; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G02055 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G02055
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNase H domain-containing protein
Genome locationClcChr06:1955785..1957467
RNA-Seq ExpressionClc06G02055
SyntenyClc06G02055
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]6.5e-1028.12Show/hide
Query:  MRGRWSPLDYWENLKRVSSRQELDCRMIIMWSLWNMRNRVRFRKTS---PSLDR----------------------------------------IGWGLI
        +R  W+  D W  L  + S +E+   M+I W +W  RNR  FR  +     LDR                                        + W   
Subjt:  MRGRWSPLDYWENLKRVSSRQELDCRMIIMWSLWNMRNRVRFRKTS---PSLDR----------------------------------------IGWGLI

Query:  HSPPLMALLLNVDAAWSDIKGKGGYGWIVRDHEGRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNRE
         +PP     LN DA+WS+ +  GG GWI+ D  G  V  G   I +   ++ LE   I+ GL+ +  +   PI    +ESD++EVIRL+ +E
Subjt:  HSPPLMALLLNVDAAWSDIKGKGGYGWIVRDHEGRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNRE

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.7e-0830.12Show/hide
Query:  MIIMWSLWNMRNRVRFRKTSP-------SLDRI----------------------------GWGLIHSPPLM-ALLLNVDAAWSDIKGKGGYGWIVRDHE
        MII W +W MRN+  F+   P       ++DR                               G    PP   +  LN +AAW      GG GWI+RD +
Subjt:  MIIMWSLWNMRNRVRFRKTSP-------SLDRI----------------------------GWGLIHSPPLM-ALLLNVDAAWSDIKGKGGYGWIVRDHE

Query:  GRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNRELVSFAEI
        G  +   C+ I     ++ LE  AI  GL+ + +E   PI    +ESD+LE I LL+R+     EI
Subjt:  GRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNRELVSFAEI

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]6.5e-1029.57Show/hide
Query:  RGRWSPLDYWENLKRVSSRQELDCRMIIMWSLWNMRNRVRFR-------------------------------KTSPSLDRIG------WGLIHSPPLMA
        R  W+  +YWE L   +  +E    MII   +W MRN+  F+                               K    + RIG      W     P   +
Subjt:  RGRWSPLDYWENLKRVSSRQELDCRMIIMWSLWNMRNRVRFR-------------------------------KTSPSLDRIG------WGLIHSPPLMA

Query:  LLLNVDAAWSDIKGKGGYGWIVRDHEGRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNREL
          LN DAAW       G GWI+RD +G  +  GC+ I     ++ LE  AI  GL+ + +E   PI    +ESD+LE I LL+R +
Subjt:  LLLNVDAAWSDIKGKGGYGWIVRDHEGRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNREL

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]6.5e-1029.57Show/hide
Query:  RGRWSPLDYWENLKRVSSRQELDCRMIIMWSLWNMRNRVRFR-------------------------------KTSPSLDRIG------WGLIHSPPLMA
        R  W+  +YWE L   +  +E    MII   +W MRN+  F+                               K    + RIG      W     P   +
Subjt:  RGRWSPLDYWENLKRVSSRQELDCRMIIMWSLWNMRNRVRFR-------------------------------KTSPSLDRIG------WGLIHSPPLMA

Query:  LLLNVDAAWSDIKGKGGYGWIVRDHEGRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNREL
          LN DAAW       G GWI+RD +G  +  GC+ I     ++ LE  AI  GL+ + +E   PI    +ESD+LE I LL+R +
Subjt:  LLLNVDAAWSDIKGKGGYGWIVRDHEGRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNREL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.5e-1435.2Show/hide
Query:  SSRQELDCRMIIMWSLWNMRNRVRFR------------------------KTSPSL------DRIGWGLIHSPPLMALLLNVDAAWSDIKGKGGYGWIVR
        +S ++LD  +I  W +WN RN V FR                        +TS S+      +++ W     PP+    LN DA+WSD   +GG GWI+R
Subjt:  SSRQELDCRMIIMWSLWNMRNRVRFR------------------------KTSPSL------DRIGWGLIHSPPLMALLLNVDAAWSDIKGKGGYGWIVR

Query:  DHEGRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNRELVSFAEIG-VIENILLL
          +G  V  G +F+   + V  LEA AIL GL+ L    LG + PL +E+D+ EV  LLNR+     + G V+E IL L
Subjt:  DHEGRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNRELVSFAEIG-VIENILLL

TrEMBL top hitse value%identityAlignment
A0A6J1CQG0 uncharacterized protein LOC1110132163.1e-1028.12Show/hide
Query:  MRGRWSPLDYWENLKRVSSRQELDCRMIIMWSLWNMRNRVRFRKTS---PSLDR----------------------------------------IGWGLI
        +R  W+  D W  L  + S +E+   M+I W +W  RNR  FR  +     LDR                                        + W   
Subjt:  MRGRWSPLDYWENLKRVSSRQELDCRMIIMWSLWNMRNRVRFRKTS---PSLDR----------------------------------------IGWGLI

Query:  HSPPLMALLLNVDAAWSDIKGKGGYGWIVRDHEGRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNRE
         +PP     LN DA+WS+ +  GG GWI+ D  G  V  G   I +   ++ LE   I+ GL+ +  +   PI    +ESD++EVIRL+ +E
Subjt:  HSPPLMALLLNVDAAWSDIKGKGGYGWIVRDHEGRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNRE

A0A6J1D4B6 uncharacterized protein LOC1110171813.8e-0827.03Show/hide
Query:  LDYWENLKRVSSRQELDCRMIIMWSLWNMRNRV------------------------------RFRKTSPSLDR-IGWGLIHSPPLMAL-LLNVDAAWSD
        +DY++ + R S + +    ++++WS+W  RN++                                     +L R +GW    +PP   L  LNVDA W D
Subjt:  LDYWENLKRVSSRQELDCRMIIMWSLWNMRNRV------------------------------RFRKTSPSLDR-IGWGLIHSPPLMAL-LLNVDAAWSD

Query:  IKGKGGYGWIVRDHEGRAVFGGC-KFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNRELVSFAEIGVI
            GG GWIVRD EGR +   C K +S        ++  + AG+K            +E+ESD LEV+ ++N+  +   E+ +I
Subjt:  IKGKGGYGWIVRDHEGRAVFGGC-KFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNRELVSFAEIGVI

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X13.1e-1029.57Show/hide
Query:  RGRWSPLDYWENLKRVSSRQELDCRMIIMWSLWNMRNRVRFR-------------------------------KTSPSLDRIG------WGLIHSPPLMA
        R  W+  +YWE L   +  +E    MII   +W MRN+  F+                               K    + RIG      W     P   +
Subjt:  RGRWSPLDYWENLKRVSSRQELDCRMIIMWSLWNMRNRVRFR-------------------------------KTSPSLDRIG------WGLIHSPPLMA

Query:  LLLNVDAAWSDIKGKGGYGWIVRDHEGRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNREL
          LN DAAW       G GWI+RD +G  +  GC+ I     ++ LE  AI  GL+ + +E   PI    +ESD+LE I LL+R +
Subjt:  LLLNVDAAWSDIKGKGGYGWIVRDHEGRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNREL

A0A6J1DNV9 uncharacterized protein LOC1110224037.2e-1535.2Show/hide
Query:  SSRQELDCRMIIMWSLWNMRNRVRFR------------------------KTSPSL------DRIGWGLIHSPPLMALLLNVDAAWSDIKGKGGYGWIVR
        +S ++LD  +I  W +WN RN V FR                        +TS S+      +++ W     PP+    LN DA+WSD   +GG GWI+R
Subjt:  SSRQELDCRMIIMWSLWNMRNRVRFR------------------------KTSPSL------DRIGWGLIHSPPLMALLLNVDAAWSDIKGKGGYGWIVR

Query:  DHEGRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNRELVSFAEIG-VIENILLL
          +G  V  G +F+   + V  LEA AIL GL+ L    LG + PL +E+D+ EV  LLNR+     + G V+E IL L
Subjt:  DHEGRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNRELVSFAEIG-VIENILLL

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X23.1e-1029.57Show/hide
Query:  RGRWSPLDYWENLKRVSSRQELDCRMIIMWSLWNMRNRVRFR-------------------------------KTSPSLDRIG------WGLIHSPPLMA
        R  W+  +YWE L   +  +E    MII   +W MRN+  F+                               K    + RIG      W     P   +
Subjt:  RGRWSPLDYWENLKRVSSRQELDCRMIIMWSLWNMRNRVRFR-------------------------------KTSPSLDRIG------WGLIHSPPLMA

Query:  LLLNVDAAWSDIKGKGGYGWIVRDHEGRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNREL
          LN DAAW       G GWI+RD +G  +  GC+ I     ++ LE  AI  GL+ + +E   PI    +ESD+LE I LL+R +
Subjt:  LLLNVDAAWSDIKGKGGYGWIVRDHEGRAVFGGCKFISKGSYVSRLEAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNREL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGCAGGTGGTCCCCGTTGGATTATTGGGAGAACCTCAAGAGGGTGAGTTCCAGGCAGGAGCTTGATTGCAGGATGATCATTATGTGGAGTCTTTGGAACATGAG
GAACAGGGTTCGGTTCAGGAAGACCTCACCCTCCCTCGATCGTATTGGGTGGGGATTGATTCATTCCCCCCCTTTGATGGCGTTGTTGCTAAATGTGGATGCTGCTTGGT
CCGACATCAAAGGGAAGGGAGGCTATGGGTGGATCGTTCGAGACCACGAGGGTCGTGCTGTTTTTGGTGGTTGCAAGTTCATTTCTAAAGGCAGTTATGTGAGCCGGCTG
GAAGCTGAGGCCATCCTTGCGGGGTTGAAATTGCTGGTTGAGGAGTGCTTAGGTCCTATTCCACCTTTGGAGGTGGAGTCTGATGCTTTGGAGGTTATCAGGCTGCTCAA
CAGGGAATTGGTTTCCTTTGCTGAGATCGGTGTTATTGAGAACATTTTGTTATTGAACTTTGAATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGCAGGTGGTCCCCGTTGGATTATTGGGAGAACCTCAAGAGGGTGAGTTCCAGGCAGGAGCTTGATTGCAGGATGATCATTATGTGGAGTCTTTGGAACATGAG
GAACAGGGTTCGGTTCAGGAAGACCTCACCCTCCCTCGATCGTATTGGGTGGGGATTGATTCATTCCCCCCCTTTGATGGCGTTGTTGCTAAATGTGGATGCTGCTTGGT
CCGACATCAAAGGGAAGGGAGGCTATGGGTGGATCGTTCGAGACCACGAGGGTCGTGCTGTTTTTGGTGGTTGCAAGTTCATTTCTAAAGGCAGTTATGTGAGCCGGCTG
GAAGCTGAGGCCATCCTTGCGGGGTTGAAATTGCTGGTTGAGGAGTGCTTAGGTCCTATTCCACCTTTGGAGGTGGAGTCTGATGCTTTGGAGGTTATCAGGCTGCTCAA
CAGGGAATTGGTTTCCTTTGCTGAGATCGGTGTTATTGAGAACATTTTGTTATTGAACTTTGAATTTTGA
Protein sequenceShow/hide protein sequence
MRGRWSPLDYWENLKRVSSRQELDCRMIIMWSLWNMRNRVRFRKTSPSLDRIGWGLIHSPPLMALLLNVDAAWSDIKGKGGYGWIVRDHEGRAVFGGCKFISKGSYVSRL
EAEAILAGLKLLVEECLGPIPPLEVESDALEVIRLLNRELVSFAEIGVIENILLLNFEF