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Clc06G00190 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G00190
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUbiquitin related modifier 1
Genome locationClcChr06:178044..182989
RNA-Seq ExpressionClc06G00190
SyntenyClc06G00190
Gene Ontology termsGO:0002098 - tRNA wobble uridine modification (biological process)
GO:0032447 - protein urmylation (biological process)
GO:0034227 - tRNA thio-modification (biological process)
GO:0005829 - cytosol (cellular component)
InterPro domainsIPR012675 - Beta-grasp domain superfamily
IPR015221 - Ubiquitin-related modifier 1
IPR016155 - Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040023.1 ubiquitin-related modifier 1-like protein 2 [Cucumis melo var. makuwa]9.9e-4396.7Show/hide
Query:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELLC+SVKIHNVSID ENGVGKLIMKDLLSWVR NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

XP_008460154.1 PREDICTED: ubiquitin-related modifier 1 homolog 2 [Cucumis melo]9.9e-4396.7Show/hide
Query:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELLC+SVKIHNVSID ENGVGKLIMKDLLSWVR NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

XP_022999845.1 ubiquitin-related modifier 1 homolog 2 [Cucurbita maxima]9.9e-4395.6Show/hide
Query:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELLCDSVKIHNVSI+ ENGVGKL+MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

XP_038876423.1 ubiquitin-related modifier 1 homolog 2 isoform X1 [Benincasa hispida]6.8e-4498.9Show/hide
Query:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELLCDSVKIHNVSID ENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

XP_038876424.1 ubiquitin-related modifier 1 homolog 2 isoform X2 [Benincasa hispida]6.8e-4498.9Show/hide
Query:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELLCDSVKIHNVSID ENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

TrEMBL top hitse value%identityAlignment
A0A0A0KCT7 Ubiquitin-related modifier 1 homolog1.1e-4295.6Show/hide
Query:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELLC+SVKIHNVSID ENGVGK IMKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

A0A1S3CCC7 Ubiquitin-related modifier 1 homolog4.8e-4396.7Show/hide
Query:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELLC+SVKIHNVSID ENGVGKLIMKDLLSWVR NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

A0A5D3DLM7 Ubiquitin-related modifier 1 homolog4.8e-4396.7Show/hide
Query:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELLC+SVKIHNVSID ENGVGKLIMKDLLSWVR NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

A0A6J1CWE9 Ubiquitin-related modifier 1 homolog1.8e-4295.6Show/hide
Query:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELLC+SVKIHNVSID ENG GKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Subjt:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

A0A6J1KGQ8 Ubiquitin-related modifier 1 homolog4.8e-4395.6Show/hide
Query:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELLCDSVKIHNVSI+ ENGVGKL+MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

SwissProt top hitse value%identityAlignment
A0MDQ1 Ubiquitin-related modifier 1 homolog 11.2e-3882.8Show/hide
Query:  GGLELLCDSVKIHNVSIDLENGVGK--LIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELLCDS KIH V++DL NG       MK LLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Subjt:  GGLELLCDSVKIHNVSIDLENGVGK--LIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

B3H7G2 Ubiquitin-related modifier 1 homolog 29.6e-4187.91Show/hide
Query:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELLCDSVKIH V+I+L N    L MKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Subjt:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

B6SXH2 Ubiquitin-related modifier 1 homolog6.9e-3170.97Show/hide
Query:  GGLELLCD-SVKIHNVSIDL-ENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELL + S K+H V +   ++G GK+ MK LLSWV+ NLIKERPEMF+K D+VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Subjt:  GGLELLCD-SVKIHNVSIDL-ENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

Q0D6M1 Ubiquitin-related modifier 1 homolog4.3e-3371.74Show/hide
Query:  GGLELLCD-SVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELL + S K+H V +   +G GK++MK LL+WV++NLIKERPEMF+KGD+VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Subjt:  GGLELLCD-SVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

Q7GBC8 Ubiquitin-related modifier 1 homolog4.3e-3371.74Show/hide
Query:  GGLELLCD-SVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELL + S K+H V +   +G GK++MK LL+WV++NLIKERPEMF+KGD+VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Subjt:  GGLELLCD-SVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

Arabidopsis top hitse value%identityAlignment
AT2G45695.1 Ubiquitin related modifier 18.4e-4082.8Show/hide
Query:  GGLELLCDSVKIHNVSIDLENGVGK--LIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELLCDS KIH V++DL NG       MK LLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Subjt:  GGLELLCDSVKIHNVSIDLENGVGK--LIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

AT3G61113.1 Ubiquitin related modifier 16.8e-4287.91Show/hide
Query:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELLCDSVKIH V+I+L N    L MKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Subjt:  GGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACTGACACTTGAATTTGGGGCAAACATTTGTGATCCTGGAACACAGATTTTCAATGGCTTTTGTTTCCGGGGAGGTTGGAAATCAGAAGAAATATTGCATTCTAT
CGTTGGGGGATTGGAGTTACTATGTGACTCTGTGAAGATCCATAATGTCAGCATTGATCTTGAAAATGGAGTGGGAAAGTTAATTATGAAAGATTTGCTCTCTTGGGTCC
GTACTAATCTGATCAAGGAGCGGCCAGAAATGTTTATGAAAGGCGACACTGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTTAGTGGGCAGCTT
GACACAACATTGGAAGAGAAAGACGTGGTAGTGTTCATATCTACCTTGCATGGAGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGATAGCCTCTGTTATCCCTAACCCACTTCTTGTAAGCTTCCATGAGTTGGAAAAATCAGAACGCAGCAGCAAGAAAAGCAAGAAACAGTTGAATCGTCCAAGCAC
CTGATCTGAACTTTGTCTTCTCTCTAAGGTTTTAGGGTTCCGCGGAAGGAAATTGAAAATGCAACTGACACTTGAATTTGGGGCAAACATTTGTGATCCTGGAACACAGA
TTTTCAATGGCTTTTGTTTCCGGGGAGGTTGGAAATCAGAAGAAATATTGCATTCTATCGTTGGGGGATTGGAGTTACTATGTGACTCTGTGAAGATCCATAATGTCAGC
ATTGATCTTGAAAATGGAGTGGGAAAGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGTACTAATCTGATCAAGGAGCGGCCAGAAATGTTTATGAAAGGCGACACTGT
AAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTTAGTGGGCAGCTTGACACAACATTGGAAGAGAAAGACGTGGTAGTGTTCATATCTACCTTGCATG
GAGGCTAGCTTGATCAAAAATATCTTTTAAAGCTTGTATCTACTAAATAGTTGTCTGAGATAATATGGTACTTGGGCATTTTAACTATAAAAATATGTATTTTTCCTGAC
ATTTGTCCCACCATATGATATGGTCATTGTTACCTTAAAATATATGCATTGTAATCTTGGTCAGATTTTGCTCTGAGGCATGTGAAATCATCTCTTTAGGGGTGGATATT
CATGTTGAATAACTGATTAAATTAGAAGGAAGACTATATTATAGGATA
Protein sequenceShow/hide protein sequence
MQLTLEFGANICDPGTQIFNGFCFRGGWKSEEILHSIVGGLELLCDSVKIHNVSIDLENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQL
DTTLEEKDVVVFISTLHGG