CuGenDBv2

Gene ID	Clc06G00770
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3
Genome location	ClcChr06:701678..703017
RNA-Seq Expression	Clc06G00770
Synteny	Clc06G00770
Gene Ontology terms	GO:0032981 - mitochondrial respiratory chain complex I assembly (biological process) GO:0005634 - nucleus (cellular component) GO:0005743 - mitochondrial inner membrane (cellular component)
InterPro domains	IPR007523 - NDUFAF3/Mth938 domain-containing protein IPR036748 - MTH938-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

TYK24537.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 3-like [Cucumis melo var. makuwa]

1.6e-51

93.64

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Query:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS
        MAARQKAVATLP+LIR+L+NDRR+PG SQPLPSLRRAFSLYDQINLIDNVP+DQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITP+SLS
Subjt:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS

Query:  IFQIVRPIPG
        IFQIVRPIPG
Subjt:  IFQIVRPIPG

XP_022964366.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucurbita moschata]

5.4e-52

96.33

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Query:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS
        MAARQKAVATLPNLIRS+R DRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNG+DYEGSLLCVGNLLMSWSPKKFSEITPESLS
Subjt:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS

Query:  IFQIVRPIP
        IFQI+RPIP
Subjt:  IFQIVRPIP

XP_023000217.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucurbita maxima]

1.0e-50

94.5

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Query:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS
        MAARQKAVATLPNLIRS+R DRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ YTETGFTVNG+DYEGSLLCVG+LLMSWSPKKFSEITPESLS
Subjt:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS

Query:  IFQIVRPIP
        IFQI+RPIP
Subjt:  IFQIVRPIP

XP_023513625.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucurbita pepo subsp. pepo]

5.4e-52

96.33

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Query:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS
        MAARQKAVATLPNLIRS+R DRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNG+DYEGSLLCVGNLLMSWSPKKFSEITPESLS
Subjt:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS

Query:  IFQIVRPIP
        IFQI+RPIP
Subjt:  IFQIVRPIP

XP_038906819.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Benincasa hispida]

1.3e-53

100

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Query:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS
        MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS
Subjt:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS

Query:  IFQIVRPIP
        IFQIVRPIP
Subjt:  IFQIVRPIP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CB84 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3

4.9e-51

93.58

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Query:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS
        MAARQKAVATLP+LIR+L+NDRR+PG SQPLPSLRRAFSLYDQINLIDNVP+DQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITP+SLS
Subjt:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS

Query:  IFQIVRPIP
        IFQIVRPIP
Subjt:  IFQIVRPIP

A0A5A7TES8 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3

4.9e-51

93.58

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Query:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS
        MAARQKAVATLP+LIR+L+NDRR+PG SQPLPSLRRAFSLYDQINLIDNVP+DQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITP+SLS
Subjt:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS

Query:  IFQIVRPIP
        IFQIVRPIP
Subjt:  IFQIVRPIP

A0A5D3DLM8 NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex assembly factor 3-like

7.6e-52

93.64

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Query:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS
        MAARQKAVATLP+LIR+L+NDRR+PG SQPLPSLRRAFSLYDQINLIDNVP+DQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITP+SLS
Subjt:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS

Query:  IFQIVRPIPG
        IFQIVRPIPG
Subjt:  IFQIVRPIPG

A0A6J1HIQ3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3

2.6e-52

96.33

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Query:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS
        MAARQKAVATLPNLIRS+R DRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNG+DYEGSLLCVGNLLMSWSPKKFSEITPESLS
Subjt:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS

Query:  IFQIVRPIP
        IFQI+RPIP
Subjt:  IFQIVRPIP

A0A6J1KD25 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3

4.9e-51

94.5

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Query:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS
        MAARQKAVATLPNLIRS+R DRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ YTETGFTVNG+DYEGSLLCVG+LLMSWSPKKFSEITPESLS
Subjt:  MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLS

Query:  IFQIVRPIP
        IFQI+RPIP
Subjt:  IFQIVRPIP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G44525.1 Protein of unknown function (DUF498/DUF598)

3.9e-40

75.89

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Query:  MAARQKAVATLPNLIRSLRNDRRRPGLSQP-LPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESL
        MA R K++ATLP LI+S+R  +  P  S P LPSLRRAFSLYDQINLIDNVPEDQLRFQ + +T FTVNGV YEGSLLCVGNLLMSWSP+KFSEIT +SL
Subjt:  MAARQKAVATLPNLIRSLRNDRRRPGLSQP-LPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESL

Query:  SIFQIVRPIPGL
        SIFQ VRPIP L
Subjt:  SIFQIVRPIPGL

AT3G60150.1 Protein of unknown function (DUF498/DUF598)

2.1e-41

76.79

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Query:  MAARQKAVATLPNLIRSLRND-RRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESL
        MA RQKA+ATLP LI+S+RN+  ++P L   LPSLRRAFSLYDQINLIDNVPEDQLRFQ + ET FTVNGV YEGSLLCVGNLLMSWSP+ FS+IT +SL
Subjt:  MAARQKAVATLPNLIRSLRND-RRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESL

Query:  SIFQIVRPIPGL
        SIFQ VRPIP L
Subjt:  SIFQIVRPIPGL

Sequences

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CDS sequence

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ATGGCGGCAAGACAGAAAGCGGTGGCGACGCTGCCGAATCTAATCAGAAGCCTTAGAAACGATCGCCGGAGGCCCGGTCTCAGCCAGCCTCTGCCGTCGTTGAGACGCGC
ATTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCCGAAGATCAGCTTCGGTTTCAACGATATACTGAGACGGGGTTCACAGTGAACGGAGTGGATTATGAGG
GGAGCTTGCTATGCGTTGGGAATTTGTTGATGTCTTGGAGTCCTAAGAAATTTTCAGAAATTACGCCTGAGAGCCTATCTATCTTCCAGATTGTGCGGCCTATTCCAGGA
TTAGATCTTGGAGAATTTGAAGCATGTACCGAGTTGAAAATCAAGATGAATCTTAAGTTCTTAAACAGGAAGATGATGAGGGTTTTCTTTTTCTTCTCTCCTTCATTTTC
TGATTGGCAAGTCTACCCTCCATATATTTTGATTACGCTAGAAGAGGGAACAGAACCACATGAGGTAGCTGCATCGGCTGACTAA

mRNA sequence

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Protein sequence

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MAARQKAVATLPNLIRSLRNDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPESLSIFQIVRPIPG
LDLGEFEACTELKIKMNLKFLNRKMMRVFFFFSPSFSDWQVYPPYILITLEEGTEPHEVAASAD

Clc06G00770 (gene) of Watermelon (cordophanus) v2 genome