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Clc05G26190 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G26190
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionBHLH domain-containing protein
Genome locationClcChr05:33803846..33806977
RNA-Seq ExpressionClc05G26190
SyntenyClc05G26190
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:2000112 - regulation of cellular macromolecule biosynthetic process (biological process)
GO:0090575 - RNA polymerase II transcription factor complex (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR015660 - Achaete-scute transcription factor-related
IPR036638 - Helix-loop-helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573268.1 Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma subsp. sororia]1.2e-4255.9Show/hide
Query:  MANNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEAR-TVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEET
        MANN I C  S++ D+KLIE NRR EMK L S L+SLVP++SS EA  T++D+LE+ATNYIK+L+ ++EKLKEKKEKLM   K+ E E  R +  K    
Subjt:  MANNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEAR-TVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEET

Query:  KPNPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPE--DGERICETVKNLVSEYKD
            +LL+QV+AHQ+ S+L  LLTTGSDYH +L+Q+L LL +NGT  +++N + VK RVFH I+A++ GEG   E  +GERICETVK  VS+YKD
Subjt:  KPNPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPE--DGERICETVKNLVSEYKD

XP_004146605.1 transcription factor bHLH162 isoform X1 [Cucumis sativus]1.0e-5462.94Show/hide
Query:  NNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEA-RTVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEETKP
        +NPIRC P+ Q+++K +E NRRKEMK L STLNSL+P+++S EA RTV D+LEDATNYIKELQ +I+KLKEKKEKLMG  +  E E  RR R   +ETK 
Subjt:  NNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEA-RTVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEETKP

Query:  NPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEG-MGPEDGERICETVKNLVSEYKDGECTL
         PKL + VKAHQ+ S++ + LTTGSDYH  LQQ+L LL DNG + L+VNQ+    RVFH I A+VDGEG +G  DGERICETVK  VSEYKDGEC++
Subjt:  NPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEG-MGPEDGERICETVKNLVSEYKDGECTL

XP_008442634.2 PREDICTED: transcription factor bHLH118-like [Cucumis melo]1.4e-5965.15Show/hide
Query:  NNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEA-RTVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELE--DGRRNRKKHEET
        +NPIRC P+ Q+D+K +E NRRKEMK L STLNSL+P+ +S+EA RTV D+LEDATNYIKELQ +I+KLKEKKE+LMGK KM E E  +GRR R+   ET
Subjt:  NNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEA-RTVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELE--DGRRNRKKHEET

Query:  KPNPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPEDGERICETVKNLVSEYKDGECTL
        K  PKLLLQVKAHQ+ S++ + LTTGSDYH ILQQ+L LL DNG + L+VNQ+    RVFH I A+VDGEG+GP DGERIC+TVK  VS+YKD +C++
Subjt:  KPNPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPEDGERICETVKNLVSEYKDGECTL

XP_023542777.1 uncharacterized protein LOC111802586 [Cucurbita pepo subsp. pepo]5.2e-4356.41Show/hide
Query:  MANNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEAR-TVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEET
        MANN I C  S++ D+KLIE NRR EMK L S L+SLVP++SS EA  T++D+LE+ATNYIK+L+ ++EKLKEKKEKLM   K+ E E  RR+  K    
Subjt:  MANNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEAR-TVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEET

Query:  KPNPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPE--DGERICETVKNLVSEYKD
            +LL+QV+AHQ+ S+L  LLTTGS+YH +L+QIL LL +NGT  +++N + VK RVFH I+A++ GEG   E  +GERICETVK  VS+YKD
Subjt:  KPNPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPE--DGERICETVKNLVSEYKD

XP_038876951.1 transcription factor bHLH162-like [Benincasa hispida]7.7e-5562.75Show/hide
Query:  MANNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEARTVVDELEDATNYIKELQNHIEKLKEKKEKL------MGKIKMVELEDGRRNRK
        MANNPI C PS     KLIE N R+EMK L STLNSL+P+++S EARTV D+LE+ATNYIKELQN+IE+LKEKKEKL       GK KM   ED +R + 
Subjt:  MANNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEARTVVDELEDATNYIKELQNHIEKLKEKKEKL------MGKIKMVELEDGRRNRK

Query:  KHEETKPNPKLLLQVKAHQLDSTLHILLTTG-SDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPEDGERICETVKNLVSEYKDG
        KHE     P LLLQVKAH++ S++ + LTTG SDYH ILQQI+ LL  NG   L++NQ+ ++HR FH I A+VDGEGM PEDGERICETVKN VS+YKDG
Subjt:  KHEETKPNPKLLLQVKAHQLDSTLHILLTTG-SDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPEDGERICETVKNLVSEYKDG

Query:  ECTL
        +C+L
Subjt:  ECTL

TrEMBL top hitse value%identityAlignment
A0A0A0LUL3 BHLH domain-containing protein4.9e-5562.94Show/hide
Query:  NNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEA-RTVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEETKP
        +NPIRC P+ Q+++K +E NRRKEMK L STLNSL+P+++S EA RTV D+LEDATNYIKELQ +I+KLKEKKEKLMG  +  E E  RR R   +ETK 
Subjt:  NNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEA-RTVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEETKP

Query:  NPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEG-MGPEDGERICETVKNLVSEYKDGECTL
         PKL + VKAHQ+ S++ + LTTGSDYH  LQQ+L LL DNG + L+VNQ+    RVFH I A+VDGEG +G  DGERICETVK  VSEYKDGEC++
Subjt:  NPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEG-MGPEDGERICETVKNLVSEYKDGECTL

A0A1S3B660 transcription factor bHLH118-like6.6e-6065.15Show/hide
Query:  NNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEA-RTVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELE--DGRRNRKKHEET
        +NPIRC P+ Q+D+K +E NRRKEMK L STLNSL+P+ +S+EA RTV D+LEDATNYIKELQ +I+KLKEKKE+LMGK KM E E  +GRR R+   ET
Subjt:  NNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEA-RTVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELE--DGRRNRKKHEET

Query:  KPNPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPEDGERICETVKNLVSEYKDGECTL
        K  PKLLLQVKAHQ+ S++ + LTTGSDYH ILQQ+L LL DNG + L+VNQ+    RVFH I A+VDGEG+GP DGERIC+TVK  VS+YKD +C++
Subjt:  KPNPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPEDGERICETVKNLVSEYKDGECTL

A0A6J1GT92 uncharacterized protein LOC1114572296.8e-4154.87Show/hide
Query:  MANNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEAR-TVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEET
        MANN I    S++ D+KLIE NRR EMK L S L+SLVP++SS EA  T++D+LE+ATNYIK+L+ ++EKLKEKKEKLM   K+ E E  R +  K    
Subjt:  MANNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEAR-TVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEET

Query:  KPNPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPE--DGERICETVKNLVSEYKD
            +LL+QV+AHQ+ S+L  LLTT SDYH +L+Q+L LL +NGT  +++N + VK RVFH I+A++ GEG   E  +GERICETVK  VS+YKD
Subjt:  KPNPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPE--DGERICETVKNLVSEYKD

A0A6J1K2Y3 transcription factor bHLH167-like7.3e-4354.87Show/hide
Query:  MANNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEAR-TVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEET
        MANN I C  S++ D+KLIE NRR EMK L S L+SLVP++SS EA  T++D+LE+ATNYIK+L+ ++EKLKEK+EKLMG               +  ET
Subjt:  MANNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEAR-TVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEET

Query:  KPNPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPED--GERICETVKNLVSEYKD
        K   +LL+QV+AHQ+ S+L +LLTTGSDY  +L QIL LL +NGT  +++N + VK RVFH I+A++ GEG   E   GERICETVK  VS+YKD
Subjt:  KPNPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPED--GERICETVKNLVSEYKD

A0A6J1K483 transcription factor bHLH162-like2.6e-4050Show/hide
Query:  MANNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEARTVV-DELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEET
        MA+N I C  S++TDQ++IE NRR EMK LLS L+SLVP+++S E  T + D+LE+ATNYIK+L+ ++EKLKEK+EKLMG              K    +
Subjt:  MANNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEARTVV-DELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEET

Query:  KPNPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPE--DGERICETVKNLVSEYKDGECTL
        +   ++++QV+AH + S+L ILLTTGSDYH +L+QI+ LL +NGT+ + +NQ+ V +R FH I+A++ GEG   E   GERICE VK  VS YKD + T+
Subjt:  KPNPKLLLQVKAHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPE--DGERICETVKNLVSEYKDGECTL

SwissProt top hitse value%identityAlignment
F4JIJ7 Transcription factor bHLH1627.3e-1632.96Show/hide
Query:  SSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEARTVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEETKPNPKLLLQVK
        S   D+K +E NRR +MK L S L SL+PH SS E  T+ D+L++A NYIK+LQ ++EK +E+K  L+    + +L     +          P+ L +++
Subjt:  SSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEARTVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEETKPNPKLLLQVK

Query:  AHQLDSTLHILLTTGSDYHPILQQIL-LLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMG-----PEDGERICETV
          +  S  HI L T  ++  +  +I+ +L  + G +  H   + V   VFHT+  KV+    G     PE  E+I  +V
Subjt:  AHQLDSTLHILLTTGSDYHPILQQIL-LLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMG-----PEDGERICETV

Arabidopsis top hitse value%identityAlignment
AT4G20970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein5.2e-1732.96Show/hide
Query:  SSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEARTVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEETKPNPKLLLQVK
        S   D+K +E NRR +MK L S L SL+PH SS E  T+ D+L++A NYIK+LQ ++EK +E+K  L+    + +L     +          P+ L +++
Subjt:  SSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEARTVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEETKPNPKLLLQVK

Query:  AHQLDSTLHILLTTGSDYHPILQQIL-LLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMG-----PEDGERICETV
          +  S  HI L T  ++  +  +I+ +L  + G +  H   + V   VFHT+  KV+    G     PE  E+I  +V
Subjt:  AHQLDSTLHILLTTGSDYHPILQQIL-LLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMG-----PEDGERICETV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAACAACCCTATCCGTTGTGTACCATCTTCACAAACCGATCAAAAACTCATAGAGACGAATCGAAGAAAGGAAATGAAAGAGCTTCTCTCAACACTCAATTCCCT
CGTCCCCCATGAAAGTTCAAAGGAAGCAAGAACAGTGGTGGATGAGTTAGAAGACGCCACGAATTACATAAAAGAATTGCAGAACCACATTGAGAAACTAAAAGAAAAAA
AAGAGAAGCTAATGGGGAAAATTAAAATGGTTGAGTTAGAAGATGGAAGAAGAAATAGAAAGAAACATGAAGAAACCAAACCCAACCCCAAATTATTGTTGCAAGTTAAA
GCTCATCAACTGGATTCTACACTGCACATCCTTTTGACAACTGGATCTGATTATCACCCTATTCTTCAACAAATCCTTCTCCTCCTCCATGATAATGGAACTGACACCCT
CCATGTCAATCAGACAAGAGTCAAACATCGGGTTTTTCACACTATTGTAGCTAAGGTGGATGGAGAAGGAATGGGGCCAGAAGATGGTGAAAGGATTTGTGAGACAGTGA
AGAATTTAGTTTCAGAGTACAAAGATGGCGAATGCACTCTTTAA
mRNA sequenceShow/hide mRNA sequence
CTTTAATCAATGAGTAATAATGAGGTGGAGCATACACCCTACCTAACCCCACATTTTTTTTTCCTTTATACACACAATAGAGAAATTAAAAACAGTCCATTAAAAAAATT
ACCTAATATAGGAGAGAAAAAAAAAAGAGATTATTGTGTGAAGGTTGTGAAGCTCTGAGTAATGGCGAACAACCCTATCCGTTGTGTACCATCTTCACAAACCGATCAAA
AACTCATAGAGACGAATCGAAGAAAGGAAATGAAAGAGCTTCTCTCAACACTCAATTCCCTCGTCCCCCATGAAAGTTCAAAGGAAGCAAGAACAGTGGTGGATGAGTTA
GAAGACGCCACGAATTACATAAAAGAATTGCAGAACCACATTGAGAAACTAAAAGAAAAAAAAGAGAAGCTAATGGGGAAAATTAAAATGGTTGAGTTAGAAGATGGAAG
AAGAAATAGAAAGAAACATGAAGAAACCAAACCCAACCCCAAATTATTGTTGCAAGTTAAAGCTCATCAACTGGATTCTACACTGCACATCCTTTTGACAACTGGATCTG
ATTATCACCCTATTCTTCAACAAATCCTTCTCCTCCTCCATGATAATGGAACTGACACCCTCCATGTCAATCAGACAAGAGTCAAACATCGGGTTTTTCACACTATTGTA
GCTAAGGTGGATGGAGAAGGAATGGGGCCAGAAGATGGTGAAAGGATTTGTGAGACAGTGAAGAATTTAGTTTCAGAGTACAAAGATGGCGAATGCACTCTTTAATAATA
TTTCGACCACAACGTTAAACTGCTCGTGAAGATTTATGATGTCTTTTGTCCTTTTTATTTTATTTTATTTTTATTGATAATGCTTCAAATCAAAACATTCAATAGTTTGC
ATTTATTGTAATGCATTATAACCCTTTGCCATGGTGAACTTCTCAGACAATTATTTGCTTCCTTATATTTATTCATTTAAAGAGGACTTTGCCTTTTCTTTTAGGTCAAA
TAAGGAGAAACATAACGATATTCAAACCTCTCATTCTTAGAGATGAGATGAAATTTTGACTTATTTTATTTTATTTTGTAACTCAACAATTTAT
Protein sequenceShow/hide protein sequence
MANNPIRCVPSSQTDQKLIETNRRKEMKELLSTLNSLVPHESSKEARTVVDELEDATNYIKELQNHIEKLKEKKEKLMGKIKMVELEDGRRNRKKHEETKPNPKLLLQVK
AHQLDSTLHILLTTGSDYHPILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGPEDGERICETVKNLVSEYKDGECTL