; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G03180 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G03180
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationClcChr06:3298838..3300181
RNA-Seq ExpressionClc06G03180
SyntenyClc06G03180
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646781.1 hypothetical protein Csa_005116, partial [Cucumis sativus]9.9e-7959.06Show/hide
Query:  SLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGL-QHSWFYLTAIFPLALDLQDSGYTSLTFTVPYPE
        S    V+DM+ LI+  +TLG+VD MAD  FSP+ FCIMADS  +I +A G+QLWPPFFD +    + Q  WF LT +FPLA++L +SGYTSLTF++   E
Subjt:  SLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGL-QHSWFYLTAIFPLALDLQDSGYTSLTFTVPYPE

Query:  R-----AQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPN
        R     AQ KF+GPN LLR+++F +    RP+ I + DLS FV+M+S+ FSNII+EYHMFDYV V ITS RV+FSYAI+QET ++P+DG+C+IGG+RAPN
Subjt:  R-----AQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPN

Query:  QIQFITNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCNV
        Q+QFI  +S P+AFYH ASQ+KR+W FK  +S KG+ITAPLGL GRLV+FFC+V
Subjt:  QIQFITNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCNV

XP_004146827.2 uncharacterized protein LOC101206630 isoform X1 [Cucumis sativus]1.1e-8863.2Show/hide
Query:  SLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGLQHSWFYLTAIFPLALDLQDSGYTSLTFTVPY-PE
        S NF+VN+MR L++A  TLG+ D   D TFSPEMFC+MADS  +I +AIGLQLWPPFFDHY C  L++SWF+ + IFPLA  L+D GYTS +F++   P 
Subjt:  SLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGLQHSWFYLTAIFPLALDLQDSGYTSLTFTVPY-PE

Query:  RAQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQFI
         AQ++FQGP  LL E+   + F H P+ I++FDLS FV+M+SQ FSN+I++YHMFD VHVTITS RV FSY+ MQET LSPQ+G+CIIGG+RAP++++F+
Subjt:  RAQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQFI

Query:  TNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCNVF
          L P E F HIASQTKRVWFFK C+SN+G+ITAPLGLN RLVAFFC+VF
Subjt:  TNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCNVF

XP_008459734.1 PREDICTED: uncharacterized protein LOC103498776 [Cucumis melo]9.9e-9567.73Show/hide
Query:  MSLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGLQHSWFYLTAIFPLALDLQDSGYTSLTFTV-PYP
        MS NFVVN+M+ LI+A  TLG+ D++AD TFSPEMFC+M DS  +I + IGLQLWPPFFDHY C+ LQ+SWF+   IFPLA DLQDSGYTS +F++ P P
Subjt:  MSLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGLQHSWFYLTAIFPLALDLQDSGYTSLTFTV-PYP

Query:  ERAQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQF
        + AQ+KFQGPN LL E +FE+ +SH P+ I +FDLS FV+M+SQ FSN+I++YHMFD VHVTITS RV FSY+IMQET L+ Q+G+CIIGGI+APNQ+QF
Subjt:  ERAQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQF

Query:  ITNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCNVF
        I  L P E F HIASQTKRVWFFK C+SNKG+ITAPLGLN RLVA F +VF
Subjt:  ITNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCNVF

XP_011652354.1 uncharacterized protein LOC101206630 isoform X2 [Cucumis sativus]4.9e-8662.8Show/hide
Query:  SLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGLQHSWFYLTAIFPLALDLQDSGYTSLTFTVPY-PE
        S NF+VN+MR L++A  TLG+ D   D TFSPEMFC+MADS  +I +AIGLQLWPPFFDHY C  L++SWF+ + IFPLA  L+D GYTS +F++   P 
Subjt:  SLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGLQHSWFYLTAIFPLALDLQDSGYTSLTFTVPY-PE

Query:  RAQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQFI
         AQ++FQGP  LL E+   + F H P+ I++FDLS FV+M+SQ FSN+I++YHMFD VHVTITS RV FSY+ MQET LSPQ   CIIGG+RAP++++F+
Subjt:  RAQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQFI

Query:  TNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCNVF
          L P E F HIASQTKRVWFFK C+SN+G+ITAPLGLN RLVAFFC+VF
Subjt:  TNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCNVF

XP_038876014.1 uncharacterized protein LOC120068348 [Benincasa hispida]5.2e-10472.73Show/hide
Query:  MSLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVC-TGLQHSWFYLTAIFPLALDLQDSGYTSLTFTV--P
        M  NFVVNDMR LINAA  +GMVD MADVTFSPEM CIMADSY +I AAIG+QLWPPFFDHY C   LQ SWFYLT IFPL L+L DSGYTS TF++  P
Subjt:  MSLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVC-TGLQHSWFYLTAIFPLALDLQDSGYTSLTFTV--P

Query:  YPERAQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQI
        Y ERA+LKF+GPN LL EI+F++ +SH P+Y+ EFDLS FV+++SQ FS+I+ EYHMFDYVHVTITSTRVTFSYAI+QET L+PQDG+C+IGG+RAPNQI
Subjt:  YPERAQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQI

Query:  QFITNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCNVF
        QFI  L+P E FYHIA + KR+WFFK+ +S KGVITAP+GLNGRLVAFFC+VF
Subjt:  QFITNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCNVF

TrEMBL top hitse value%identityAlignment
A0A0A0KFM5 Uncharacterized protein1.2e-7758.27Show/hide
Query:  SLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGL-QHSWFYLTAIFPLALDLQDSGYTSLTFTVPYPE
        S    V+DM+ LI++ +TLG+VD MAD  FSP+ FCIMADS  +I +A G+QLWPPFFD +    + Q  WF LT +F LA++L +SGYTSLTF++   E
Subjt:  SLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGL-QHSWFYLTAIFPLALDLQDSGYTSLTFTVPYPE

Query:  R-----AQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPN
        R     AQ KF+GPN LLR+++F +    RP+ I + DLS FV+M+S+ FSNII+EYHMFDYV V ITS RV+FSYAI+QET ++P+DG+C+IGG+RAPN
Subjt:  R-----AQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPN

Query:  QIQFITNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCNV
        Q+QFI  +S P AF+H ASQ+KR+W FK  +S KG+ITAPLGL GRLV+FFC+V
Subjt:  QIQFITNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCNV

A0A0A0LIF2 Uncharacterized protein5.1e-8963.2Show/hide
Query:  SLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGLQHSWFYLTAIFPLALDLQDSGYTSLTFTVPY-PE
        S NF+VN+MR L++A  TLG+ D   D TFSPEMFC+MADS  +I +AIGLQLWPPFFDHY C  L++SWF+ + IFPLA  L+D GYTS +F++   P 
Subjt:  SLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGLQHSWFYLTAIFPLALDLQDSGYTSLTFTVPY-PE

Query:  RAQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQFI
         AQ++FQGP  LL E+   + F H P+ I++FDLS FV+M+SQ FSN+I++YHMFD VHVTITS RV FSY+ MQET LSPQ+G+CIIGG+RAP++++F+
Subjt:  RAQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQFI

Query:  TNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCNVF
          L P E F HIASQTKRVWFFK C+SN+G+ITAPLGLN RLVAFFC+VF
Subjt:  TNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCNVF

A0A1S3CBB9 uncharacterized protein LOC1034987764.8e-9567.73Show/hide
Query:  MSLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGLQHSWFYLTAIFPLALDLQDSGYTSLTFTV-PYP
        MS NFVVN+M+ LI+A  TLG+ D++AD TFSPEMFC+M DS  +I + IGLQLWPPFFDHY C+ LQ+SWF+   IFPLA DLQDSGYTS +F++ P P
Subjt:  MSLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGLQHSWFYLTAIFPLALDLQDSGYTSLTFTV-PYP

Query:  ERAQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQF
        + AQ+KFQGPN LL E +FE+ +SH P+ I +FDLS FV+M+SQ FSN+I++YHMFD VHVTITS RV FSY+IMQET L+ Q+G+CIIGGI+APNQ+QF
Subjt:  ERAQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQF

Query:  ITNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCNVF
        I  L P E F HIASQTKRVWFFK C+SNKG+ITAPLGLN RLVA F +VF
Subjt:  ITNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCNVF

A0A5D3DMK7 Uncharacterized protein1.5e-7759.6Show/hide
Query:  SLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGL-QHSWFYLTAIFPLALDLQDSGYTSLTFTVP--Y
        S    VNDM+ LI+  +TLG+VD MAD  FSP+MFCIMADS  +I +A G++L PPFFD +    + Q  WF LT +FPLA+ L +SGYTS TF++    
Subjt:  SLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGL-QHSWFYLTAIFPLALDLQDSGYTSLTFTVP--Y

Query:  PERAQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQ
           AQ +F+GPN LLRE++F +    RP+ I E DLS FVTM+SQ FSNII+EYHMFDYV V IT+ RV+FSYAI+QET ++PQDG+CIIGGIR PN++Q
Subjt:  PERAQLKFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQ

Query:  FITNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCN
        FI  +S P+AFYH ASQ+KR+W FK  +S KG+ITAPLGL+GRLV+FFC+
Subjt:  FITNLSPPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCN

A0A6J1L2R2 uncharacterized protein LOC1114993082.5e-7556.97Show/hide
Query:  FVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGLQHSWFYLTAIFPLALDLQDSGYTSLTFTVPYPERAQL
        FV+N M+ L++AA  +   D MAD+ FS EMF IMADSYPA+   I L LWP FFD YVC  L  SW ++  +FPL +D+++SG+ SL+FTV YPE A+L
Subjt:  FVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGLQHSWFYLTAIFPLALDLQDSGYTSLTFTVPYPERAQL

Query:  KFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQFITNLS
        KFQ PN L  E++FE+  S  P+ + +FD S FV+++S+ F NI+ EYHMFDYVHVT+TSTRV FSYAIM ET L+ +DGEC+IGGI APN ++FI  LS
Subjt:  KFQGPNDLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQFITNLS

Query:  PPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCN
        P EAFY +A ++KRVW +KS  + KGVI  PLGL  R VA+F N
Subjt:  PPEAFYHIASQTKRVWFFKSCSSNKGVITAPLGLNGRLVAFFCN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTAAATTTCGTCGTCAACGATATGCGCGCCCTGATAAACGCGGCCATGACATTGGGCATGGTGGATAGAATGGCGGATGTAACATTTTCACCGGAAATGTTTTG
CATAATGGCCGATTCATATCCTGCCATTCTCGCCGCCATCGGCCTTCAACTCTGGCCTCCATTCTTTGACCATTACGTCTGCACTGGGCTTCAACATTCCTGGTTTTACC
TTACCGCCATTTTCCCTCTTGCCCTAGACTTACAAGATTCTGGTTACACTTCTTTGACCTTCACTGTCCCTTACCCCGAACGTGCCCAACTCAAATTCCAAGGCCCAAAT
GACCTTCTTCGCGAAATTGATTTCGAAATGTGTTTTTCCCATCGCCCCATGTACATCAACGAATTTGATCTCTCTTTTTTCGTTACCATGGAGTCTCAACATTTCTCCAA
CATTATCGCTGAATATCATATGTTTGATTACGTTCATGTTACTATAACGAGCACACGAGTGACATTCTCTTATGCAATTATGCAAGAGACAAGTCTTAGCCCACAGGATG
GAGAGTGCATAATTGGAGGTATTAGAGCACCAAATCAAATTCAATTCATAACCAATTTGAGTCCACCAGAAGCTTTCTATCATATTGCAAGTCAAACGAAGAGGGTATGG
TTCTTCAAGTCATGTAGTTCCAACAAAGGTGTAATTACTGCCCCTCTTGGATTGAATGGTCGACTTGTCGCTTTTTTCTGTAATGTGTTTAGAACAGATGATCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTAAATTTCGTCGTCAACGATATGCGCGCCCTGATAAACGCGGCCATGACATTGGGCATGGTGGATAGAATGGCGGATGTAACATTTTCACCGGAAATGTTTTG
CATAATGGCCGATTCATATCCTGCCATTCTCGCCGCCATCGGCCTTCAACTCTGGCCTCCATTCTTTGACCATTACGTCTGCACTGGGCTTCAACATTCCTGGTTTTACC
TTACCGCCATTTTCCCTCTTGCCCTAGACTTACAAGATTCTGGTTACACTTCTTTGACCTTCACTGTCCCTTACCCCGAACGTGCCCAACTCAAATTCCAAGGCCCAAAT
GACCTTCTTCGCGAAATTGATTTCGAAATGTGTTTTTCCCATCGCCCCATGTACATCAACGAATTTGATCTCTCTTTTTTCGTTACCATGGAGTCTCAACATTTCTCCAA
CATTATCGCTGAATATCATATGTTTGATTACGTTCATGTTACTATAACGAGCACACGAGTGACATTCTCTTATGCAATTATGCAAGAGACAAGTCTTAGCCCACAGGATG
GAGAGTGCATAATTGGAGGTATTAGAGCACCAAATCAAATTCAATTCATAACCAATTTGAGTCCACCAGAAGCTTTCTATCATATTGCAAGTCAAACGAAGAGGGTATGG
TTCTTCAAGTCATGTAGTTCCAACAAAGGTGTAATTACTGCCCCTCTTGGATTGAATGGTCGACTTGTCGCTTTTTTCTGTAATGTGTTTAGAACAGATGATCATTAA
Protein sequenceShow/hide protein sequence
MSLNFVVNDMRALINAAMTLGMVDRMADVTFSPEMFCIMADSYPAILAAIGLQLWPPFFDHYVCTGLQHSWFYLTAIFPLALDLQDSGYTSLTFTVPYPERAQLKFQGPN
DLLREIDFEMCFSHRPMYINEFDLSFFVTMESQHFSNIIAEYHMFDYVHVTITSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQFITNLSPPEAFYHIASQTKRVW
FFKSCSSNKGVITAPLGLNGRLVAFFCNVFRTDDH