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Clc05G27340 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G27340
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1
Genome locationClcChr05:34660031..34662285
RNA-Seq ExpressionClc05G27340
SyntenyClc05G27340
Gene Ontology termsGO:0010468 - regulation of gene expression (biological process)
InterPro domainsIPR039349 - Protein PLASTID REDOX INSENSITIVE 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008446243.1 PREDICTED: uncharacterized protein LOC103489034 isoform X1 [Cucumis melo]3.1e-4084.91Show/hide
Query:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV
        MA YGCALVS I VSPAKITSFNG HYP FS FP FVKP VN TLTSS IYRATPI ASYVYPEPIPEFAEVETQKFKEQLS KLAK  ETFGND DSVV
Subjt:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV

Query:  DVCSKL
        DVCSK+
Subjt:  DVCSKL

XP_008446244.1 PREDICTED: uncharacterized protein LOC103489034 isoform X2 [Cucumis melo]5.2e-4085.71Show/hide
Query:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV
        MA YGCALVS I VSPAKITSFNG HYP FS FP FVKP VN TLTSS IYRATPI ASYVYPEPIPEFAEVETQKFKEQLS KLAK  ETFGND DSVV
Subjt:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV

Query:  DVCSK
        DVCSK
Subjt:  DVCSK

XP_008446245.1 PREDICTED: uncharacterized protein LOC103489034 isoform X3 [Cucumis melo]1.8e-4085.85Show/hide
Query:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV
        MA YGCALVS I VSPAKITSFNG HYP FS FP FVKP VN TLTSS IYRATPI ASYVYPEPIPEFAEVETQKFKEQLS KLAK  ETFGND DSVV
Subjt:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV

Query:  DVCSKL
        DVCSKL
Subjt:  DVCSKL

XP_011655644.1 uncharacterized protein LOC101211725 isoform X2 [Cucumis sativus]2.4e-3781.13Show/hide
Query:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV
        MA YG ALVS + VSPAKI  FNG HYP F  FP FVKP VN TLTSS IYRATPI ASYVYPEPIPEFAEVETQKFKEQLS KLAK  ETFGND DSVV
Subjt:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV

Query:  DVCSKL
        DVCSKL
Subjt:  DVCSKL

XP_038891536.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Benincasa hispida]5.1e-4388.68Show/hide
Query:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV
        MA YGCALV  IAVSPAKITSFNG HYP FS+FP FVKPFVN TLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLS KLAK  ETFGNDLDSVV
Subjt:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV

Query:  DVCSKL
        DVCSK+
Subjt:  DVCSKL

TrEMBL top hitse value%identityAlignment
A0A1S3BEK8 uncharacterized protein LOC103489034 isoform X11.5e-4084.91Show/hide
Query:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV
        MA YGCALVS I VSPAKITSFNG HYP FS FP FVKP VN TLTSS IYRATPI ASYVYPEPIPEFAEVETQKFKEQLS KLAK  ETFGND DSVV
Subjt:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV

Query:  DVCSKL
        DVCSK+
Subjt:  DVCSKL

A0A1S3BEL0 uncharacterized protein LOC103489034 isoform X22.5e-4085.71Show/hide
Query:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV
        MA YGCALVS I VSPAKITSFNG HYP FS FP FVKP VN TLTSS IYRATPI ASYVYPEPIPEFAEVETQKFKEQLS KLAK  ETFGND DSVV
Subjt:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV

Query:  DVCSK
        DVCSK
Subjt:  DVCSK

A0A1S3BF95 uncharacterized protein LOC103489034 isoform X38.7e-4185.85Show/hide
Query:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV
        MA YGCALVS I VSPAKITSFNG HYP FS FP FVKP VN TLTSS IYRATPI ASYVYPEPIPEFAEVETQKFKEQLS KLAK  ETFGND DSVV
Subjt:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV

Query:  DVCSKL
        DVCSKL
Subjt:  DVCSKL

A0A5A7SZ04 Uncharacterized protein1.5e-4084.91Show/hide
Query:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV
        MA YGCALVS I VSPAKITSFNG HYP FS FP FVKP VN TLTSS IYRATPI ASYVYPEPIPEFAEVETQKFKEQLS KLAK  ETFGND DSVV
Subjt:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV

Query:  DVCSKL
        DVCSK+
Subjt:  DVCSKL

A0A6J1JDH3 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X13.3e-3273.58Show/hide
Query:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV
        MA Y C LVS IAVSPAK T FNG +YP FS      KPFVN TLTSS IYRATP  AS VY +PIPEFAEVET+KFKEQLS KLAK  ETFGNDLDSVV
Subjt:  MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVV

Query:  DVCSKL
        +VCSK+
Subjt:  DVCSKL

SwissProt top hitse value%identityAlignment
B6UFC7 Protein PLASTID REDOX INSENSITIVE 2, chloroplastic4.3e-0545.83Show/hide
Query:  YVYPEPIPEFAEVETQKFKEQLSNKL-AKHHETFGNDLDSVVDVCSKL
        Y +P+PIPEFAE ET KF+E ++ +L  K  + FG+ ++ +VDVC+++
Subjt:  YVYPEPIPEFAEVETQKFKEQLSNKL-AKHHETFGNDLDSVVDVCSKL

Q6H612 Protein PLASTID REDOX INSENSITIVE 2, chloroplastic2.8e-0445.83Show/hide
Query:  YVYPEPIPEFAEVETQKFKEQLSNKL-AKHHETFGNDLDSVVDVCSKL
        Y +P+PIPEFA  ET KFKE +  +L  K  + FG  ++ +VDVC+++
Subjt:  YVYPEPIPEFAEVETQKFKEQLSNKL-AKHHETFGNDLDSVVDVCSKL

Q9XIK0 Protein PLASTID REDOX INSENSITIVE 2, chloroplastic1.4e-0642.25Show/hide
Query:  VKPFVNSTLT-SSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKL
        V+ F  S+L+   F+ RA    A Y +P+PIPEFAE ET+KF++ + NKL+K  + F + +D +V VC+++
Subjt:  VKPFVNSTLT-SSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKL

Arabidopsis top hitse value%identityAlignment
AT1G10522.1 unknown protein9.6e-0842.25Show/hide
Query:  VKPFVNSTLT-SSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKL
        V+ F  S+L+   F+ RA    A Y +P+PIPEFAE ET+KF++ + NKL+K  + F + +D +V VC+++
Subjt:  VKPFVNSTLT-SSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKL

AT1G10522.2 unknown protein9.6e-0842.25Show/hide
Query:  VKPFVNSTLT-SSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKL
        V+ F  S+L+   F+ RA    A Y +P+PIPEFAE ET+KF++ + NKL+K  + F + +D +V VC+++
Subjt:  VKPFVNSTLT-SSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTCTACGGTTGTGCTCTGGTCTCTCCCATTGCAGTTTCTCCCGCCAAGATCACAAGCTTCAACGGTTTTCACTACCCACCATTTTCCTCTTTCCCTCCTTTCGT
AAAGCCCTTCGTTAATTCTACCTTAACTTCGTCCTTCATTTACAGAGCCACTCCGATCCCCGCCAGCTATGTTTACCCTGAACCGATACCGGAATTTGCAGAAGTTGAAA
CCCAGAAATTTAAGGAGCAGTTATCGAACAAACTAGCGAAGCATCACGAGACATTTGGGAACGACCTCGATTCGGTTGTGGATGTTTGCTCGAAGCTGGCAGCTTCAGAG
ATGCTCTGCAATGATGGTCTCCAAGTCTTTGACCTCGTAACGGTGGCGTTTGCTGGTGTTCTGATTCGATGTCTTTCATGTTTGACTGCCTGCAATGTTTTTTCGGAGAG
ATTATTGGAAACAAGTTGGGTTACCTGCTTGTTCTTTTCAGTATCTTCTACTTCACCGCCGGCAGATCGCTTCTCCGACGCCGTCTCTGGCTTCTCCTCCAATTCCGGCA
GTGGCTTCTTAGATTTTGCATACTTTTTAGCCCGCAAAACCTTCATGACCTCTGGAAGTTCCAAACGAAACGTCAAAAGGGCTGAACTTATTATATTAAACAGAAGGAAG
TGTAAAAACCTTCAAAAAGCAAAAATGGAAAAGAGGCAGCATACCCTGAGTTGTAACAAGCCGATAGGCATGGCCAAGAGCAAGAGTATCATTTGGCCGGAGAAGCTTGA
CACGAGTAAAACGCACCGTCTTCGGCTCCCGATTGTCTTCCTCAGATTGAGGCAAGGGAATTATAAGAGAAACATAGTGACCCGGATTAGTCCTCATAACCTCACTGGCC
ACCACCGGCCAATACAGCCTCTCAATCCGGCCACTTGGGTGCTGTATAACAAGAGCCGCCGCATCAACCGCCTGGCAATTCCCCATCTGAATTGTGTGTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCTCTACGGTTGTGCTCTGGTCTCTCCCATTGCAGTTTCTCCCGCCAAGATCACAAGCTTCAACGGTTTTCACTACCCACCATTTTCCTCTTTCCCTCCTTTCGT
AAAGCCCTTCGTTAATTCTACCTTAACTTCGTCCTTCATTTACAGAGCCACTCCGATCCCCGCCAGCTATGTTTACCCTGAACCGATACCGGAATTTGCAGAAGTTGAAA
CCCAGAAATTTAAGGAGCAGTTATCGAACAAACTAGCGAAGCATCACGAGACATTTGGGAACGACCTCGATTCGGTTGTGGATGTTTGCTCGAAGCTGGCAGCTTCAGAG
ATGCTCTGCAATGATGGTCTCCAAGTCTTTGACCTCGTAACGGTGGCGTTTGCTGGTGTTCTGATTCGATGTCTTTCATGTTTGACTGCCTGCAATGTTTTTTCGGAGAG
ATTATTGGAAACAAGTTGGGTTACCTGCTTGTTCTTTTCAGTATCTTCTACTTCACCGCCGGCAGATCGCTTCTCCGACGCCGTCTCTGGCTTCTCCTCCAATTCCGGCA
GTGGCTTCTTAGATTTTGCATACTTTTTAGCCCGCAAAACCTTCATGACCTCTGGAAGTTCCAAACGAAACGTCAAAAGGGCTGAACTTATTATATTAAACAGAAGGAAG
TGTAAAAACCTTCAAAAAGCAAAAATGGAAAAGAGGCAGCATACCCTGAGTTGTAACAAGCCGATAGGCATGGCCAAGAGCAAGAGTATCATTTGGCCGGAGAAGCTTGA
CACGAGTAAAACGCACCGTCTTCGGCTCCCGATTGTCTTCCTCAGATTGAGGCAAGGGAATTATAAGAGAAACATAGTGACCCGGATTAGTCCTCATAACCTCACTGGCC
ACCACCGGCCAATACAGCCTCTCAATCCGGCCACTTGGGTGCTGTATAACAAGAGCCGCCGCATCAACCGCCTGGCAATTCCCCATCTGAATTGTGTGTGGTAG
Protein sequenceShow/hide protein sequence
MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKLAASE
MLCNDGLQVFDLVTVAFAGVLIRCLSCLTACNVFSERLLETSWVTCLFFSVSSTSPPADRFSDAVSGFSSNSGSGFLDFAYFLARKTFMTSGSSKRNVKRAELIILNRRK
CKNLQKAKMEKRQHTLSCNKPIGMAKSKSIIWPEKLDTSKTHRLRLPIVFLRLRQGNYKRNIVTRISPHNLTGHHRPIQPLNPATWVLYNKSRRINRLAIPHLNCVW