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Clc06G01040 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G01040
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description60S ribosomal protein L38
Genome locationClcChr06:901658..905273
RNA-Seq ExpressionClc06G01040
SyntenyClc06G01040
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDP18171.1 unnamed protein product [Coffea canephora]3.6e-3076.7Show/hide
Query:  LAMENGVEGISICSARVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV
        L ++ G       + RVLS     LL + SS+  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV
Subjt:  LAMENGVEGISICSARVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV

Query:  QDL
        QDL
Subjt:  QDL

KAE8646721.1 hypothetical protein Csa_005163 [Cucumis sativus]2.2e-3282.8Show/hide
Query:  SICSARVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        S+   RVL+LHNQ+L G+L SAT MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP    ++L
Subjt:  SICSARVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

QCG74680.1 60S ribosomal protein L38-like protein, partial [Coffea canephora]1.4e-2995.95Show/hide
Query:  SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        SS+  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

XP_027917741.1 60S ribosomal protein L38-like [Vigna unguiculata]1.4e-2989.74Show/hide
Query:  LGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        +G L +  TMPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  LGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

XP_038906668.1 60S ribosomal protein L38-like [Benincasa hispida]2.6e-3696.51Show/hide
Query:  LSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        LSLHNQ+LLG+LSSAT MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  LSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

TrEMBL top hitse value%identityAlignment
A0A068VBT7 Uncharacterized protein1.7e-3076.7Show/hide
Query:  LAMENGVEGISICSARVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV
        L ++ G       + RVLS     LL + SS+  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV
Subjt:  LAMENGVEGISICSARVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV

Query:  QDL
        QDL
Subjt:  QDL

A0A4D6T016 60S ribosomal protein L38-like protein (Fragment)6.6e-3095.95Show/hide
Query:  SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        SS+  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A4Y1QP30 Ribosomal L38e protein family2.5e-2995.89Show/hide
Query:  SATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        SA  MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  SATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A5E4FVX4 PREDICTED: 60S ribosomal (Fragment)2.5e-2995.89Show/hide
Query:  SATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        SA  MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  SATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

M5XHK5 Uncharacterized protein (Fragment)2.5e-2995.89Show/hide
Query:  SATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        SA  MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  SATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L381.3e-3095.65Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

P46291 60S ribosomal protein L381.6e-2891.3Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q32PB9 60S ribosomal protein L383.4e-2376.81Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q95V84 60S ribosomal protein L382.1e-2582.61Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPPGL+V++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q9JJI8 60S ribosomal protein L381.2e-2378.26Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V+DL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family9.1e-3295.65Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

AT3G59540.1 Ribosomal L38e protein family9.1e-3295.65Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

ATMG00090.1 structural constituent of ribosome;protein binding2.0e-0734.4Show/hide
Query:  IKCWNLMGKDKVIELIEKFMDLGGIGELKK---------------------------------GNRDDDRDHTEKQRNFSGSNQCFFDCSRHLFQLRNKT
        +KCWNL+GKDK++ELIEK  +LGGI EL K                                  NR + +   E  +  S             FQL+NK 
Subjt:  IKCWNLMGKDKVIELIEKFMDLGGIGELKK---------------------------------GNRDDDRDHTEKQRNFSGSNQCFFDCSRHLFQLRNKT

Query:  RSFRFITKKHIPLAMENGVEGISIC
        RSF  I  K I   +  GVEGI IC
Subjt:  RSFRFITKKHIPLAMENGVEGISIC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGACGAAGCTCTCTTTGAGAAGACCTATTGCTACTCTGAATACGAGGCGCAATAAGGGACTTCATTCTTCCAGACGTAAACCCATTGTTTGTGAGAAAGTCACCAA
TATATTAGGATTTCCAAGATCCTCAAAAGACGAATTTGAAAGAGGTCCTAGTAAAGGGATCAAATGTTGGAACCTCATGGGTAAGGATAAGGTAATAGAATTGATAGAGA
AATTCATGGATCTAGGTGGGATAGGAGAATTGAAAAAGGGAAATAGAGACGATGATAGAGATCACACTGAGAAACAAAGGAATTTTTCAGGTTCAAATCAGTGCTTCTTT
GATTGCTCAAGACATCTTTTTCAACTGAGAAACAAAACAAGATCATTTCGTTTCATTACGAAGAAGCATATTCCATTAGCAATGGAAAATGGGGTTGAGGGGATCAGTAT
ATGTTCAGCTAGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTG
CTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAG
AAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGACGAAGCTCTCTTTGAGAAGACCTATTGCTACTCTGAATACGAGGCGCAATAAGGGACTTCATTCTTCCAGACGTAAACCCATTGTTTGTGAGAAAGTCACCAA
TATATTAGGATTTCCAAGATCCTCAAAAGACGAATTTGAAAGAGGTCCTAGTAAAGGGATCAAATGTTGGAACCTCATGGGTAAGGATAAGGTAATAGAATTGATAGAGA
AATTCATGGATCTAGGTGGGATAGGAGAATTGAAAAAGGGAAATAGAGACGATGATAGAGATCACACTGAGAAACAAAGGAATTTTTCAGGTTCAAATCAGTGCTTCTTT
GATTGCTCAAGACATCTTTTTCAACTGAGAAACAAAACAAGATCATTTCGTTTCATTACGAAGAAGCATATTCCATTAGCAATGGAAAATGGGGTTGAGGGGATCAGTAT
ATGTTCAGCTAGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTG
CTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAG
AAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGA
Protein sequenceShow/hide protein sequence
MMTKLSLRRPIATLNTRRNKGLHSSRRKPIVCEKVTNILGFPRSSKDEFERGPSKGIKCWNLMGKDKVIELIEKFMDLGGIGELKKGNRDDDRDHTEKQRNFSGSNQCFF
DCSRHLFQLRNKTRSFRFITKKHIPLAMENGVEGISICSARVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSE
KADKLKQSLPPGLSVQDL