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Clc06G01780 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G01780
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibosome biogenesis NEP1-like protein
Genome locationClcChr06:1648239..1650187
RNA-Seq ExpressionClc06G01780
SyntenyClc06G01780
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33694.1 hypothetical protein [Cucumis melo subsp. melo]4.3e-6286.84Show/hide
Query:  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVIT
        MLVGTRI+G RR ASS T P+AN   +SSSSSS+KGGS  SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVIT
Subjt:  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVIT

Query:  SADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        SADKFINKSFLRKVAHIQ+DTKTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Subjt:  SADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

KAA0039866.1 putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa]3.9e-6387.5Show/hide
Query:  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVIT
        MLVGTRI+G RR ASS T P+AN  ++SSSSSS+KGGS  SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVIT
Subjt:  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVIT

Query:  SADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        SADKFINKSFLRKVAHIQ+DTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
Subjt:  SADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

XP_004140656.2 uncharacterized protein LOC101206372 [Cucumis sativus]2.3e-6884.71Show/hide
Query:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAA-NIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLN
        M LFRTSL   NKMWKSMLV TRI+G RR +SS TTP+A NI+NASS SSS+ GGS  SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +
Subjt:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAA-NIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLN

Query:  KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ+DTKTL DPVHPDPFTRPRNAETLKTAG+DPTRR
Subjt:  KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

XP_008459927.1 PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo]2.3e-6885.8Show/hide
Query:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNK
        M+LFRTSL   NKMWKSMLVGTRI+G RR ASS T P+AN   +SSSSSS+KGGS  SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +K
Subjt:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNK

Query:  KKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        KKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ+DTKTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Subjt:  KKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

XP_038906484.1 uncharacterized protein LOC120092464 [Benincasa hispida]4.7e-6983.82Show/hide
Query:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAAN----IENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVV
        MALF TSLT  NK+WK+MLVG+RI+GKRRLASS T PAAN      ++SSSSSS+KGGSS+SEYMKGEYAPIYIV+GMVAVAVSIGTHTAKQQLLHSPVV
Subjt:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAAN----IENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVV

Query:  NLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        N +KKKRESIPEV+DPDT+I SA+KFINKSFLRKVAHIQ DTKTLPDPVHP+PFTRPRNAETLKTAGVDPTRR
Subjt:  NLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

TrEMBL top hitse value%identityAlignment
A0A0A0KC39 Uncharacterized protein1.1e-6884.71Show/hide
Query:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAA-NIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLN
        M LFRTSL   NKMWKSMLV TRI+G RR +SS TTP+A NI+NASS SSS+ GGS  SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +
Subjt:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAA-NIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLN

Query:  KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ+DTKTL DPVHPDPFTRPRNAETLKTAG+DPTRR
Subjt:  KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

A0A1S3CBE5 uncharacterized protein LOC1034988991.1e-6885.8Show/hide
Query:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNK
        M+LFRTSL   NKMWKSMLVGTRI+G RR ASS T P+AN   +SSSSSS+KGGS  SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +K
Subjt:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNK

Query:  KKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        KKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ+DTKTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Subjt:  KKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

A0A5D3DLZ1 Putative Ribosome biogenesis protein NEP1-like1.9e-6387.5Show/hide
Query:  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVIT
        MLVGTRI+G RR ASS T P+AN  ++SSSSSS+KGGS  SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVIT
Subjt:  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVIT

Query:  SADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        SADKFINKSFLRKVAHIQ+DTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
Subjt:  SADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

A0A6J1D5I0 uncharacterized protein LOC111017496 isoform X13.5e-5477.99Show/hide
Query:  QNKMWKSMLVG--TRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPE
        + K+WKSMLVG  +RIEGKR  ASS T        ASSSSSS       SEYMKGEYAPIYIVMGMV VAV+IGTHTAKQQLLHSPVV L+KKKRESIPE
Subjt:  QNKMWKSMLVG--TRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPE

Query:  VEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPT
        V+DPDTVITSADKF+NKSFLRKVAHIQ+  KTL DP HPDPFTRPRNAETLKTAGVDPT
Subjt:  VEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPT

E5GB52 Uncharacterized protein2.1e-6286.84Show/hide
Query:  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVIT
        MLVGTRI+G RR ASS T P+AN   +SSSSSS+KGGS  SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVIT
Subjt:  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVIT

Query:  SADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        SADKFINKSFLRKVAHIQ+DTKTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Subjt:  SADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G63060.1 unknown protein6.9e-2643.24Show/hide
Query:  VGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSA
        VG +  G RR A++    A    N  S              + GE+AP+ I+ G V +AV +  H+ KQQL+H+P ++  K +R ++ EV+DP+  ++SA
Subjt:  VGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSA

Query:  DKFINKSFLRKVAHIQNDTKT-LPDPVHPDPFTRPRNAETLKTAGVDP
        DKFINKS+LRKV  IQ+ +K  L DP  P+PFT PRNAETL + GV P
Subjt:  DKFINKSFLRKVAHIQNDTKT-LPDPVHPDPFTRPRNAETLKTAGVDP

AT5G07330.1 unknown protein1.3e-2134.48Show/hide
Query:  IEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFI
        ++  R    + T P +   + +++    +  ++ +   KG++ P+Y+ +G+++++V+ G +TA   L  +P V +NKK RE++PE+EDPD V+  AD+F 
Subjt:  IEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFI

Query:  NKSFLRKVAHIQNDTK--TLPDPVHPDPFTRPRNAETLKTAGVDP
        N+S+ RK+AH+Q   K   + DP+  D F     A TLK  GVDP
Subjt:  NKSFLRKVAHIQNDTK--TLPDPVHPDPFTRPRNAETLKTAGVDP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTGTTCAGAACCTCTCTCACAATGCAGAATAAAATGTGGAAATCAATGCTTGTTGGAACAAGAATCGAAGGGAAGCGTCGTCTCGCATCGTCCAATACAACCCC
AGCGGCCAATATTGAAAATGCTTCTTCTTCTTCTTCTTCTAATAAGGGCGGGTCTAGTGCGAGTGAGTACATGAAAGGCGAGTATGCCCCAATCTACATTGTGATGGGGA
TGGTGGCGGTGGCTGTGTCGATCGGAACCCACACGGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTGAACTTGAACAAGAAGAAGAGGGAAAGCATTCCGGAGGTGGAG
GACCCCGACACCGTCATCACTTCCGCCGACAAGTTTATCAATAAATCATTTCTGAGGAAGGTGGCTCACATTCAGAACGACACCAAGACGCTACCGGATCCCGTTCACCC
CGACCCGTTTACCAGGCCACGTAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGTCGTTGA
mRNA sequenceShow/hide mRNA sequence
GGTGAAATTGTGAAATCCAAATCCCACAACACATGGCTTTGTTCAGAACCTCTCTCACAATGCAGAATAAAATGTGGAAATCAATGCTTGTTGGAACAAGAATCGAAGGG
AAGCGTCGTCTCGCATCGTCCAATACAACCCCAGCGGCCAATATTGAAAATGCTTCTTCTTCTTCTTCTTCTAATAAGGGCGGGTCTAGTGCGAGTGAGTACATGAAAGG
CGAGTATGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTGTGTCGATCGGAACCCACACGGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTGAACTTGAACA
AGAAGAAGAGGGAAAGCATTCCGGAGGTGGAGGACCCCGACACCGTCATCACTTCCGCCGACAAGTTTATCAATAAATCATTTCTGAGGAAGGTGGCTCACATTCAGAAC
GACACCAAGACGCTACCGGATCCCGTTCACCCCGACCCGTTTACCAGGCCACGTAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGTCGTTGAACAACAAC
GACCACCTTTGTAGTGTCAACTCGTTTATGAAAGAAACATCATCGTCCCAACTATTTTATTTTATTTTTTTTATTTTTCTTTGTGATGTGTATATATATTTATATATAAT
GTGGGCCCTTCTGCTTCTTCTTTCCTCTTCACTTTCTAGTATTGGGTGAAGACTGAAGTTCAGTACTAGGGAATGTGGCCCCCTCATTTGTTTAATTAATTTTCTTTTTT
CTATAATAAACCCAATTTATTTGGAAAACCCAAACCCGGGCTTGGATTAATAGAAAGAATATCCTTGTTTTAAGG
Protein sequenceShow/hide protein sequence
MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVE
DPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR