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Clc06G01060 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G01060
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description60S ribosomal protein L38
Genome locationClcChr06:910030..915379
RNA-Seq ExpressionClc06G01060
SyntenyClc06G01060
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDP18171.1 unnamed protein product [Coffea canephora]1.6e-2995.95Show/hide
Query:  SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        SS+  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

KAE8646721.1 hypothetical protein Csa_005163 [Cucumis sativus]4.5e-3274.76Show/hide
Query:  DNIRSFKMISHVSSIWVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV
        D+ ++ K+   +  + VL+LHNQ+L G+L SAT MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP    
Subjt:  DNIRSFKMISHVSSIWVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV

Query:  QDL
        ++L
Subjt:  QDL

QCG74680.1 60S ribosomal protein L38-like protein, partial [Coffea canephora]1.6e-2995.95Show/hide
Query:  SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        SS+  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

XP_027917741.1 60S ribosomal protein L38-like [Vigna unguiculata]1.6e-2989.74Show/hide
Query:  LGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        +G L +  TMPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  LGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

XP_038906668.1 60S ribosomal protein L38-like [Benincasa hispida]3.0e-3676.79Show/hide
Query:  GFGVVTESLDNIRSFKMISHVSSIWVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLK
        GFG          +  + ++   +  LSLHNQ+LLG+LSSAT MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLK
Subjt:  GFGVVTESLDNIRSFKMISHVSSIWVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLK

Query:  QSLPPGLSVQDL
        QSLPPGLSVQDL
Subjt:  QSLPPGLSVQDL

TrEMBL top hitse value%identityAlignment
A0A068VBT7 Uncharacterized protein7.7e-3095.95Show/hide
Query:  SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        SS+  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A4D6T016 60S ribosomal protein L38-like protein (Fragment)7.7e-3095.95Show/hide
Query:  SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        SS+  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A4Y1QP30 Ribosomal L38e protein family2.9e-2995.89Show/hide
Query:  SATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        SA  MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  SATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A5E4FVX4 PREDICTED: 60S ribosomal (Fragment)2.9e-2995.89Show/hide
Query:  SATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        SA  MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  SATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

V7CR14 Uncharacterized protein (Fragment)1.3e-2965.87Show/hide
Query:  GNEGNLPQGFGVVTESLD-NIRSFKMISHVSSIWVLSLHNQKLLGNLSSAT-----TMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLY
        GN+ + P G  +V  S +  IR + +   +  ++ L+ H   L+  L SAT     TMPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLY
Subjt:  GNEGNLPQGFGVVTESLD-NIRSFKMISHVSSIWVLSLHNQKLLGNLSSAT-----TMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLY

Query:  TLCVFDSEKADKLKQSLPPGLSVQDL
        TLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  TLCVFDSEKADKLKQSLPPGLSVQDL

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L381.5e-3095.65Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

P46291 60S ribosomal protein L381.8e-2891.3Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q32PB9 60S ribosomal protein L384.0e-2376.81Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q95V84 60S ribosomal protein L382.5e-2582.61Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPPGL+V++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q9JJI8 60S ribosomal protein L381.4e-2378.26Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V+DL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family1.1e-3195.65Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

AT3G59540.1 Ribosomal L38e protein family1.1e-3195.65Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCCCGAGCGAGAAGCGAGACTTGAGCGAGAGCACGAGAGCCGAGACAGCGAAACCGGCGAGAGAGCAATACCACGAGGCTGCGGCGACACTGGGCGCGGGGAAAG
CGTGAGTCGAGCGGGAGAGCGAGAGAGCGAGAGCGCGAGAGAGCGGGAGCTAGCGAGAGATACCACGAGAGTGACTGTGCGATTGGGCGCGGGAGACCGTGAGGCGAGGG
AAGAAAGTGAGAGCGGGAGAGCGAGACAGCTAGCGAGAGTTGAATGCCGACAGCGACACTCAAGGCGAAACCCGCGACACCCGACGCGTGAAACCTCCGGAGAGTCACGG
AAACTGAAGGAGAGCGAGAGAGAGAGGTGTCGGGCAGAGGGAGGCTGGCGGCGACGGCGGCGGCGAAAGGGAAAGGGAAAGGAGAGAGATGCGGCGGAGAGAGAGAGAGA
ATTTTTTTTTTTCTTTTCTCTTTTTCTTTTTGACTGCACGGGAAACGAGGGAAATTTACCTCAAGGGTTCGGGGTCGTTACAGAAAGCCTAGATAACATTCGATCCTTCA
AGATGATATCTCATGTTTCTTCAATATGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGCCGAAACAAATTCACGAGATCAAA
GATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTG
TGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTCCCGAGCGAGAAGCGAGACTTGAGCGAGAGCACGAGAGCCGAGACAGCGAAACCGGCGAGAGAGCAATACCACGAGGCTGCGGCGACACTGGGCGCGGGGAAAG
CGTGAGTCGAGCGGGAGAGCGAGAGAGCGAGAGCGCGAGAGAGCGGGAGCTAGCGAGAGATACCACGAGAGTGACTGTGCGATTGGGCGCGGGAGACCGTGAGGCGAGGG
AAGAAAGTGAGAGCGGGAGAGCGAGACAGCTAGCGAGAGTTGAATGCCGACAGCGACACTCAAGGCGAAACCCGCGACACCCGACGCGTGAAACCTCCGGAGAGTCACGG
AAACTGAAGGAGAGCGAGAGAGAGAGGTGTCGGGCAGAGGGAGGCTGGCGGCGACGGCGGCGGCGAAAGGGAAAGGGAAAGGAGAGAGATGCGGCGGAGAGAGAGAGAGA
ATTTTTTTTTTTCTTTTCTCTTTTTCTTTTTGACTGCACGGGAAACGAGGGAAATTTACCTCAAGGGTTCGGGGTCGTTACAGAAAGCCTAGATAACATTCGATCCTTCA
AGATGATATCTCATGTTTCTTCAATATGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGCCGAAACAAATTCACGAGATCAAA
GATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTG
TGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAAAGTCTCAAATGATCACAAGAATGAG
AACCAAAATTTTTGTATGATGTTTGCTTTCCCAACTATTCAGAATACATTTAAATTGGATTTGAGCCTTTAGTAATCCGTATTTATCTTCGTTTTCCAGTGGATTGGTTT
AAATTTAGAATTGTTATGTTGAGTTTATCATGTGAGTTGATATTTCGTTGAATTCATGGCTACTCCCGCGGTGTTTATAACCAAAGATGGATTTGAT
Protein sequenceShow/hide protein sequence
MIPEREARLEREHESRDSETGERAIPRGCGDTGRGESVSRAGERESESARERELARDTTRVTVRLGAGDREAREESESGRARQLARVECRQRHSRRNPRHPTRETSGESR
KLKESERERCRAEGGWRRRRRRKGKGKERDAAEREREFFFFFSLFLFDCTGNEGNLPQGFGVVTESLDNIRSFKMISHVSSIWVLSLHNQKLLGNLSSATTMPKQIHEIK
DFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL