; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G29200 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G29200
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1
Genome locationClcChr05:36094787..36108399
RNA-Seq ExpressionClc05G29200
SyntenyClc05G29200
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034761.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa]1.0e-14988.09Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP N T DD ++R+R  +NLKRTQDFGFGKG+SLI G G
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAG

Query:  NNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQ
        NNGSDE VKGD GDGSMAVCRDCGN+AKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA+ASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  NNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  S-VTAAAASTSNATTPRSFETTSSHQ----------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
        S   AAAASTSNATTPRSFETTSSHQ                DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
Subjt:  S-VTAAAASTSNATTPRSFETTSSHQ----------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

Query:  NAFPSISHLHLERGNHHRE
        NAFPSISHLHL+ GNHHRE
Subjt:  NAFPSISHLHLERGNHHRE

KAG6601127.1 Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia]6.0e-14287.71Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGN
        MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   QPPPNQ  D+ S+RSR LENLKRTQDFGFGKGDSLI G GN
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGN

Query:  NGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQS
        +G D+QVKGDGGDGS+ VCRDCGN+AKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVA++    GSSGSSSAGAKRP+VLIPSQ+
Subjt:  NGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQS

Query:  VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNHHR
          AAAASTSNATTPRSFETTSSHQDASFKKSLPG VRAPAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHLE GNH R
Subjt:  VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNHHR

Query:  E
        +
Subjt:  E

XP_004142483.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus]5.8e-15392.74Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP N T DD ++R+R  +NLKRTQDFGFGKG+SLI+G G
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAG

Query:  NNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQ
        NNGSDE VKGD GDGSMAVCRDCGN+AKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA+ASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  NNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  S-VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNH
        S   AAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+ GNH
Subjt:  S-VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNH

Query:  HRE
        HRE
Subjt:  HRE

XP_008446964.1 PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo]7.6e-15392.74Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP N T DD ++R+R  +NLKRTQDFGFGKG+SLI G G
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAG

Query:  NNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQ
        NNGSDE VKGD GDGSMAVCRDCGN+AKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA+ASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  NNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  S-VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNH
        S   AAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+ GNH
Subjt:  S-VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNH

Query:  HRE
        HRE
Subjt:  HRE

XP_038892899.1 protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]1.5e-15393.05Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGN
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSS ALGVSVGIFPLL ATPCLPP QP PNQTADD ++RSR LENLKRTQDFGFGKGDSL+ GAGN
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGN

Query:  NGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQS
        N SDEQVKGD GDGSMAVCRDCGN+AKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA+ASGDGGSSGSSSAGAKRPRVLIPSQS
Subjt:  NGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQS

Query:  -VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNHH
           AAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAI+SGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+ GNHH
Subjt:  -VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNHH

Query:  RE
        R+
Subjt:  RE

TrEMBL top hitse value%identityAlignment
A0A0A0KWX6 Uncharacterized protein2.8e-15392.74Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP N T DD ++R+R  +NLKRTQDFGFGKG+SLI+G G
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAG

Query:  NNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQ
        NNGSDE VKGD GDGSMAVCRDCGN+AKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA+ASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  NNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  S-VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNH
        S   AAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+ GNH
Subjt:  S-VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNH

Query:  HRE
        HRE
Subjt:  HRE

A0A1S3BFS5 protein LATERAL ROOT PRIMORDIUM 13.7e-15392.74Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP N T DD ++R+R  +NLKRTQDFGFGKG+SLI G G
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAG

Query:  NNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQ
        NNGSDE VKGD GDGSMAVCRDCGN+AKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA+ASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  NNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  S-VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNH
        S   AAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+ GNH
Subjt:  S-VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNH

Query:  HRE
        HRE
Subjt:  HRE

A0A5D3CCT8 Protein LATERAL ROOT PRIMORDIUM 15.0e-15088.09Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP N T DD ++R+R  +NLKRTQDFGFGKG+SLI G G
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAG

Query:  NNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQ
        NNGSDE VKGD GDGSMAVCRDCGN+AKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA+ASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  NNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  S-VTAAAASTSNATTPRSFETTSSHQ----------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
        S   AAAASTSNATTPRSFETTSSHQ                DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
Subjt:  S-VTAAAASTSNATTPRSFETTSSHQ----------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

Query:  NAFPSISHLHLERGNHHRE
        NAFPSISHLHL+ GNHHRE
Subjt:  NAFPSISHLHLERGNHHRE

A0A6J1GXY1 protein LATERAL ROOT PRIMORDIUM 1-like2.7e-14087.09Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGN
        MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   QPPPNQ  D+ S+RSR LENLKRTQDFGFGKGDSLI G GN
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGN

Query:  NGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQ-
        +G D+QVKGDGGDGS+ VCRDCGN+AKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVA++    GSSGSSSAGAKRP+VLIPSQ 
Subjt:  NGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQ-

Query:  SVTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNHH
        +  AAAASTSNATTPRSFETTSSHQDASFKKSLPG V+APAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHLE GNH 
Subjt:  SVTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNHH

Query:  RE
        R+
Subjt:  RE

A0A6J1JNR9 protein LATERAL ROOT PRIMORDIUM 1-like isoform X26.1e-14087.38Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGN
        MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   QPPPNQ  D+ S+R R LENLKRTQDFGFGKGDSLI G GN
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGN

Query:  NGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQS
        +G D+QVKGDGGDGS+ VCRDCGN+AKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVA++    GSSGSSSAGAKRP+VLIPSQ 
Subjt:  NGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQS

Query:  VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNHHR
         TAAAASTSNATTPRSFETTSSHQDASFKKSLPG VRAPAVF+CHRVTAISSG GEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHLE GNH R
Subjt:  VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNHHR

Query:  E
        +
Subjt:  E

SwissProt top hitse value%identityAlignment
O65517 Protein SHI RELATED SEQUENCE 21.4e-3249.69Show/hide
Query:  CRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSFE
        CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M    S SG GG SGS  AG       IP +        TS+++   S  
Subjt:  CRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSFE

Query:  TTSSHQDASFKKSLPGHVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD
              +ASF    PG V + A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG +
Subjt:  TTSSHQDASFKKSLPGHVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 11.7e-5446.47Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADD-------GSERSRGLENLKRTQDFGFGKGDS
        M+GLRDV  +A  P+  HQ   +IS   H +    ++ ALG  VG+ PLL A          P Q  +D        + R +   N   TQ   F   + 
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADD-------GSERSRGLENLKRTQDFGFGKGDS

Query:  LISGAGNNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPR
           G  +N S     G G  G+ A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        A+   GSS S+S+G K+PR
Subjt:  LISGAGNNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPR

Query:  VLIPSQSVTAAA---ASTSNATTPRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS
        ++   Q     A    STSN T P+SFET+SS QD    +++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S
Subjt:  VLIPSQSVTAAA---ASTSNATTPRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS

Query:  HLHL--ERGNHH
         LHL     NH+
Subjt:  HLHL--ERGNHH

Q9M2U4 Protein SHI RELATED SEQUENCE 62.0e-3145.66Show/hide
Query:  VCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSF
        VCRDCGN+AKKEC + RCRTCCK RG +C THVKSTW+P++  R                      SSS   ++ ++ I  QS      S + +  P   
Subjt:  VCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSF

Query:  ETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS
         TT+S Q+  F++ LPG + APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   AFP +S
Subjt:  ETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS

Q9SD40 Protein SHI RELATED SEQUENCE 12.1e-2841.58Show/hide
Query:  GDSLISGAGNNGSDEQVK--GDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAG
        G++  +GAG   +   ++  G GG      C+DCGN+AKK+C + RCRTCCK RG  CSTHV+STWVPAA+RRERQ  +      +    G S       
Subjt:  GDSLISGAGNNGSDEQVK--GDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAG

Query:  AKRPRVLIPSQSVTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG
         KR R  +P         +TS++       + S  +  +F    P  V + AVFRC RV+++  GE E AYQ  V+IGGH+FKG LYD G
Subjt:  AKRPRVLIPSQSVTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG

Q9XGX0 Protein SHORT INTERNODES1.8e-2742.08Show/hide
Query:  TQDFGFGKGDSLISGAGNNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSS
        T   G G G S  S    +G    +   G       C+DCGN++KK+C + RCRTCCK RG  C THVKSTWVPAA+RRERQ  +       ++G     
Subjt:  TQDFGFGKGDSLISGAGNNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSS

Query:  GSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
           S   KR R  IP       A STS A T      TS  +  +F    P  V + AVFRC RV+++   E E AY+  V+IGGHVFKG LYDQG  ++
Subjt:  GSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

Query:  NA
        ++
Subjt:  NA

Arabidopsis top hitse value%identityAlignment
AT3G54430.1 SHI-related sequence 61.4e-3245.66Show/hide
Query:  VCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSF
        VCRDCGN+AKKEC + RCRTCCK RG +C THVKSTW+P++  R                      SSS   ++ ++ I  QS      S + +  P   
Subjt:  VCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSF

Query:  ETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS
         TT+S Q+  F++ LPG + APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   AFP +S
Subjt:  ETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS

AT4G36260.1 Lateral root primordium (LRP) protein-related9.9e-3449.69Show/hide
Query:  CRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSFE
        CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M    S SG GG SGS  AG       IP +        TS+++   S  
Subjt:  CRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSFE

Query:  TTSSHQDASFKKSLPGHVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD
              +ASF    PG V + A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG +
Subjt:  TTSSHQDASFKKSLPGHVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD

AT5G12330.1 Lateral root primordium (LRP) protein-related1.2e-5546.47Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADD-------GSERSRGLENLKRTQDFGFGKGDS
        M+GLRDV  +A  P+  HQ   +IS   H +    ++ ALG  VG+ PLL A          P Q  +D        + R +   N   TQ   F   + 
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADD-------GSERSRGLENLKRTQDFGFGKGDS

Query:  LISGAGNNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPR
           G  +N S     G G  G+ A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        A+   GSS S+S+G K+PR
Subjt:  LISGAGNNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPR

Query:  VLIPSQSVTAAA---ASTSNATTPRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS
        ++   Q     A    STSN T P+SFET+SS QD    +++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S
Subjt:  VLIPSQSVTAAA---ASTSNATTPRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS

Query:  HLHL--ERGNHH
         LHL     NH+
Subjt:  HLHL--ERGNHH

AT5G12330.2 Lateral root primordium (LRP) protein-related1.2e-5546.47Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADD-------GSERSRGLENLKRTQDFGFGKGDS
        M+GLRDV  +A  P+  HQ   +IS   H +    ++ ALG  VG+ PLL A          P Q  +D        + R +   N   TQ   F   + 
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADD-------GSERSRGLENLKRTQDFGFGKGDS

Query:  LISGAGNNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPR
           G  +N S     G G  G+ A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        A+   GSS S+S+G K+PR
Subjt:  LISGAGNNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPR

Query:  VLIPSQSVTAAA---ASTSNATTPRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS
        ++   Q     A    STSN T P+SFET+SS QD    +++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S
Subjt:  VLIPSQSVTAAA---ASTSNATTPRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS

Query:  HLHL--ERGNHH
         LHL     NH+
Subjt:  HLHL--ERGNHH

AT5G12330.4 Lateral root primordium (LRP) protein-related1.2e-5546.47Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADD-------GSERSRGLENLKRTQDFGFGKGDS
        M+GLRDV  +A  P+  HQ   +IS   H +    ++ ALG  VG+ PLL A          P Q  +D        + R +   N   TQ   F   + 
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADD-------GSERSRGLENLKRTQDFGFGKGDS

Query:  LISGAGNNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPR
           G  +N S     G G  G+ A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        A+   GSS S+S+G K+PR
Subjt:  LISGAGNNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPR

Query:  VLIPSQSVTAAA---ASTSNATTPRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS
        ++   Q     A    STSN T P+SFET+SS QD    +++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S
Subjt:  VLIPSQSVTAAA---ASTSNATTPRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS

Query:  HLHL--ERGNHH
         LHL     NH+
Subjt:  HLHL--ERGNHH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGGCAGCTATTGGAACAAACTCAATCCAAGAGAACAGAACACAACAATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCGACCCCTTCTTCTCTTCACCAACA
GACCCAAATCATATCTTCCGATCATCATCCATCTCTTCCTCTGCCGTCCTCCACCGCTCTCGGCGTTAGCGTCGGCATTTTTCCCCTTCTCGCTGCAACCCCATGTCTCC
CTCCGTCGCAGCCCCCGCCCAATCAGACGGCTGACGATGGTAGCGAGCGTAGTCGGGGTTTGGAGAATCTGAAGAGAACCCAGGATTTTGGGTTTGGGAAAGGGGATTCG
CTGATCAGCGGAGCCGGAAATAATGGCTCCGACGAACAAGTGAAAGGCGACGGCGGGGATGGGTCTATGGCAGTGTGTAGGGACTGTGGAAACAAAGCAAAAAAGGAGTG
TGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTGCTCTACACACGTGAAGAGCACGTGGGTGCCGGCGGCTCGCCGCCGTGAGCGGCAGATGTTGG
TGGTGATGGACGGCGTCGCCTCAGCTAGTGGCGATGGAGGGTCTTCTGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGTCACCGCC
GCCGCCGCTTCCACTTCCAATGCCACCACTCCCCGGAGCTTTGAAACAACCTCTAGCCATCAAGATGCAAGCTTCAAGAAGTCGTTACCGGGGCATGTTCGGGCTCCAGC
CGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGTGGTCATGTCTTTAAAGGCTTTCTCTATGATC
AAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACACCTCCATTTGGAAAGAGGTAACCACCACAGGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGGCAGCTATTGGAACAAACTCAATCCAAGAGAACAGAACACAACAATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCGACCCCTTCTTCTCTTCACCAACA
GACCCAAATCATATCTTCCGATCATCATCCATCTCTTCCTCTGCCGTCCTCCACCGCTCTCGGCGTTAGCGTCGGCATTTTTCCCCTTCTCGCTGCAACCCCATGTCTCC
CTCCGTCGCAGCCCCCGCCCAATCAGACGGCTGACGATGGTAGCGAGCGTAGTCGGGGTTTGGAGAATCTGAAGAGAACCCAGGATTTTGGGTTTGGGAAAGGGGATTCG
CTGATCAGCGGAGCCGGAAATAATGGCTCCGACGAACAAGTGAAAGGCGACGGCGGGGATGGGTCTATGGCAGTGTGTAGGGACTGTGGAAACAAAGCAAAAAAGGAGTG
TGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTGCTCTACACACGTGAAGAGCACGTGGGTGCCGGCGGCTCGCCGCCGTGAGCGGCAGATGTTGG
TGGTGATGGACGGCGTCGCCTCAGCTAGTGGCGATGGAGGGTCTTCTGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGTCACCGCC
GCCGCCGCTTCCACTTCCAATGCCACCACTCCCCGGAGCTTTGAAACAACCTCTAGCCATCAAGATGCAAGCTTCAAGAAGTCGTTACCGGGGCATGTTCGGGCTCCAGC
CGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGTGGTCATGTCTTTAAAGGCTTTCTCTATGATC
AAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACACCTCCATTTGGAAAGAGGTAACCACCACAGGGAATAGGCATTCCTTCTCTTCTTTCTTCTCCAAATCTCC
CTTTGTCACTCTCCCCCTCCTGAAAACTTGGTCTCGGCCGCTTGAAAAAAACATGGTCTCTCTGATAGATTTCAGTCGTCTGTTATGTTATCTATAAGTTCTATATAGTT
GTTATCATGGTGGTAATGCAATGAATGTTGCACTAAACAGGACAAAGAAGTGCATAGTTGTAATAGGATTTTTCTGTTCTACAGTTCTTCTAGTCTTAAGCTAAGTTTAG
TGTAAGATGTCAAGTTCAATGATAGTTGGATACTGATCTTCTGTACATTGCTAAGAAGATGTGCAACTTTCATCCATCCAAATGTCTGCTGAAGCAAGCTAGCTTTTCAT
ATCTCATAGCAGCTGTATTATATGTTGGGATACAAGAGTTTAATCTCTTCTTTGACTGTCTATCTCGAAAAGTTTTACAAAACGAATGAAACCATTCATCTTCAAAAATA
GAACATCAAGCATCTTCTTGCGAAATGCCACCGTGGTGGAACAGGCAAAGCGGTTGTAATACTTCCTCTTTCCACATTACTATCTTTTGTCTTCATCTTTGAACATTTTC
ACTTATTTGGATCTTCTCCAATTATGAGAGGGCATCATTAAATGGAAGTCATTTATTTGATTGAGACAACTTCGATGGTGAATACTTAGTGAGAATTGGAATAAGTAAAG
TCAGACCCCACACGAACGATATAAGTAGAAGATGAAAG
Protein sequenceShow/hide protein sequence
MCGSYWNKLNPREQNTTMLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADDGSERSRGLENLKRTQDFGFGKGDS
LISGAGNNGSDEQVKGDGGDGSMAVCRDCGNKAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQSVTA
AAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNHHRE