CuGenDBv2

Gene ID	Clc05G26380
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	RNA-binding protein
Genome location	ClcChr05:33929300..33932125
RNA-Seq Expression	Clc05G26380
Synteny	Clc05G26380
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6601448.1 Galactoside 2-alpha-L-fucosyltransferase, partial [Cucurbita argyrosperma subsp. sororia]

3.4e-92

93.62

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Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLT+TRKLVKGLAKAEPIWLKAMEQAPP TFPR+DGT+KTI+LPEDVYVKKFF+KHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRG-GW
        +AMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFF+P+IKEIAQRLKEERAAE+Q+RMRG GW
Subjt:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRG-GW

KAG7032230.1 hypothetical protein SDJN02_06273 [Cucurbita argyrosperma subsp. argyrosperma]

9.8e-92

93.09

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Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLT+TRKLVKGLAKAEPIWLKAMEQAPP TFPR+DGT+KTI+LPEDVYV+KFF+KHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRG-GW
        +AMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFF+P+IKEIAQRLKEERAAE+Q+RMRG GW
Subjt:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRG-GW

XP_022957544.1 uncharacterized protein LOC111458914 [Cucurbita moschata]

3.4e-92

93.62

Show/hide

Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLT+TRKLVKGLAKAEPIWLKAMEQAPP TFPR+DGT+KTI+LPEDVYVKKFF+KHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRG-GW
        +AMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFF+P+IKEIAQRLKEERAAE+Q+RMRG GW
Subjt:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRG-GW

XP_022996766.1 uncharacterized protein LOC111491881 [Cucurbita maxima]

2.8e-91

93.09

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Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLL++TRKLVKGLAKAEPIWLKAMEQAPP TFPR+DG VKTI+LPEDVYVKKFF+KHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRG-GW
        +AMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFF+P+IKEIAQRLKEERAAE+Q+RMRG GW
Subjt:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRG-GW

XP_038891818.1 uncharacterized protein LOC120081194 [Benincasa hispida]

1.1e-90

92.51

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Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPP TFPRVDGTVKTI+LPEDVYVKKFF+KHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGV+EE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRGGW
        +AMA+ANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEER FVRDRFF+P+IKEIAQRLKEERAAE+QER +  W
Subjt:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRGGW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQQ3 Uncharacterized protein

1.9e-85

88.71

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Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLTKTRKLVKGLAKAEP+WLKAMEQAPP +FPRVDGT+KTI+LPEDVYVKKFFKKHPDS Y DAIKFC F+PPPARIF  RVLELKEQGV+EE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRGG
        +AM VANMEYRAEKK KK AYSRLKQIARLQGKKPP NPYPSAIKEIQAEERKFVRDRFFDP+IKEIAQRLKEERAAE+QER  GG
Subjt:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRGG

A0A6J1DDQ7 uncharacterized protein LOC111019147

5.2e-91

92.47

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Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLL +TRKLVKGLAKAEP+WLKAMEQAPP TFPRVDGT+KTISLPEDVYVKKFF+KHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGV EE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRGG
        +AMAVANMEYRAEKK KKKAY+RLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFF+P+IKEIAQRLKEERAAE+Q+RMRGG
Subjt:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRGG

A0A6J1GZF0 uncharacterized protein LOC111458914

1.6e-92

93.62

Show/hide

Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLT+TRKLVKGLAKAEPIWLKAMEQAPP TFPR+DGT+KTI+LPEDVYVKKFF+KHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRG-GW
        +AMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFF+P+IKEIAQRLKEERAAE+Q+RMRG GW
Subjt:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRG-GW

A0A6J1KC52 uncharacterized protein LOC111491881

1.4e-91

93.09

Show/hide

Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLL++TRKLVKGLAKAEPIWLKAMEQAPP TFPR+DG VKTI+LPEDVYVKKFF+KHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRG-GW
        +AMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFF+P+IKEIAQRLKEERAAE+Q+RMRG GW
Subjt:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRG-GW

A0A7N2LBH9 Uncharacterized protein

2.8e-84

86.02

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Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSF+KGDLLT+TRKLVKGLAK++PIWLKAME APPATFPR DG VK ISLPEDVY+KKFF+KHPDSK+EDAIK CSFDPPPAR+FGLRVL+LKEQGVSEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRGG
        +AMAVA+MEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERK+VRDRFF+P+I EI Q+LKEE+AAE Q+R RGG
Subjt:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRGG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G26750.1 unknown protein

8.9e-51

54.05

Show/hide

Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MS+MKGDLL+KTR+LV GLA  EP+WLKAME +PP  FPR +G ++ I LPED YV+KF  KHP +K +D  K  +F P  AR++G RVLELKE G+SE 
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRG
         AM+VANMEY +E+K  KKAY RLK++A +Q K PPP PYPSA K +  + +   +DRF  P ++ +  +LK E+   LQ+R  G
Subjt:  QAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCATTCATGAAAGGAGACTTGTTAACTAAGACTAGAAAGCTCGTCAAGGGCTTGGCCAAAGCAGAACCCATTTGGCTCAAAGCCATGGAACAGGCGCCACCTGCTAC
ATTTCCTCGAGTAGATGGAACAGTGAAGACAATCAGTCTTCCTGAGGATGTATATGTAAAAAAGTTCTTCAAGAAACATCCAGATTCAAAATATGAAGATGCCATCAAGT
TCTGTAGTTTCGATCCTCCTCCAGCCCGAATATTTGGCTTGCGGGTGCTTGAACTGAAGGAACAGGGTGTCAGTGAGGAGCAAGCCATGGCAGTAGCCAATATGGAATAC
CGGGCAGAGAAGAAGGCAAAAAAGAAGGCTTACTCTCGCTTGAAGCAAATTGCACGTCTTCAAGGGAAGAAACCTCCTCCTAACCCTTATCCAAGTGCTATTAAGGAGAT
ACAAGCTGAGGAAAGAAAATTTGTCCGTGATCGTTTCTTTGACCCCGAAATTAAAGAGATTGCACAAAGGTTGAAGGAGGAGAGAGCAGCTGAATTGCAGGAAAGAATGC
GAGGCGGCTGGTGA

mRNA sequence

Show/hide mRNA sequence

AACAAGAGCTTTTTTAACTTCAAAGGACGAAAGAGAGATTTCACACCCTCAAGAGTCAAAAGTCTAATCCCCTTTTCTTTTACCTTTTTGGTAATTAACCAAAACAATTT
CTACTTAAACCGTTTATACGAACCCGACCCGGCGGATCGGTTTTCAACTGGTCCGGCGGCTCGATTTCCGGCGGTTTTCTTCCAATAAGCCTTCTTGTTCTTGCCCAGTT
CTCGAACTAGAGATTGGCTGAACTCTCTCTAGTTTCATCTCTGCGTCCGATCATTGGATCGATTCGCAATCCAAAAAGGAGGGAGCTATGTCATTCATGAAAGGAGACTT
GTTAACTAAGACTAGAAAGCTCGTCAAGGGCTTGGCCAAAGCAGAACCCATTTGGCTCAAAGCCATGGAACAGGCGCCACCTGCTACATTTCCTCGAGTAGATGGAACAG
TGAAGACAATCAGTCTTCCTGAGGATGTATATGTAAAAAAGTTCTTCAAGAAACATCCAGATTCAAAATATGAAGATGCCATCAAGTTCTGTAGTTTCGATCCTCCTCCA
GCCCGAATATTTGGCTTGCGGGTGCTTGAACTGAAGGAACAGGGTGTCAGTGAGGAGCAAGCCATGGCAGTAGCCAATATGGAATACCGGGCAGAGAAGAAGGCAAAAAA
GAAGGCTTACTCTCGCTTGAAGCAAATTGCACGTCTTCAAGGGAAGAAACCTCCTCCTAACCCTTATCCAAGTGCTATTAAGGAGATACAAGCTGAGGAAAGAAAATTTG
TCCGTGATCGTTTCTTTGACCCCGAAATTAAAGAGATTGCACAAAGGTTGAAGGAGGAGAGAGCAGCTGAATTGCAGGAAAGAATGCGAGGCGGCTGGTGATAGAATCTT
CCAACCTCCCATCTCTGCTTCTCGAAACTAGCTTTTGCAATAATTTTGGCAGTTCATTAATAGGGAATAACACATAATTTTTAGATTCAAGCGAACACCACATCTGAAGC
ATTGGATCAAATATCACATTGTTGGGCAACACTATGACTGAAAAAGACAAGGTGAATCTGCTATCAACGTCGATAACCCTCCGTGCAACACTAAGTAGTGTAATTTAATT
TGCAAGTAATTGAATTAGTTCTTTTAAAAAAAATATTAATGTTATTGGCTTTTACTTAGAGTAGTGGCCACCTAGTGGGATTAATTTTAGAGTTTTAAGGTTAGTGCATG
AGTGGATAGTTTCTTATTTGCCTATAAATACTTGTAATATTTCCAATTCAATGAACTCCATAAAACTCAATTGAAGCACCTGATCTTTGGTGCATTATTTCTCTCTTGTT
TCTACTTTGTTCT

Protein sequence

Show/hide protein sequence

MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPATFPRVDGTVKTISLPEDVYVKKFFKKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEEQAMAVANMEY
RAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFDPEIKEIAQRLKEERAAELQERMRGGW

Clc05G26380 (gene) of Watermelon (cordophanus) v2 genome