CuGenDBv2

Gene ID	Clc06G01940
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	LITAF domain-containing protein
Genome location	ClcChr06:1803227..1809123
RNA-Seq Expression	Clc06G01940
Synteny	Clc06G01940
Gene Ontology terms	NA
InterPro domains	IPR006629 - LPS-induced tumour necrosis factor alpha factor IPR037519 - LITAF domain containing protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039847.1 zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa]

4.9e-44

56.25

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Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM
        MSKN EPVVG+PLY GNN YQAGQIP NAIFGDPQGVPI QTMYRDTPAPF CVYCGNSGLT +R                                   
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM

Query:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVQLFPVL
                                   SK+S AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV  F  L
Subjt:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVQLFPVL

XP_004140553.1 GSH-induced LITAF domain protein [Cucumis sativus]

3.8e-44

56.25

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Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM
        MSKN EPVVG+PLY GNN YQAGQIP NAIFGDP GVPI QTMYRDTPAPF CVYCGNSGLT +R                                   
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM

Query:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVQLFPVL
                                   SK+SSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV  F  L
Subjt:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVQLFPVL

XP_022954275.1 GSH-induced LITAF domain protein [Cucurbita moschata]

7.6e-45

57.65

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Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM
        MSKNDEPVVGIP Y GNNAYQAGQIP NAIFG PQGVPIHQTMYRDTPAP+ CVYCGNSGLT++R                                   
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM

Query:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV
                                   SK+S AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV
Subjt:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV

XP_022991744.1 GSH-induced LITAF domain protein [Cucurbita maxima]

1.7e-44

57.06

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Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM
        MSKNDEPVVGIP Y GNN+YQAGQIP NAIFG PQGVPIHQTMYRDTPAP+ CVYCGNSGLT++R                                   
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM

Query:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV
                                   SK+S AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV
Subjt:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV

XP_038906445.1 GSH-induced LITAF domain protein [Benincasa hispida]

8.9e-46

59.41

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Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM
        MSKNDEPVVGIPLYDGNN YQAGQIPSNAIFGDPQGVPI QTMYRDTPAPFYCVYCGNSGLT VR                                   
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM

Query:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV
                                   SK+SSAAVVGCM PF+LGVCFL PSMDCLWHKYHYCPSCKEKV
Subjt:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDG7 LITAF domain-containing protein

1.8e-44

56.25

Show/hide

Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM
        MSKN EPVVG+PLY GNN YQAGQIP NAIFGDP GVPI QTMYRDTPAPF CVYCGNSGLT +R                                   
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM

Query:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVQLFPVL
                                   SK+SSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV  F  L
Subjt:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVQLFPVL

A0A5D3DMB0 Zf-LITAF-like domain-containing protein

2.4e-44

56.25

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Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM
        MSKN EPVVG+PLY GNN YQAGQIP NAIFGDPQGVPI QTMYRDTPAPF CVYCGNSGLT +R                                   
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM

Query:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVQLFPVL
                                   SK+S AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV  F  L
Subjt:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVQLFPVL

A0A6J1D5M9 GSH-induced LITAF domain protein

4.0e-44

55.68

Show/hide

Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM
        MSKNDEPVVGIPLY G+NAYQAGQIPSNAI+GDPQGVPI QTM+RDTPAPFYC+YCGNSGLT+VR                                   
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM

Query:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVQLFPVL
                                   SK+SSAAVVGCM+PFMLGVCFL PSM+CLWHKYHYCP+CKEKV  F  L
Subjt:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVQLFPVL

A0A6J1GS01 GSH-induced LITAF domain protein

3.7e-45

57.65

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Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM
        MSKNDEPVVGIP Y GNNAYQAGQIP NAIFG PQGVPIHQTMYRDTPAP+ CVYCGNSGLT++R                                   
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM

Query:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV
                                   SK+S AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV
Subjt:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV

A0A6J1JVN9 GSH-induced LITAF domain protein

8.2e-45

57.06

Show/hide

Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM
        MSKNDEPVVGIP Y GNN+YQAGQIP NAIFG PQGVPIHQTMYRDTPAP+ CVYCGNSGLT++R                                   
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM

Query:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV
                                   SK+S AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV
Subjt:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKV

SwissProt top hits

e value

%identity

Alignment

Q94CD4 GSH-induced LITAF domain protein

3.4e-32

42.77

Show/hide

Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM
        M+K    V+G+P Y G N YQAG +P NAI+GDP G PI QT+YRDTPAPF C+YCGN+GLT +R                                   
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM

Query:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVQLF
                                   SK   AAVV CMMPFMLG CFLCPSMDCLW+K H+CP C  KV  F
Subjt:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVQLF

Arabidopsis top hits

e value

%identity

Alignment

AT5G13190.1 CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

2.4e-33

42.77

Show/hide

Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM
        M+K    V+G+P Y G N YQAG +P NAI+GDP G PI QT+YRDTPAPF C+YCGN+GLT +R                                   
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVRYGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRM

Query:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVQLF
                                   SK   AAVV CMMPFMLG CFLCPSMDCLW+K H+CP C  KV  F
Subjt:  LLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVQLF

Sequences

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CDS sequence

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ATGTACCATCTTATCGAAGGCCTTCTTCTCGTTTCCGTTTTCTCTCCCAAGTCCTCCAACAATTTTCATTTACTTCCATTCCAACAACTTTCTCAATCTCCGGCAGAGCA
GAAGAGATTACAAAGCTTACCGATAATGTCCAAGAACGACGAGCCGGTCGTCGGAATCCCACTTTACGACGGCAACAACGCCTATCAGGCTGGCCAGATCCCTTCCAACG
CCATTTTTGGCGATCCCCAGGGGGTTCCTATCCACCAAACCATGTACCGCGACACTCCTGCTCCCTTCTACTGTGTTTATTGTGGAAATTCCGGCCTCACCGCCGTCAGA
TACGGTTTTTGGAATCACTTGTACGCGATAAAATTTCTTTTTAGTGAGAGTTGCATAATAAATATATGTTCAAATGTTAGGATTGTATACACTCAGACAAGAATGTTGTT
GCTCATAAGCTCAAGACTTGTTGTAGCAGGGTACCGATGTTATTTATCATGTTTGGGCAGCAAAAGTTTGATAATATCAAAGTTAAGTTCAGCTGCTGTGGTTGGTTGTA
TGATGCCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAGAAGGTACAACTATTTCCGGTC
CTTGTTCATTCTGTCAGTTGCTTCTTCCAAGCTTCGCACTGCCTGCTTGATTTTGACGAGCTGCTATTTTCCCGTGTGGTTATTTTGGATTGTCTGCAGTCAGTACTTGC
GATAGTCTTGTGCTATTTTTGTGATGTTCTTGTTACACATAGGGATAGACAAAGTGTGGATATCGAAGCAGATGCAGGCAAAAAGAATTTCAAGTTGGATGCCGAGGTTT
CCAACGTGGAAGTGAAGGTTCGGCATGAGAAATTAGAGCCGGTCTTGATAGCCAAAGAGACTGCCTGCATGGATATGGCACAGATAGCAGCAGCTTTTAGAGATCCCTTC
ATGAAGTTGAAGTCTGCAGGCAAGTCATCCTTGGCTACAATACATGACTCTCCATTCCCATGTTGA

mRNA sequence

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Protein sequence

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MYHLIEGLLLVSVFSPKSSNNFHLLPFQQLSQSPAEQKRLQSLPIMSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTAVR
YGFWNHLYAIKFLFSESCIINICSNVRIVYTQTRMLLLISSRLVVAGYRCYLSCLGSKSLIISKLSSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVQLFPV
LVHSVSCFFQASHCLLDFDELLFSRVVILDCLQSVLAIVLCYFCDVLVTHRDRQSVDIEADAGKKNFKLDAEVSNVEVKVRHEKLEPVLIAKETACMDMAQIAAAFRDPF
MKLKSAGKSSLATIHDSPFPC

Clc06G01940 (gene) of Watermelon (cordophanus) v2 genome