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Clc06G00660 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G00660
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTubulin-specific chaperone A
Genome locationClcChr06:577945..582943
RNA-Seq ExpressionClc06G00660
SyntenyClc06G00660
Gene Ontology termsGO:0007021 - tubulin complex assembly (biological process)
GO:0007023 - post-chaperonin tubulin folding pathway (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0048487 - beta-tubulin binding (molecular function)
InterPro domainsIPR004226 - Tubulin binding cofactor A
IPR036126 - Tubulin binding cofactor A superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155762.1 tubulin-folding cofactor A [Momordica charantia]7.2e-4891.15Show/hide
Query:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST
        MAT++NLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMM+PDCHKRLE++LADLKGALAELEESTQEKG EFD+ARST
Subjt:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST

Query:  ITEIESFLKTTEE
        I+E+E+FLKTTEE
Subjt:  ITEIESFLKTTEE

XP_022959143.1 tubulin-folding cofactor A [Cucurbita moschata]1.4e-4692.04Show/hide
Query:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST
        MAT+KNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLE+ALADLKG L ELE+STQ KG EF+DARS 
Subjt:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST

Query:  ITEIESFLKTTEE
        ITEIESFLKTTEE
Subjt:  ITEIESFLKTTEE

XP_023006149.1 tubulin-folding cofactor A [Cucurbita maxima]2.1e-4793.81Show/hide
Query:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST
        MAT+KNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKG L ELE+STQ KG EFDDARS 
Subjt:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST

Query:  ITEIESFLKTTEE
        ITEIESFLKTTEE
Subjt:  ITEIESFLKTTEE

XP_023548059.1 tubulin-folding cofactor A [Cucurbita pepo subsp. pepo]4.7e-4792.92Show/hide
Query:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST
        MAT+KNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKG L ELE+STQ +G EFDDARS 
Subjt:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST

Query:  ITEIESFLKTTEE
        ITEIESFLKTTEE
Subjt:  ITEIESFLKTTEE

XP_038907024.1 tubulin-folding cofactor A [Benincasa hispida]1.2e-4793.81Show/hide
Query:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST
        MAT+KNLKIKTATCKRIIKELHSYEKEVE EAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESAL DLKGALAELE+STQEKG EF+DARST
Subjt:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST

Query:  ITEIESFLKTTEE
        ITEIESFL+TTEE
Subjt:  ITEIESFLKTTEE

TrEMBL top hitse value%identityAlignment
A0A0A0KER0 Tubulin-specific chaperone A2.8e-4587.83Show/hide
Query:  VSMATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDAR
        + MAT+KNLKIKTATCKRI+KEL SYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLE ALADLK ALAELE+STQEKG EFDDAR
Subjt:  VSMATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDAR

Query:  STITEIESFLKTTEE
        STI ++ESFLK  EE
Subjt:  STITEIESFLKTTEE

A0A5D3DLX2 Tubulin-specific chaperone A2.8e-4587.83Show/hide
Query:  VSMATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDAR
        + MAT+KNLKIKTATCKRI+KEL SYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLE ALADLK ALAELE+ST+EKG EFDDAR
Subjt:  VSMATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDAR

Query:  STITEIESFLKTTEE
        STI +IESFLK TEE
Subjt:  STITEIESFLKTTEE

A0A6J1DQ83 Tubulin-specific chaperone A3.5e-4891.15Show/hide
Query:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST
        MAT++NLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMM+PDCHKRLE++LADLKGALAELEESTQEKG EFD+ARST
Subjt:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST

Query:  ITEIESFLKTTEE
        I+E+E+FLKTTEE
Subjt:  ITEIESFLKTTEE

A0A6J1H416 Tubulin-specific chaperone A6.6e-4792.04Show/hide
Query:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST
        MAT+KNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLE+ALADLKG L ELE+STQ KG EF+DARS 
Subjt:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST

Query:  ITEIESFLKTTEE
        ITEIESFLKTTEE
Subjt:  ITEIESFLKTTEE

A0A6J1KV46 Tubulin-specific chaperone A1.0e-4793.81Show/hide
Query:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST
        MAT+KNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKG L ELE+STQ KG EFDDARS 
Subjt:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST

Query:  ITEIESFLKTTEE
        ITEIESFLKTTEE
Subjt:  ITEIESFLKTTEE

SwissProt top hitse value%identityAlignment
O04350 Tubulin-folding cofactor A5.2e-4175Show/hide
Query:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST
        MATI+NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRMM+PDCHKRLESALADLK  LAELEE+ +++G E +DA+ T
Subjt:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST

Query:  ITEIESFLKTTE
        + ++E    T +
Subjt:  ITEIESFLKTTE

O75347 Tubulin-specific chaperone A7.8e-1338.24Show/hide
Query:  IKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITE
        ++ +KIKT   KR++KE   YEKE +++  K   M+ +  + YD+K+Q  +L ESRMM+PDC +RLE+A  DL+  L    E   E+ +E+ +AR  +  
Subjt:  IKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITE

Query:  IE
        ++
Subjt:  IE

P48428 Tubulin-specific chaperone A5.1e-1237.25Show/hide
Query:  IKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITE
        ++ +KIKT   +R++KE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMM+PDC +RLE+A  DL+  L    E   E+ +E+ +AR  +  
Subjt:  IKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITE

Query:  IE
        ++
Subjt:  IE

P80585 Tubulin-specific chaperone A7.8e-1341.18Show/hide
Query:  IKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITE
        ++ +KIKT   KR+ KE   YEKE +++  K   MK +  D Y +K+Q  +L ESRMM+PDC +RLE A ADL   L    E   E+ +E+ +ARS +  
Subjt:  IKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITE

Query:  IE
        ++
Subjt:  IE

Q6PEC1 Tubulin-specific chaperone A1.7e-1238.24Show/hide
Query:  IKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITE
        ++ +KIKT   KR++KE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMM+PDC +RLE+A  DL+  L    E   E+ +E+ +AR  +  
Subjt:  IKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITE

Query:  IE
        ++
Subjt:  IE

Arabidopsis top hitse value%identityAlignment
AT2G30410.1 tubulin folding cofactor A (KIESEL)3.7e-4275Show/hide
Query:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST
        MATI+NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRMM+PDCHKRLESALADLK  LAELEE+ +++G E +DA+ T
Subjt:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST

Query:  ITEIESFLKTTE
        + ++E    T +
Subjt:  ITEIESFLKTTE

AT2G30410.2 tubulin folding cofactor A (KIESEL)3.7e-4275Show/hide
Query:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST
        MATI+NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRMM+PDCHKRLESALADLK  LAELEE+ +++G E +DA+ T
Subjt:  MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARST

Query:  ITEIESFLKTTE
        + ++E    T +
Subjt:  ITEIESFLKTTE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAGCTTCAAATATGCCAAAATTAGCGTAGAACGTAATTCCATCAGTTTTTGTTTCATGTTATTGTTACCAACTATTTGGGAAGTTTCTCAAAATTTATCTTCACA
GCATTACCAGGTCAGTATGGCTACTATAAAGAACCTGAAGATTAAGACAGCAACCTGCAAACGAATTATCAAGGAGTTGCATTCTTATGAGAAGGAGGTTGAGAGAGAAG
CTGCTAAAACAGCTGACATGAAAGAAAAAGGGGCTGACCCTTATGACCTTAAACAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGT
CTGGAGTCCGCATTAGCTGATCTGAAAGGAGCACTGGCTGAACTGGAAGAATCAACGCAAGAGAAAGGCCAGGAGTTCGACGACGCTCGAAGTACAATCACCGAGATCGA
AAGTTTCCTAAAGACAACAGAGGAATAG
mRNA sequenceShow/hide mRNA sequence
GAAAAGAGGTGAGAATGGAAACAAACCATAGAGTAAGGCAGAGAGACAATCCTTTGAAGGAGAAGCCATTGGAGGCCATAGCCAAGAAACCCCATGGAAGCAGCCATGAA
CATCACCACCCACAAAGGAAAATATAAGAGAGCGACGCCAGAGCACCACCCGAAGGCCTTGCCAAGGTCGGAAGCCACCGCCAGATAGTTGAGCTCCACCTGCGACATCC
CCAGAGCCGCCTTCAGATCGGAAGAATAAGAGGGGAAATCAAAATTTGTGCCTGCAAATGCCTGAATCCATATTGCCGCCACCAGCACCACCCATTGTCCAGGTTGGTTC
AGCATCCTTTTCTGTTTTTTGATTGGAAGAAGGGGAATTTGTGGAGCTTTTCTCTGCTTTATTTTCATGGCGGAGGCCTGGGGAGAATAATGATTGAAAAAAGCGTTAGG
GGAATGGTTGGGTCGGTAGGCCATACCAGAAGGGTGGGTAAGAAAGTGGTTGGATCCAACGATGGTTGATGACTGATGTAACCAAAATTGTCCTTTTCTTTGAATGCATA
GCTTCAAATATGCCAAAATTAGCGTAGAACGTAATTCCATCAGTTTTTGTTTCATGTTATTGTTACCAACTATTTGGGAAGTTTCTCAAAATTTATCTTCACAGCATTAC
CAGGTCAGTATGGCTACTATAAAGAACCTGAAGATTAAGACAGCAACCTGCAAACGAATTATCAAGGAGTTGCATTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCTAA
AACAGCTGACATGAAAGAAAAAGGGGCTGACCCTTATGACCTTAAACAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTGGAGT
CCGCATTAGCTGATCTGAAAGGAGCACTGGCTGAACTGGAAGAATCAACGCAAGAGAAAGGCCAGGAGTTCGACGACGCTCGAAGTACAATCACCGAGATCGAAAGTTTC
CTAAAGACAACAGAGGAATAG
Protein sequenceShow/hide protein sequence
MHSFKYAKISVERNSISFCFMLLLPTIWEVSQNLSSQHYQVSMATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKR
LESALADLKGALAELEESTQEKGQEFDDARSTITEIESFLKTTEE