; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G01740 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G01740
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionU2 small nuclear ribonucleoprotein A'
Genome locationClcChr06:1615095..1621895
RNA-Seq ExpressionClc06G01740
SyntenyClc06G01740
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0030620 - U2 snRNA binding (molecular function)
InterPro domainsIPR003603 - U2A'/phosphoprotein 32 family A, C-terminal
IPR032675 - Leucine-rich repeat domain superfamily
IPR044640 - U2 small nuclear ribonucleoprotein A'


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140564.3 U2 small nuclear ribonucleoprotein A' [Cucumis sativus]2.6e-9068.27Show/hide
Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVFISLELQHLLSPFPG---------------
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE       +SD            +RL  L+  +  +   ++P  G               
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVFISLELQHLLSPFPG---------------

Query:  LVNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKK
        LVNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNK                          ERLEARNLFSSKEVEEEAKK
Subjt:  LVNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKK

Query:  ESVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVK
        ESV+TF+PGE E ASKPVEEKQT NVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD +DKTMSDSGD+E+V     
Subjt:  ESVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVK

Query:  EQSNDESTPMEQ
          +NDESTPMEQ
Subjt:  EQSNDESTPMEQ

XP_022148876.1 U2 small nuclear ribonucleoprotein A' [Momordica charantia]2.7e-9570.1Show/hide
Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE       +SD            +RL  L+                  +L  L+     L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNK                          ERLEAR+LFSSKEVEEEAK E
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE

Query:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKE
        SV+TF+PGE ENASKP EEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDT+D+TMSD  D++NVSKDVKE
Subjt:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKE

Query:  QSNDESTPMEQ
        Q NDES PMEQ
Subjt:  QSNDESTPMEQ

XP_022960458.1 U2 small nuclear ribonucleoprotein A' [Cucurbita moschata]5.8e-9871.38Show/hide
Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE       +SD            +RL  L+                  +L  L+     L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNK                          ERLEARNLFSSKEVEEEAKKE
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE

Query:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKE
        SV+TF+PGE ENASKPVEEKQTS +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDT+DKTMSD GD+ENVSKD KE
Subjt:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKE

Query:  QSNDESTPMEQ
        QSNDESTPMEQ
Subjt:  QSNDESTPMEQ

XP_023005060.1 U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]1.7e-9771.06Show/hide
Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE       +SD            +RL  L+                  +L  L+     L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNK                          ERLEARNLFSSKEVEEEAKKE
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE

Query:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKE
        SV+TF+PGE ENASKPVEEKQTS +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDT+DKT+SD GD+ENVSKD KE
Subjt:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKE

Query:  QSNDESTPMEQ
        QSNDESTPMEQ
Subjt:  QSNDESTPMEQ

XP_038907085.1 U2 small nuclear ribonucleoprotein A' [Benincasa hispida]2.0e-9872.03Show/hide
Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE       +SD            +RL  L+                  +L  L+     L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNK                          ERLEARNLFSSKEVEEEAKKE
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE

Query:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKE
        SV+ F+PGE ENASKPVEEKQTSNVSAPT EQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLL+DNTVPNTTK+T+DKTMSDSGD+ENVSKDVKE
Subjt:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKE

Query:  QSNDESTPMEQ
        QSNDE TPMEQ
Subjt:  QSNDESTPMEQ

TrEMBL top hitse value%identityAlignment
A0A1S3CAU7 U2 small nuclear ribonucleoprotein A'4.1e-8967.63Show/hide
Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVFISLELQHLLSPFPG---------------
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE       +SD            +RL  L+  +  +   ++P  G               
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVFISLELQHLLSPFPG---------------

Query:  LVNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKK
        LVNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNK                          ERLEARNLFSSKEVEEEAKK
Subjt:  LVNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKK

Query:  ESVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVK
        ESV+TF+ GE E ASKPVEEKQT NVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT PN TKD +DKT S SGD+E+V     
Subjt:  ESVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVK

Query:  EQSNDESTPMEQ
          +NDESTPMEQ
Subjt:  EQSNDESTPMEQ

A0A6J1D6P1 U2 small nuclear ribonucleoprotein A'1.3e-9570.1Show/hide
Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE       +SD            +RL  L+                  +L  L+     L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNK                          ERLEAR+LFSSKEVEEEAK E
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE

Query:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKE
        SV+TF+PGE ENASKP EEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDT+D+TMSD  D++NVSKDVKE
Subjt:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKE

Query:  QSNDESTPMEQ
        Q NDES PMEQ
Subjt:  QSNDESTPMEQ

A0A6J1H905 U2 small nuclear ribonucleoprotein A'2.8e-9871.38Show/hide
Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE       +SD            +RL  L+                  +L  L+     L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNK                          ERLEARNLFSSKEVEEEAKKE
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE

Query:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKE
        SV+TF+PGE ENASKPVEEKQTS +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDT+DKTMSD GD+ENVSKD KE
Subjt:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKE

Query:  QSNDESTPMEQ
        QSNDESTPMEQ
Subjt:  QSNDESTPMEQ

A0A6J1KWC8 U2 small nuclear ribonucleoprotein A'8.2e-9871.06Show/hide
Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE       +SD            +RL  L+                  +L  L+     L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNK                          ERLEARNLFSSKEVEEEAKKE
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE

Query:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKE
        SV+TF+PGE ENASKPVEEKQTS +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDT+DKT+SD GD+ENVSKD KE
Subjt:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKE

Query:  QSNDESTPMEQ
        QSNDESTPMEQ
Subjt:  QSNDESTPMEQ

E5GB46 U2 small nuclear ribonucleoprotein a4.1e-8967.63Show/hide
Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVFISLELQHLLSPFPG---------------
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE       +SD            +RL  L+  +  +   ++P  G               
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVFISLELQHLLSPFPG---------------

Query:  LVNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKK
        LVNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNK                          ERLEARNLFSSKEVEEEAKK
Subjt:  LVNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKK

Query:  ESVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVK
        ESV+TF+ GE E ASKPVEEKQT NVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT PN TKD +DKT S SGD+E+V     
Subjt:  ESVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVK

Query:  EQSNDESTPMEQ
          +NDESTPMEQ
Subjt:  EQSNDESTPMEQ

SwissProt top hitse value%identityAlignment
P09661 U2 small nuclear ribonucleoprotein A'7.3e-2737.5Show/hide
Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGAT----EVSDF-----------------------HRLICLVFISLE-----LQHLLSPFPGL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT    +  DF                       +  IC +   L+     L  L+     L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGAT----EVSDF-----------------------HRLICLVFISLE-----LQHLLSPFPGL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  VRVLDF+KV+ K                          ER EA  +F  K   + AK  
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE

Query:  SVR--TFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
        + R  TF PG    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  SVR--TFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

P43333 U2 small nuclear ribonucleoprotein A'6.4e-5553.96Show/hide
Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL
        MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATE       +SD            +RL  L+                  +L  L+     L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE
        VNLVEIDPLAS+PKLQ+LSLLDNNITKK NYRLYVIHKLKS+RVLDF K++ K                          ER EA +LFSSKE EEE KK 
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE

Query:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        S       E +  S+  E  +T  V APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL

P57784 U2 small nuclear ribonucleoprotein A'6.2e-2637.12Show/hide
Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGAT----EVSDF-----------------------HRLICLVFISLE-----LQHLLSPFPGL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT    +  DF                       +  IC +   L+     L  L+     L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGAT----EVSDF-----------------------HRLICLVFISLE-----LQHLLSPFPGL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  VRVLDF+KV+ K                          ER EA  +F  K   + AK  
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE

Query:  SVR--TFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
        + R  TF PG    A  P ++K+      P+   + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  SVR--TFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Q4R8Y8 U2 small nuclear ribonucleoprotein A'7.3e-2737.5Show/hide
Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGAT----EVSDF-----------------------HRLICLVFISLE-----LQHLLSPFPGL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT    +  DF                       +  IC +   L+     L  L+     L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGAT----EVSDF-----------------------HRLICLVFISLE-----LQHLLSPFPGL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  VRVLDF+KV+ K                          ER EA  +F  K   + AK  
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE

Query:  SVR--TFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
        + R  TF PG    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  SVR--TFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Q9BLB6 Probable U2 small nuclear ribonucleoprotein A'4.8e-1831.82Show/hide
Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGAT-------EVSD-----------FHRLICLVFISLELQH----LLSPFPGLVNLV------
        MVRLT +L  + P F N++  RE++LRG KI VIEN+G T       +++D           F RL  L   +  + +    + +  P L  L       
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGAT-------EVSD-----------FHRLICLVFISLELQH----LLSPFPGLVNLV------

Query:  ----EIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEE--EAK
            +I+PLA   KL++++ + N IT K NYR+Y+I+KL +VRV+DF +VR                 LT         ER  A+ +F  K  ++  +A 
Subjt:  ----EIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEE--EAK

Query:  KESVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
        ++SV T  P E E       E  +   +  T E    IK AI N+++L EV  L+  L SG++P
Subjt:  KESVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Arabidopsis top hitse value%identityAlignment
AT1G09760.1 U2 small nuclear ribonucleoprotein A4.5e-5653.96Show/hide
Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL
        MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATE       +SD            +RL  L+                  +L  L+     L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------VSD-----------FHRLICLVF--------------ISLELQHLLSPFPGL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE
        VNLVEIDPLAS+PKLQ+LSLLDNNITKK NYRLYVIHKLKS+RVLDF K++ K                          ER EA +LFSSKE EEE KK 
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKE

Query:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        S       E +  S+  E  +T  V APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  SVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAGACTTACAGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGAAACAAGATAGCAGTGATAGAAAACCT
AGGTGCCACCGAGGTGAGTGATTTCCACCGTCTTATATGTCTTGTTTTTATATCTCTGGAACTCCAACATCTGTTAAGTCCGTTTCCGGGACTTGTGAACTTGGTAGAGA
TCGACCCGCTGGCATCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAACTATAGATTGTATGTTATTCACAAGTTAAAGTCAGTC
CGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGGGGTTCCACTCAACTTCATTGAACTCCAATTCGATGTGTCTGGCTTAACTCTTGATCAACAGTTGGACCTTGGAGC
TGAGAGATTGGAGGCTAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAGAAGGAATCTGTGAGGACGTTCATTCCAGGTGAGGCAGAGAATGCATCCAAAC
CTGTCGAGGAGAAACAAACTTCAAATGTGTCTGCACCAACACCAGAGCAGATTATAGCTATTAAGGCAGCCATTGTTAACTCCCAAACTCTTGAAGAGGTCGCAAGATTA
GAACAGGCGCTTAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTTTGGAAGATAATACCGTGCCAAACACCACAAAAGATACAGAGGATAAGACAATGTCCGATAGTGG
AGACCAAGAAAATGTATCCAAGGATGTGAAAGAGCAATCGAATGATGAATCTACACCTATGGAGCAGTTTGAGAAGTCTAAGCAGGGCACTTCCCAGCCTGGGGATGTTA
GGCGGCTACTTTGCTCTTTTGAAGAGTTGGTTCTTTATTTTCTTTCCCTTCTCTTTTTCTGGCAACCATTCCACGAGAACAAGGGCAGAGCACTGTGGCTACAGATTGGA
GCACGCATCCTTAAAGATCAATCAGATAGGCGCCGAATCCAGATCAAAAGGACATAA
mRNA sequenceShow/hide mRNA sequence
CGCCTAAAGCCCTAAACCCCGTCGTCGTCGTCGTCGAAGAACATGGTGAGACTTACAGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAAGAGCGAGA
ACTGGACCTTCGAGGAAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGTGAGTGATTTCCACCGTCTTATATGTCTTGTTTTTATATCTCTGGAACTCCAAC
ATCTGTTAAGTCCGTTTCCGGGACTTGTGAACTTGGTAGAGATCGACCCGCTGGCATCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAG
CCAAACTATAGATTGTATGTTATTCACAAGTTAAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGGGGTTCCACTCAACTTCATTGAACTCCAATTCGA
TGTGTCTGGCTTAACTCTTGATCAACAGTTGGACCTTGGAGCTGAGAGATTGGAGGCTAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAGAAGGAATCTG
TGAGGACGTTCATTCCAGGTGAGGCAGAGAATGCATCCAAACCTGTCGAGGAGAAACAAACTTCAAATGTGTCTGCACCAACACCAGAGCAGATTATAGCTATTAAGGCA
GCCATTGTTAACTCCCAAACTCTTGAAGAGGTCGCAAGATTAGAACAGGCGCTTAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTTTGGAAGATAATACCGTGCCAAA
CACCACAAAAGATACAGAGGATAAGACAATGTCCGATAGTGGAGACCAAGAAAATGTATCCAAGGATGTGAAAGAGCAATCGAATGATGAATCTACACCTATGGAGCAGT
TTGAGAAGTCTAAGCAGGGCACTTCCCAGCCTGGGGATGTTAGGCGGCTACTTTGCTCTTTTGAAGAGTTGGTTCTTTATTTTCTTTCCCTTCTCTTTTTCTGGCAACCA
TTCCACGAGAACAAGGGCAGAGCACTGTGGCTACAGATTGGAGCACGCATCCTTAAAGATCAATCAGATAGGCGCCGAATCCAGATCAAAAGGACATAA
Protein sequenceShow/hide protein sequence
MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEVSDFHRLICLVFISLELQHLLSPFPGLVNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSV
RVLDFKKVRNKGVPLNFIELQFDVSGLTLDQQLDLGAERLEARNLFSSKEVEEEAKKESVRTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARL
EQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKEQSNDESTPMEQFEKSKQGTSQPGDVRRLLCSFEELVLYFLSLLFFWQPFHENKGRALWLQIG
ARILKDQSDRRRIQIKRT