCGTCCCCGCAAGTAGCCGTGGCCATTTGCTTGTTGCGTGGTAAATGGAT
TCTTATGGGGCGTCGACTCGTAACTATTGGCAACTCCAAATTCTCTCTCCCAAGTGGCCATCTCGAATTTGGTTCGTCCATTCTCTTTTCAATTAATATCAACAAAAATG
AATCCAAGCACTCAAGAGAGAACTTTGAAGAATGTGCTGCAAGAGAAATTAAAGAAGAGACTGGTCTAGATATCGACAACATTGAATTCTTAAAAGTGACCAATAATATA
TTTATGGACCAACCAAATCCAGCCCATTATGTGGTAGTATTCGTGCGGGCAGTATTGGCAAATCCCACCCAAACTCCAATCAATCTTGAGCCTGAGAAATGCGATGGTTG
GGATTGGTATGAGTGGGACAATTTGCCCCAGCCACTGTTTGGTCCTATCAAGAAAATGGTCATGGATGGTTTTAATCCTTTCCCACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAACAGAGTAAGGGTTCAAAGTCGGTGGAAGCAAAGGAAGCTCATACGGCGGCGCCGTCCCCGCAAGTAGCCGTGGCCATTTGCTTGTTGCGTGGTAAATGGAT
TCTTATGGGGCGTCGACTCGTAACTATTGGCAACTCCAAATTCTCTCTCCCAAGTGGCCATCTCGAATTTGGTTCGTCCATTCTCTTTTCAATTAATATCAACAAAAATG
AATCCAAGCACTCAAGAGAGAACTTTGAAGAATGTGCTGCAAGAGAAATTAAAGAAGAGACTGGTCTAGATATCGACAACATTGAATTCTTAAAAGTGACCAATAATATA
TTTATGGACCAACCAAATCCAGCCCATTATGTGGTAGTATTCGTGCGGGCAGTATTGGCAAATCCCACCCAAACTCCAATCAATCTTGAGCCTGAGAAATGCGATGGTTG
GGATTGGTATGAGTGGGACAATTTGCCCCAGCCACTGTTTGGTCCTATCAAGAAAATGGTCATGGATGGTTTTAATCCTTTCCCACAATGAACTAAGATAGTCAAGGTTG
CATTCGAGTTCGGTCGAATTGAAATCACAAATATATACTTTTTTTCTTTTTAATACAAATCACAACTATACCTTTTAATACCTTATTTTATAGAATGTATTAGAACTAAG
CTTGTTGGATATTTAATTTTCTTGCTCTTCAAATCACTAATGTTAGAATTAAAATGGGTGGGAACAAAATGAGAAACGGAAAAGTGTTATGTTCCCGTTCTACTTTAATT
ATAAGATTGTATTTTTATATAATATTGAAGTGTTGCACGTTTGAAAAGGAA
Protein sequenceShow/hide protein sequence
MAEQSKGSKSVEAKEAHTAAPSPQVAVAICLLRGKWILMGRRLVTIGNSKFSLPSGHLEFGSSILFSININKNESKHSRENFEECAAREIKEETGLDIDNIEFLKVTNNI
FMDQPNPAHYVVVFVRAVLANPTQTPINLEPEKCDGWDWYEWDNLPQPLFGPIKKMVMDGFNPFPQ