CuGenDBv2

Gene ID	Clc05G27760
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	DNA-directed RNA polymerase subunit 10-like protein
Genome location	ClcChr05:34942614..34943475
RNA-Seq Expression	Clc05G27760
Synteny	Clc05G27760
Gene Ontology terms	GO:0006360 - transcription by RNA polymerase I (biological process) GO:0006366 - transcription by RNA polymerase II (biological process) GO:0042797 - tRNA transcription by RNA polymerase III (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10 IPR020789 - RNA polymerases, subunit N, zinc binding site IPR023580 - RNA polymerase subunit RPB10

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004135479.1 DNA-directed RNA polymerase subunit 10-like protein [Cucumis sativus]

1.0e-33

98.59

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
        MIIPVRCFTCGKVIGNKWDTYL+LLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

XP_008446194.1 PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Cucumis melo]

6.7e-33

95.77

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
        MIIPVRCFTCGKVIGNKWDTYL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

XP_022151052.1 DNA-directed RNA polymerase subunit 10-like protein [Momordica charantia]

3.9e-33

95.77

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
        MIIPVRCFTCGKVIGNKWD+YLELLQADYPEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

XP_027347186.1 DNA-directed RNA polymerase subunit 10-like protein [Abrus precatorius]

3.7e-31

92.75

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MIIPVRCFTCGKVIGNKWDTYL+LLQADYPEG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNT+DKS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

XP_038893151.1 DNA-directed RNA polymerase subunit 10-like protein [Benincasa hispida]

4.6e-34

100

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
        MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

TrEMBL top hits

e value

%identity

Alignment

A0A067GUJ6 Uncharacterized protein

1.8e-31

92.75

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MIIPVRCFTCGKVIGNKWDTYL+LLQADYPEG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNT+DKS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

A0A0A0KQ80 Uncharacterized protein

5.0e-34

98.59

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
        MIIPVRCFTCGKVIGNKWDTYL+LLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

A0A1S3BEG8 DNA-directed RNA polymerase subunit 10-like protein

3.2e-33

95.77

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
        MIIPVRCFTCGKVIGNKWDTYL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

A0A5A7SYN0 DNA-directed RNA polymerase subunit 10-like protein

3.2e-33

95.77

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
        MIIPVRCFTCGKVIGNKWDTYL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

A0A6J1DCG7 DNA-directed RNA polymerase subunit 10-like protein

1.9e-33

95.77

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
        MIIPVRCFTCGKVIGNKWD+YLELLQADYPEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

SwissProt top hits

e value

%identity

Alignment

Q32P78 DNA-directed RNA polymerases I, II, and III subunit RPABC5

2.2e-26

76.12

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK
        MIIPVRCFTCGK++GNKW+ YL LLQA+Y EG+ALD LGL RYCCRRML+ HVDLIEKLLNY  ++K
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC5

8.5e-31

85.51

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MIIPVRCFTCGKVIGNKWD YL+LLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Q6QN04 DNA-directed RNA polymerases I, II, and III subunit RPABC5

2.2e-26

76.12

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK
        MIIPVRCFTCGK++GNKW+ YL LLQA+Y EG+ALD LGL RYCCRRML+ HVDLIEKLLNY  ++K
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 10

1.9e-30

85.51

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MIIPVRCFTCGKVIGNKWD YL+LLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein

3.1e-33

91.3

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MI+PVRCFTCGKVIGNKWDTYLELLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNTM+KS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G11475.1 RNA polymerases N / 8 kDa subunit

1.3e-31

85.51

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MIIPVRCFTCGKVIGNKWD YL+LLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

AT1G61700.1 RNA polymerases N / 8 kDa subunit

2.2e-34

91.3

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MI+PVRCFTCGKVIGNKWDTYLELLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNTM+KS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Sequences

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CDS sequence

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ATGATAATTCCGGTGCGGTGCTTCACTTGCGGCAAGGTGATCGGTAACAAATGGGACACTTATCTCGAGCTTCTTCAAGCAGACTATCCGGAAGGAGAGGCATTGGATAT
GTTAGGGTTAGTACGGTACTGTTGTCGGAGGATGCTTATGACTCATGTGGATCTCATTGAGAAGCTCTTGAACTACAATACCATGGATAAGTCTGAAATCATCTAG

mRNA sequence

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GAGACAGTGGCCCATTGTAAGCAAACAAAAGGGCCCAAATAGGCGGCCCATTTTCGGTAATGAAAGGGCGGAGTCGGAATTAGTTTCCGAATTGGAAGCCTCCAAAATTG
GCTTCAAATACGGTGGAAACGAAATTGCAGAGCAAAGAAGAAGATGATAATTCCGGTGCGGTGCTTCACTTGCGGCAAGGTGATCGGTAACAAATGGGACACTTATCTCG
AGCTTCTTCAAGCAGACTATCCGGAAGGAGAGGCATTGGATATGTTAGGGTTAGTACGGTACTGTTGTCGGAGGATGCTTATGACTCATGTGGATCTCATTGAGAAGCTC
TTGAACTACAATACCATGGATAAGTCTGAAATCATCTAGCTAATTATGGGGAATTGCCATTGCCAACACAAACAATTCTGCAATGCATCGATTGAATTTCCGCAACATTT
TGTAGTTTTCGCAGACCTGATGAGTTGTTTTGCCGAAGCAGAAACTAACGCTATGAATTTCTTTATTTTATTTTATTTCTTTATTTATTTTTACTAAATACTTTTCTTTG
GGATTTAAAAAGGGATATTTTTAAATATAGACAAAATATTTGTAAATAGCAAAATTTTACTGTTGGTTGTGAG

Protein sequence

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MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

Clc05G27760 (gene) of Watermelon (cordophanus) v2 genome