CuGenDBv2

Gene ID	Clc05G29310
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Genome location	ClcChr05:36223428..36224089
RNA-Seq Expression	Clc05G29310
Synteny	Clc05G29310
Gene Ontology terms	GO:0000413 - protein peptidyl-prolyl isomerization (biological process) GO:0006457 - protein folding (biological process) GO:0006979 - response to oxidative stress (biological process) GO:0005747 - mitochondrial respiratory chain complex I (cellular component) GO:0003755 - peptidyl-prolyl cis-trans isomerase activity (molecular function)
InterPro domains	IPR016488 - NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034771.1 peptidyl-prolyl cis-trans isomerase CYP22 isoform X1 [Cucumis melo var. makuwa]

2.9e-30

87.8

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLLNLDKFS
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASEIRKNSHVTDPK    L    F+
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLLNLDKFS

KAE8648872.1 hypothetical protein Csa_008170 [Cucumis sativus]

3.8e-30

93.42

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL
        MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIMDIYNLDDVATVSQLRS IASEIRKNSHVTDPK  D+L
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL

XP_008446979.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucumis melo]

7.7e-31

94.74

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASEIRKNSHVTDPK  D+L
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL

XP_023552714.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo subsp. pepo]

1.7e-30

92.11

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV T+SQ+RSTIASEIRKNSHVTDPK  D+L
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL

XP_038892169.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Benincasa hispida]

7.7e-31

94.74

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASEIRKNSHVTDPK  D+L
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KRV0 Uncharacterized protein

1.9e-30

93.42

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL
        MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIMDIYNLDDVATVSQLRS IASEIRKNSHVTDPK  D+L
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL

A0A1S3BH79 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

3.7e-31

94.74

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASEIRKNSHVTDPK  D+L
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL

A0A5A7SZJ9 Peptidyl-prolyl cis-trans isomerase CYP22 isoform X1

1.4e-30

87.8

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLLNLDKFS
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASEIRKNSHVTDPK    L    F+
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLLNLDKFS

A0A6J1H232 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

7.1e-30

90.79

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDV T SQ+RSTIASEIRKNSHVTDPK  D+L
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL

A0A6J1JDJ2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

1.2e-29

89.47

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDV T+S +RSTIASEIRKNSHVTDPK  D+L
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL

SwissProt top hits

e value

%identity

Alignment

Q02366 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

4.9e-04

34.85

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Query:  PPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL
        P  S  + EA+ RV + +R+  R +P  + ++ LD   +V Q R  +    +KN+H+TDP+  DLL
Subjt:  PPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL

Q9CQZ5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

4.9e-04

39.39

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Query:  PPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL
        P  S  L EA+ RV + +R+  R +P  + +  LD   TV Q R  +     KN+HVTDP+  DLL
Subjt:  PPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL

Q9LHI0 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

6.8e-22

66.22

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Query:  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL
        F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IMDIYNL DV   SQLR  I+++IR N+H+TDPK  DLL
Subjt:  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL

Arabidopsis top hits

e value

%identity

Alignment

AT3G12260.1 LYR family of Fe/S cluster biogenesis protein

4.8e-23

66.22

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Query:  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL
        F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IMDIYNL DV   SQLR  I+++IR N+H+TDPK  DLL
Subjt:  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLL

Sequences

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CDS sequence

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ATGGCATTCACGGTTCGAGGTCTGAAGGTTCCGCCGAATTCCGCGAGCCTTGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCATTGCCAGC
AATCATGGACATTTACAACTTAGATGATGTCGCTACTGTTTCTCAGCTCCGTTCTACGATCGCCTCCGAGATCCGCAAGAATTCCCACGTCACCGACCCTAAGCCCGACG
ACTTATTGAACTTGGATAAGTTCTCTCCTAAAGAGCGGGCATATTAG

mRNA sequence

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Protein sequence

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MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLLNLDKFSPKERAY

Clc05G29310 (gene) of Watermelon (cordophanus) v2 genome