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Clc05G26770 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G26770
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiontranscription factor PRE6-like
Genome locationClcChr05:34176570..34178737
RNA-Seq ExpressionClc05G26770
SyntenyClc05G26770
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135185.1 transcription factor PRE6 [Cucumis sativus]1.6e-3796.84Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

XP_008446331.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]3.5e-3795.79Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

XP_022151230.1 transcription factor PRE6-like [Momordica charantia]4.6e-3795.79Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

XP_022968308.1 transcription factor PRE6-like [Cucurbita maxima]2.5e-3592.63Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

XP_038893351.1 transcription factor PRE6-like [Benincasa hispida]4.9e-3998.95Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

TrEMBL top hitse value%identityAlignment
A0A0A0KQJ7 Transcription regulator7.6e-3896.84Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

A0A1S3BFH5 transcription factor PRE6-like1.7e-3795.79Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

A0A6J1DAM4 transcription factor PRE6-like2.2e-3795.79Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

A0A6J1G268 transcription factor PRE6-like1.6e-3592.63Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

A0A6J1HXN1 transcription factor PRE6-like1.2e-3592.63Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI67.1e-2570.53Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+R SRSR+SG  S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIRSL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

Q0DUR2 Transcription factor ILI67.1e-2570.53Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+R SRSR+SG  S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIRSL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

Q8GW32 Transcription factor PRE61.2e-2778.49Show/hide
Query:  SARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        S RSSRSR+SG  S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+L REVDDLSDRLSELLASTD  SA+AAIIRSLL
Subjt:  SARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

Q9CA64 Transcription factor PRE34.6e-2469.15Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        MS R SRSR+S   SR IS+DQI DLI KLQQL+PE+R+ R S +VSA++VLQ+TCNYIR+L REVDDLS+RLSELLA++D  +AQAA+IRSLL
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

Q9LXG5 Transcription factor PRE21.2e-2468.89Show/hide
Query:  SSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        SSR  R    S  ISDDQI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +E DDLSDRL++LL S DP S QAA+IRSL+
Subjt:  SSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein8.3e-2978.49Show/hide
Query:  SARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        S RSSRSR+SG  S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+L REVDDLSDRLSELLASTD  SA+AAIIRSLL
Subjt:  SARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 13.3e-2569.15Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        MS R SRSR+S   SR IS+DQI DLI KLQQL+PE+R+ R S +VSA++VLQ+TCNYIR+L REVDDLS+RLSELLA++D  +AQAA+IRSLL
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein3.6e-2467.42Show/hide
Query:  RSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        RSR++   SR ISDDQ+ DL+SKL+Q +PEI   R S +VSASKVLQETCNYIR L REVD+LSDRLS+LL S D +S +AA+IRSLLM
Subjt:  RSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

AT3G47710.1 BANQUO 33.1e-2363.16Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+R SRSR++G  +  I+D+QI DL+ +L +L+PE+ N R S +VSAS+VLQETC+YIR+L +EVDDLS+RLS+LL STD  SAQAA+IRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

AT5G15160.1 BANQUO 28.6e-2668.89Show/hide
Query:  SSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        SSR  R    S  ISDDQI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +E DDLSDRL++LL S DP S QAA+IRSL+
Subjt:  SSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGCCAGAAGCTCGCGTTCTAGACGCTCGGGTGTTCCTTCAAGGAACATTTCTGACGACCAAATTGCTGACTTGATCTCAAAATTACAGCAGCTCATCCCTGAGAT
TCGCAATGGACGTTCCTCCTCCAGGGTATCAGCTTCAAAGGTTCTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGATGATTTAAGCGATCGATTAT
CGGAGCTATTGGCATCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA
mRNA sequenceShow/hide mRNA sequence
GGGGGGGGGGAATCTGACAAAGTTTTCTCCTAATTTTGAAAGAAACAAAAACAATGTCCGCCAGAAGCTCGCGTTCTAGACGCTCGGGTGTTCCTTCAAGGAACATTTCT
GACGACCAAATTGCTGACTTGATCTCAAAATTACAGCAGCTCATCCCTGAGATTCGCAATGGACGTTCCTCCTCCAGGGTATCAGCTTCAAAGGTTCTACAAGAGACTTG
CAACTACATAAGAAGCTTACAAAGAGAGGTGGATGATTTAAGCGATCGATTATCGGAGCTATTGGCATCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCT
TACTTATGTAATAATATTAATCTTCCCAAATTCCCTATGTTTCTTCTTTTATACACGATTTGCTTTTCACCAAGCTCACCCCTACTACCAGGCATGCAATTAAACTAATA
TAAAATATATAAAGTCGTAGAATAAAAGGGATTGTGTAGACTTAATTTACTTTAATTTCTCTCTTATATATATAATTAATTAAATTTAGTTGCGAAATGGTGAGAAGAAA
TTATGTGTACGCATGAAAGCTGGGCGAATATATATTATATTTGTTTCCATAATATATGTTATAAGGTTAATTAATTTTGCATGTGCTTCAGGTTTATTTTTATATTATCA
TTATTTCTTTAATTCCTTTCTTAGTGTAAACGTTGAACCTATTATTGTTGCAGCTTTTTAAAGAAAGTCTTTGTGTGGCACATAAGAAGAGGAATGTTTTTGTGCCTTTT
CCCTTCGGAACAAAATCGTTTAGATCGATCAGTAAATTTTCCAAGCATGTGAAAATCTTTGCACGTGCCAATTGATATATGTAATTTTATATTCCTATGCAATTTTCTTA
GTTATTTATTAATTAGAGTGGCAGGGACAGCCATCTATTAAGAAACATTTTTCTACCTACCATCCTTTTGTTTTGAAATTGAATCATATATATAATTAAACGATGAAGAA
TGCATAAATAAAAAAGGTTGTATAAACCCTTTCAGATATACATTAATG
Protein sequenceShow/hide protein sequence
MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM