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Clc05G29300 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G29300
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Genome locationClcChr05:36205884..36207279
RNA-Seq ExpressionClc05G29300
SyntenyClc05G29300
Gene Ontology termsGO:0006979 - response to oxidative stress (biological process)
GO:0005747 - mitochondrial respiratory chain complex I (cellular component)
InterPro domainsIPR016488 - NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601118.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6, partial [Cucurbita argyrosperma subsp. sororia]3.7e-2589.39Show/hide
Query:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF
        V + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQG+SNFLKNFYKSNYF
Subjt:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF

XP_022957489.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita moschata]3.7e-2589.39Show/hide
Query:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF
        V + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQG+SNFLKNFYKSNYF
Subjt:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF

XP_022985413.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita maxima]3.7e-2589.39Show/hide
Query:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF
        V + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQG+SNFLKNFYKSNYF
Subjt:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF

XP_023552714.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo subsp. pepo]3.7e-2589.39Show/hide
Query:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF
        V + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQG+SNFLKNFYKSNYF
Subjt:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF

XP_038892169.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Benincasa hispida]7.4e-2692.42Show/hide
Query:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF
        V + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQG+SNFLKNFYKSNYF
Subjt:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF

TrEMBL top hitse value%identityAlignment
A0A1S3BH79 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 64.0e-2589.39Show/hide
Query:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF
        V + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD GAKDQG+SNFLKNFY+SNYF
Subjt:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF

A0A5A7SUY5 NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 66.8e-2554.81Show/hide
Query:  DGLIKMLVSCWR-----ILIFLRFLRSYPLFPNSTISMLSFCYLPNVNLSKKLNDLCQRTEKLLLIPLEVENLQVIDMLLFKGMEELGNITEHAKQRHHI
        DG+   L  C R         L FL   P+  + +  +LSF +L    L + L+           +   V  ++VIDMLLFKGMEELGNITEHAKQRHHI
Subjt:  DGLIKMLVSCWR-----ILIFLRFLRSYPLFPNSTISMLSFCYLPNVNLSKKLNDLCQRTEKLLLIPLEVENLQVIDMLLFKGMEELGNITEHAKQRHHI

Query:  IGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF
        IGQYVVGREGLVQD GAKDQG+SNFLKNFY+SNYF
Subjt:  IGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF

A0A6J1CBT6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 65.2e-2587.88Show/hide
Query:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF
        + + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVG EGLVQDLG KDQG+SNFLKNFYKSNYF
Subjt:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF

A0A6J1H232 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 61.8e-2589.39Show/hide
Query:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF
        V + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQG+SNFLKNFYKSNYF
Subjt:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF

A0A6J1JDJ2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 61.8e-2589.39Show/hide
Query:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF
        V + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQG+SNFLKNFYKSNYF
Subjt:  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF

SwissProt top hitse value%identityAlignment
Q9LHI0 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 61.1e-1975.81Show/hide
Query:  QVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF
        +VID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G KDQG ++FLKNFY SNYF
Subjt:  QVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF

Arabidopsis top hitse value%identityAlignment
AT3G12260.1 LYR family of Fe/S cluster biogenesis protein7.7e-2175.81Show/hide
Query:  QVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF
        +VID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G KDQG ++FLKNFY SNYF
Subjt:  QVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCAGGAAGTTGACCTCCAAAATCTCTCATCAGTACTGGTTTTCATTAATTCTGATGGGTTAATTAAAATGTTGGTTTCTTGTTGGAGGATCTTGATTTTCTTGAG
GTTCTTGAGGTCTTACCCGCTGTTTCCTAACAGCACTATTTCTATGCTGAGTTTCTGCTACTTGCCGAATGTTAACTTGAGTAAGAAGTTGAATGATTTGTGTCAAAGGA
CTGAAAAACTTTTGCTAATACCACTTGAGGTAGAAAATTTACAGGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAACATGCAAAGCAA
CGGCATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTGGGCGCCAAGGATCAGGGCGTATCCAATTTTCTCAAGAACTTCTACAAGAGTAA
CTACTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACCAGGAAGTTGACCTCCAAAATCTCTCATCAGTACTGGTTTTCATTAATTCTGATGGGTTAATTAAAATGTTGGTTTCTTGTTGGAGGATCTTGATTTTCTTGAG
GTTCTTGAGGTCTTACCCGCTGTTTCCTAACAGCACTATTTCTATGCTGAGTTTCTGCTACTTGCCGAATGTTAACTTGAGTAAGAAGTTGAATGATTTGTGTCAAAGGA
CTGAAAAACTTTTGCTAATACCACTTGAGGTAGAAAATTTACAGGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAACATGCAAAGCAA
CGGCATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTGGGCGCCAAGGATCAGGGCGTATCCAATTTTCTCAAGAACTTCTACAAGAGTAA
CTACTTTTGA
Protein sequenceShow/hide protein sequence
MNQEVDLQNLSSVLVFINSDGLIKMLVSCWRILIFLRFLRSYPLFPNSTISMLSFCYLPNVNLSKKLNDLCQRTEKLLLIPLEVENLQVIDMLLFKGMEELGNITEHAKQ
RHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF