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Clc06G00630 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G00630
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionupstream activation factor subunit spp27-like
Genome locationClcChr06:549129..551172
RNA-Seq ExpressionClc06G00630
SyntenyClc06G00630
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593744.1 hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sororia]7.0e-5480.14Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK
        MASGL+NGTR FRGCRTLLDSLKS TQAYSS  AV+ KG++K   AA S +KS AG KKE  R  GILK+VQVSP LAGFLGMSE+SRAEAVKQIW+YIK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK

Query:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS
        LNNLQ+PA+KRQINCDEKLK+IFDGRE VGFLEIGKLLSPHFVKSS
Subjt:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS

KAG6593745.1 hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia]7.7e-5379.45Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK
        MASGL+NGTR FRGCRTLLDSLKS TQAYSS  AV+ KG+LK   AA S +KS AG KKE  R  GILK+VQVSP LAGFLGMSE+SR EAVKQIW+YIK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK

Query:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS
        LNNLQ+PA+KRQINCDEKLK+IFDGRE VG LEIGKLLSPHFVKSS
Subjt:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS

XP_023000110.1 upstream activation factor subunit spp27-like [Cucurbita maxima]5.0e-5278.08Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK
        MASGL+NGTR FRGCRTLLDSLKS TQAYSS  AV+ KG+LK   AA S +KS AG KKE  R  GI K+VQVSP LAGFLGMSE+SR+EAVKQIW+YIK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK

Query:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS
        LN+LQ+PA+KRQINCDEKLK+IFDGRE VG LEIGKLLSPHFVKSS
Subjt:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS

XP_023514456.1 upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo]3.5e-5377.78Show/hide
Query:  RCLRRSKMASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVK
        R L RSKMASGL+NGTR FRGCRTLLDSLKS TQAYSS  AV+ KGKLK   AA S + S AG KKE  R  GI K+VQVSP LAGFLGMSE+SR EAVK
Subjt:  RCLRRSKMASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVK

Query:  QIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS
        QIW+YIKLNNLQ+PA+KRQINCDEKLK+IFDGRE VG LEIGKLLS HFVKSS
Subjt:  QIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS

XP_038906873.1 upstream activation factor subunit spp27-like [Benincasa hispida]1.0e-5785.62Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLKA---AVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK
        MASG  NGTRFFRGCRTL DSLKS TQAYSSTPAV+ KGKLKA   AVSGQKSVAGPKK   R TGI K+  VSP LAGFLGMSETSR+EAVKQIWAYIK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLKA---AVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK

Query:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS
        LNNLQSPADKRQINCDEKLK+IFDGREKVGFLEIGKLL+PHFVKSS
Subjt:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS

TrEMBL top hitse value%identityAlignment
A0A0A0KCY9 SWIB domain-containing protein4.0e-4773.79Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK
        MASGLSNGTRFF+GCRTLLDSLKS TQAYSSTP V+ K  LK   AAVSGQKS   PKK      G+LK  +VSPTLAGFLG SE +R EAVKQIW YIK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK

Query:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKS
        LNNLQ+P DKRQI CD KLK+IF GREKVG LEI K LS HFVKS
Subjt:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKS

A0A1S3CBA0 protein TRI1-like6.0e-5175.17Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK
        MASGLSNGTRFFRGC+TLLDSLK  TQAYSSTPAV+ K KLK   AAVSGQKS A PK++     GI+K+++VSPTLAGFLG SE SRA+A+KQIW+YIK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK

Query:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKS
        LNNLQ+  DKRQINCD KLK+IF GREKVG LEI K LSPHFVKS
Subjt:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKS

A0A5D3DMJ2 Protein TRI1-like6.0e-5175.17Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK
        MASGLSNGTRFFRGC+TLLDSLK  TQAYSSTPAV+ K KLK   AAVSGQKS A PK++     GI+K+++VSPTLAGFLG SE SRA+A+KQIW+YIK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK

Query:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKS
        LNNLQ+  DKRQINCD KLK+IF GREKVG LEI K LSPHFVKS
Subjt:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKS

A0A6J1KEZ2 upstream activation factor subunit spp27-like5.4e-5277.4Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK
        MASGL+NGTR FRGCRTLLDSLKS TQAYSS  AV+ KG+LK   AA + +KS AG KKE  R  GI K+VQVSP LAGFLGMSE+SR+EAVKQIW+YIK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK

Query:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS
        LN+LQ+PA+KRQINCDEKLK+IFDGRE VG LEIGKLLSPHFVKSS
Subjt:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS

A0A6J1KHF5 upstream activation factor subunit spp27-like2.4e-5278.08Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK
        MASGL+NGTR FRGCRTLLDSLKS TQAYSS  AV+ KG+LK   AA S +KS AG KKE  R  GI K+VQVSP LAGFLGMSE+SR+EAVKQIW+YIK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIK

Query:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS
        LN+LQ+PA+KRQINCDEKLK+IFDGRE VG LEIGKLLSPHFVKSS
Subjt:  LNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp276.4e-1036.36Show/hide
Query:  KSATQAYSSTPAVARKGKLKAAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFD
        K AT+  +       K   K    G++     + +      + K +++SP LA FLG+ + SR + VK++W YIK ++LQ P DKR I CD+KLKS+F+
Subjt:  KSATQAYSSTPAVARKGKLKAAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFD

Q05024 Protein TRI11.9e-0940.38Show/hide
Query:  RKGKLKAAVSGQKSVAGPKK--EPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKL
        RKGK     S  KS    KK   P   +  ++ V +S  L  FLG  E  R + VK IW YIK ++LQ+P D+R+I CDEK++ IF   +K+    + KL
Subjt:  RKGKLKAAVSGQKSVAGPKK--EPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKL

Query:  LSPH
        L+ H
Subjt:  LSPH

Q08747 Upstream activation factor subunit UAF301.2e-0832.58Show/hide
Query:  RTLLDSLK-SATQAYSSTPAVARKGKLKAAVSGQKSVAGPKKEPTRPTG-----ILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQ
        R+L D LK +AT A   T  +    +            G   E  + T        + V +S +LA  LG  E +R E V+++WAYIK +NLQ+P +K++
Subjt:  RTLLDSLK-SATQAYSSTPAVARKGKLKAAVSGQKSVAGPKKEPTRPTG-----ILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQ

Query:  INCDEKLKSIFDGREKVGFLEIGKLLSPHFVK
        I CDEKL+ I    +     E+ K+L+ H  +
Subjt:  INCDEKLKSIFDGREKVGFLEIGKLLSPHFVK

Q9P7S3 SWI/SNF and RSC complexes subunit ssr31.6e-0532.35Show/hide
Query:  VARKGKLKAAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKL
        V RKG     V   K +  P++ P R        ++S   A  LG+ E +R + V  +W YIK + LQ   +KR INCD+ L+ +F+  +++ F  I +L
Subjt:  VARKGKLKAAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKL

Query:  LS
        ++
Subjt:  LS

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein2.6e-2253.47Show/hide
Query:  KAAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVK
        KAA     +VAG  K      GI K   VS  LA F G  E +R  A+K++W Y+KL+NLQ+PA+K++I+CD+KLK+IFDG++KVG  EI KLLSPHF K
Subjt:  KAAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVK

Query:  S
        S
Subjt:  S

AT2G14880.1 SWIB/MDM2 domain superfamily protein1.7e-2143.94Show/hide
Query:  TRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLKAAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKR
        T  FR   T L SL+     ++S PA A+   ++A  S  +S          P GI+K   VSP +   + + E +R +A+K+IWAYIK ++LQ P +KR
Subjt:  TRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLKAAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKR

Query:  QINCDEKLKSIFDGREKVGFLEIGKLLSPHFV
        +I CDEKLK IF+GR++VGFLEI KL+ PHF+
Subjt:  QINCDEKLKSIFDGREKVGFLEIGKLLSPHFV

AT2G35605.1 SWIB/MDM2 domain superfamily protein7.3e-2565.85Show/hide
Query:  TGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS
        TGILK V VS  LA F+G +E SR  AVK+IW YIKLNNLQ+P +KR+I CDE+LK+IF G++ VGFLEI KLLS HF KS+
Subjt:  TGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS

AT3G03590.1 SWIB/MDM2 domain superfamily protein6.8e-3154.07Show/hide
Query:  FRGCRTLLDSLKSATQAY---SSTPAVARKGKLKAAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKR
        FRG R+LL     AT +     ST   A K K KA    +     P K+  R TGI K   VSP LA FLG  ETSR +A+K IW YIK ++LQ+PADKR
Subjt:  FRGCRTLLDSLKSATQAY---SSTPAVARKGKLKAAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKR

Query:  QINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS
        +I CDE LK IF+G++KVGFLEI KLLSPHFVK++
Subjt:  QINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS

AT4G34290.1 SWIB/MDM2 domain superfamily protein1.9e-2049.48Show/hide
Query:  SVAGPKKEPT------RPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFV
        S A    +PT       P GI+K   VS  +   +G+ E  R +A+K+IWAYIK ++LQ P +KR I CDEKLK IF+G+E+VGFLEI KL+ PHF+
Subjt:  SVAGPKKEPT------RPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACAAATCAATTTATTGAAGTTAGATTTTCCCAAAGTTGGGCCAGAGGCCCACAGTCCATCACTGTGGACCCAAACCAAGGGCAGCCCAATTCCTTCAGCTCATTC
TCCGCTTAAAAACTCCCGTTTCCATTTCTTCCAACCTCAGTCGAGCAAAAGCGGCAAAAACCCCTGCACTCACCGTTGTCTTCGTCGGAGCAAAATGGCCTCAGGTCTTA
GCAATGGCACCAGGTTCTTCAGAGGCTGCAGAACCCTCTTAGATTCTCTCAAATCTGCCACTCAAGCTTACTCTTCTACTCCTGCCGTCGCTCGCAAGGGGAAGCTAAAA
GCCGCCGTTTCGGGCCAAAAATCGGTAGCCGGACCAAAGAAAGAGCCGACTCGTCCGACGGGGATTCTTAAGGCCGTCCAAGTTTCCCCGACTCTCGCTGGCTTCCTCGG
CATGTCCGAGACTTCGCGTGCCGAAGCCGTCAAGCAAATATGGGCCTACATCAAGCTGAATAACCTCCAGAGCCCAGCTGATAAGAGGCAGATCAATTGTGATGAAAAGC
TGAAGTCTATATTTGATGGGAGAGAGAAAGTGGGATTCTTAGAGATTGGAAAATTGTTATCCCCTCATTTTGTGAAATCTAGTTAA
mRNA sequenceShow/hide mRNA sequence
AATTAATGTAAAAAATAGGGATGAAATAAGCTTAATTTTTTAAAACAAAAATAAAAAATAAAATGGTCACCACCTAAAATTTGGAATCACTACGCAACATAAACATATGT
AATGTGAGTTATGTCACAAATCAATTTATTGAAGTTAGATTTTCCCAAAGTTGGGCCAGAGGCCCACAGTCCATCACTGTGGACCCAAACCAAGGGCAGCCCAATTCCTT
CAGCTCATTCTCCGCTTAAAAACTCCCGTTTCCATTTCTTCCAACCTCAGTCGAGCAAAAGCGGCAAAAACCCCTGCACTCACCGTTGTCTTCGTCGGAGCAAAATGGCC
TCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAGGCTGCAGAACCCTCTTAGATTCTCTCAAATCTGCCACTCAAGCTTACTCTTCTACTCCTGCCGTCGCTCGCAAGGG
GAAGCTAAAAGCCGCCGTTTCGGGCCAAAAATCGGTAGCCGGACCAAAGAAAGAGCCGACTCGTCCGACGGGGATTCTTAAGGCCGTCCAAGTTTCCCCGACTCTCGCTG
GCTTCCTCGGCATGTCCGAGACTTCGCGTGCCGAAGCCGTCAAGCAAATATGGGCCTACATCAAGCTGAATAACCTCCAGAGCCCAGCTGATAAGAGGCAGATCAATTGT
GATGAAAAGCTGAAGTCTATATTTGATGGGAGAGAGAAAGTGGGATTCTTAGAGATTGGAAAATTGTTATCCCCTCATTTTGTGAAATCTAGTTAATCATAAACTTCCAA
GTGCATGCGTTGACTTAGTTGTTCTAATAGTTCTCTCTCAACCTGTCTTCCAAATCTATGATGTTGTTTTGTTGTGCTGTGTTTGGCCAATACTATGACTTCACTTTACT
CTTTGGTTTTACTCTGGTTTAAGAGAAGGGGATGTTTCTTACAAGATATTGTTGTTCATTAGTATTCTATAATTAATTAAGGTAGCTTCTGTCTAAATTTTACTTTTAAA
AATCACTTTTTTTGTA
Protein sequenceShow/hide protein sequence
MSQINLLKLDFPKVGPEAHSPSLWTQTKGSPIPSAHSPLKNSRFHFFQPQSSKSGKNPCTHRCLRRSKMASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK
AAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS