; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G03190 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G03190
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationClcChr06:3302011..3303799
RNA-Seq ExpressionClc06G03190
SyntenyClc06G03190
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039744.1 hypothetical protein E6C27_scaffold122G00040 [Cucumis melo var. makuwa]2.1e-8463.1Show/hide
Query:  SFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNEA-QRSWFFLTNIFPLALDLQDSGYTSLTFSIP--Y
        SF   VNDM  LI+   TLG+VD MAD  FSP+M CIMADS++SIH+A G++L PPFFD ++ +E  Q  WF LT++FPLA+ L +SGYTS TFSI    
Subjt:  SFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNEA-QRSWFFLTNIFPLALDLQDSGYTSLTFSIP--Y

Query:  PERAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQ
           A+ +F+GPNGLLRE++F L     PL I E DLS FV+MDSQ+FS+II+EYHMFDYVQV +T+ RV+FSYAI+QET ++PQDG+CIIGGIR PN++Q
Subjt:  PERAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQ

Query:  FMINLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFFCTSA
        F+I +S P+AFYH ASQ+KRIW FK  NSTKG+ITAPLGL+GRLVSFFC S+
Subjt:  FMINLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFFCTSA

XP_004146827.2 uncharacterized protein LOC101206630 isoform X1 [Cucumis sativus]1.7e-9165.18Show/hide
Query:  SFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNEAQRSWFFLTNIFPLALDLQDSGYTSLTFSIPY-PE
        SFNF+VN+M  L++A  TLG+ D   D TFSPEM C+MADSN+SIH+AIGLQLWPPFFDHYFC + + SWFF + IFPLA  L+D GYTS +FSI   P 
Subjt:  SFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNEAQRSWFFLTNIFPLALDLQDSGYTSLTFSIPY-PE

Query:  RAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQFM
         A+++FQGP  LL E+   L + H PL I +FDLS+FVSMDSQQFS++I++YHMFD V VT+TS RV FSY+ MQET LSPQ+G+CIIGG+RAP++++F+
Subjt:  RAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQFM

Query:  INLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFFC
        I L P E F HIASQTKR+WFFK CNS +GLITAPLGLN RLV+FFC
Subjt:  INLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFFC

XP_008459734.1 PREDICTED: uncharacterized protein LOC103498776 [Cucumis melo]4.6e-10071.26Show/hide
Query:  MSFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNEAQRSWFFLTNIFPLALDLQDSGYTSLTFSI-PYP
        MSFNFVVN+M  LI+A  TLG+ DQ+AD TFSPEM C+M DSN+SIH+ IGLQLWPPFFDHYFC+E Q SWFF   IFPLA DLQDSGYTS +FSI P P
Subjt:  MSFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNEAQRSWFFLTNIFPLALDLQDSGYTSLTFSI-PYP

Query:  ERAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQF
        + A++KFQGPNGLL E +FEL YSH PL I +FDLS+FVSMDSQ+FS++I++YHMFD V VT+TS RV FSY+IMQET L+ Q+G+CIIGGI+APNQ+QF
Subjt:  ERAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQF

Query:  MINLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFF
        ++ L P E F HIASQTKR+WFFK CNS KGLITAPLGLN RLV+ F
Subjt:  MINLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFF

XP_011652354.1 uncharacterized protein LOC101206630 isoform X2 [Cucumis sativus]1.1e-8864.78Show/hide
Query:  SFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNEAQRSWFFLTNIFPLALDLQDSGYTSLTFSIPY-PE
        SFNF+VN+M  L++A  TLG+ D   D TFSPEM C+MADSN+SIH+AIGLQLWPPFFDHYFC + + SWFF + IFPLA  L+D GYTS +FSI   P 
Subjt:  SFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNEAQRSWFFLTNIFPLALDLQDSGYTSLTFSIPY-PE

Query:  RAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQFM
         A+++FQGP  LL E+   L + H PL I +FDLS+FVSMDSQQFS++I++YHMFD V VT+TS RV FSY+ MQET LSPQ   CIIGG+RAP++++F+
Subjt:  RAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQFM

Query:  INLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFFC
        I L P E F HIASQTKR+WFFK CNS +GLITAPLGLN RLV+FFC
Subjt:  INLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFFC

XP_038876014.1 uncharacterized protein LOC120068348 [Benincasa hispida]1.3e-10776Show/hide
Query:  MSFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFC-NEAQRSWFFLTNIFPLALDLQDSGYTSLTFSI--P
        M FNFVVNDM  LINAAT +GMVD MAD TFSPEMLCIMADS +SI AAIG+QLWPPFFDHYFC N  QRSWF+LT IFPL L+L DSGYTS TFSI  P
Subjt:  MSFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFC-NEAQRSWFFLTNIFPLALDLQDSGYTSLTFSI--P

Query:  YPERAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQI
        Y ERA+LKF+GPNGLL EI+F+L YSH PL++ EFDLS+FVS+DSQ+FS I+ EYHMFDYV VT+TSTRVTFSYAI+QET L+PQDG+C+IGG+RAPNQI
Subjt:  YPERAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQI

Query:  QFMINLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFFC
        QF+I L+P E FYHIA + KRIWFFK  NSTKG+ITAP+GLNGRLV+FFC
Subjt:  QFMINLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFFC

TrEMBL top hitse value%identityAlignment
A0A0A0KA18 Uncharacterized protein2.1e-7960.24Show/hide
Query:  SFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFC-NEAQRSWFFLTNIFPLALDLQDSGYTSLTFSIP--Y
        SF   V+DM  LI++  TLG+VD MAD  FSP+M CI+ADS++S+ +A GLQLWPPFFD ++  N  Q  WF LT++FPLAL+L +SG TSLTFSI    
Subjt:  SFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFC-NEAQRSWFFLTNIFPLALDLQDSGYTSLTFSIP--Y

Query:  PERAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQ
           A+ KF+GPNGLLRE++F L     PL I + DLS FV+MDSQ+FS+II++Y+MFDYV+V +TS RV+FS + +QET++S +DG CI+GG+RAP Q+Q
Subjt:  PERAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQ

Query:  FMINLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFFC
        F+I +S P AF+H ASQ+KRIW FK  NSTKG+ITAPLGL GRLVSFFC
Subjt:  FMINLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFFC

A0A0A0KFM5 Uncharacterized protein5.5e-8361.9Show/hide
Query:  SFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNE-AQRSWFFLTNIFPLALDLQDSGYTSLTFSIPYPE
        SF   V+DM  LI++  TLG+VD MAD  FSP+  CIMADS+ SIH+A G+QLWPPFFD ++ ++  Q  WF LT++F LA++L +SGYTSLTFSI   E
Subjt:  SFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNE-AQRSWFFLTNIFPLALDLQDSGYTSLTFSIPYPE

Query:  R-----AELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPN
        R     A+ KF+GPNGLLR+++F L     PL I + DLS FVSMDS++FS+II+EYHMFDYV+V +TS RV+FSYAI+QET ++P+DG+C+IGG+RAPN
Subjt:  R-----AELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPN

Query:  QIQFMINLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFFC
        Q+QF+I +S P AF+H ASQ+KRIW FK  NSTKG+ITAPLGL GRLVSFFC
Subjt:  QIQFMINLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFFC

A0A0A0LIF2 Uncharacterized protein8.4e-9265.18Show/hide
Query:  SFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNEAQRSWFFLTNIFPLALDLQDSGYTSLTFSIPY-PE
        SFNF+VN+M  L++A  TLG+ D   D TFSPEM C+MADSN+SIH+AIGLQLWPPFFDHYFC + + SWFF + IFPLA  L+D GYTS +FSI   P 
Subjt:  SFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNEAQRSWFFLTNIFPLALDLQDSGYTSLTFSIPY-PE

Query:  RAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQFM
         A+++FQGP  LL E+   L + H PL I +FDLS+FVSMDSQQFS++I++YHMFD V VT+TS RV FSY+ MQET LSPQ+G+CIIGG+RAP++++F+
Subjt:  RAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQFM

Query:  INLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFFC
        I L P E F HIASQTKR+WFFK CNS +GLITAPLGLN RLV+FFC
Subjt:  INLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFFC

A0A1S3CBB9 uncharacterized protein LOC1034987762.2e-10071.26Show/hide
Query:  MSFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNEAQRSWFFLTNIFPLALDLQDSGYTSLTFSI-PYP
        MSFNFVVN+M  LI+A  TLG+ DQ+AD TFSPEM C+M DSN+SIH+ IGLQLWPPFFDHYFC+E Q SWFF   IFPLA DLQDSGYTS +FSI P P
Subjt:  MSFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNEAQRSWFFLTNIFPLALDLQDSGYTSLTFSI-PYP

Query:  ERAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQF
        + A++KFQGPNGLL E +FEL YSH PL I +FDLS+FVSMDSQ+FS++I++YHMFD V VT+TS RV FSY+IMQET L+ Q+G+CIIGGI+APNQ+QF
Subjt:  ERAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQF

Query:  MINLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFF
        ++ L P E F HIASQTKR+WFFK CNS KGLITAPLGLN RLV+ F
Subjt:  MINLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFF

A0A5D3DMK7 Uncharacterized protein1.0e-8463.1Show/hide
Query:  SFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNEA-QRSWFFLTNIFPLALDLQDSGYTSLTFSIP--Y
        SF   VNDM  LI+   TLG+VD MAD  FSP+M CIMADS++SIH+A G++L PPFFD ++ +E  Q  WF LT++FPLA+ L +SGYTS TFSI    
Subjt:  SFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNEA-QRSWFFLTNIFPLALDLQDSGYTSLTFSIP--Y

Query:  PERAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQ
           A+ +F+GPNGLLRE++F L     PL I E DLS FV+MDSQ+FS+II+EYHMFDYVQV +T+ RV+FSYAI+QET ++PQDG+CIIGGIR PN++Q
Subjt:  PERAELKFQGPNGLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQ

Query:  FMINLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFFCTSA
        F+I +S P+AFYH ASQ+KRIW FK  NSTKG+ITAPLGL+GRLVSFFC S+
Subjt:  FMINLSPPEAFYHIASQTKRIWFFKTCNSTKGLITAPLGLNGRLVSFFCTSA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTCAATTTCGTCGTCAACGATATGCACGCCCTCATAAACGCGGCCACCACATTGGGGATGGTGGATCAAATGGCGGATACAACATTCTCGCCGGAAATGCTTTG
CATAATGGCGGATTCAAATATTTCCATTCACGCCGCCATCGGCCTTCAACTCTGGCCTCCATTCTTTGACCATTACTTCTGCAATGAGGCTCAGCGTTCTTGGTTTTTCC
TCACCAACATTTTCCCTCTTGCCCTAGATTTACAAGATTCTGGTTACACTTCTTTGACCTTCTCTATCCCTTACCCCGAACGTGCCGAACTCAAATTCCAAGGCCCAAAT
GGCCTTCTTCGCGAAATTGATTTCGAATTGGCTTATTCCCATGATCCTTTGTTCATCAGCGAATTTGATCTCTCCATTTTTGTTTCCATGGATTCTCAACAATTCTCCCA
CATTATCGCTGAATATCATATGTTTGATTACGTTCAAGTTACTGTAACAAGCACACGAGTGACATTCTCTTATGCAATTATGCAAGAGACAAGTCTTAGCCCACAGGATG
GAGAATGCATAATTGGAGGTATTAGAGCACCAAATCAAATTCAATTCATGATCAATTTGAGTCCACCAGAAGCCTTCTATCATATCGCAAGCCAAACGAAGAGGATATGG
TTCTTCAAAACTTGTAATTCCACCAAAGGTTTAATTACTGCCCCTCTTGGATTGAATGGTCGACTTGTTTCTTTTTTCTGTACTTCAGCACCAAGTGATTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTCAATTTCGTCGTCAACGATATGCACGCCCTCATAAACGCGGCCACCACATTGGGGATGGTGGATCAAATGGCGGATACAACATTCTCGCCGGAAATGCTTTG
CATAATGGCGGATTCAAATATTTCCATTCACGCCGCCATCGGCCTTCAACTCTGGCCTCCATTCTTTGACCATTACTTCTGCAATGAGGCTCAGCGTTCTTGGTTTTTCC
TCACCAACATTTTCCCTCTTGCCCTAGATTTACAAGATTCTGGTTACACTTCTTTGACCTTCTCTATCCCTTACCCCGAACGTGCCGAACTCAAATTCCAAGGCCCAAAT
GGCCTTCTTCGCGAAATTGATTTCGAATTGGCTTATTCCCATGATCCTTTGTTCATCAGCGAATTTGATCTCTCCATTTTTGTTTCCATGGATTCTCAACAATTCTCCCA
CATTATCGCTGAATATCATATGTTTGATTACGTTCAAGTTACTGTAACAAGCACACGAGTGACATTCTCTTATGCAATTATGCAAGAGACAAGTCTTAGCCCACAGGATG
GAGAATGCATAATTGGAGGTATTAGAGCACCAAATCAAATTCAATTCATGATCAATTTGAGTCCACCAGAAGCCTTCTATCATATCGCAAGCCAAACGAAGAGGATATGG
TTCTTCAAAACTTGTAATTCCACCAAAGGTTTAATTACTGCCCCTCTTGGATTGAATGGTCGACTTGTTTCTTTTTTCTGTACTTCAGCACCAAGTGATTATTAG
Protein sequenceShow/hide protein sequence
MSFNFVVNDMHALINAATTLGMVDQMADTTFSPEMLCIMADSNISIHAAIGLQLWPPFFDHYFCNEAQRSWFFLTNIFPLALDLQDSGYTSLTFSIPYPERAELKFQGPN
GLLREIDFELAYSHDPLFISEFDLSIFVSMDSQQFSHIIAEYHMFDYVQVTVTSTRVTFSYAIMQETSLSPQDGECIIGGIRAPNQIQFMINLSPPEAFYHIASQTKRIW
FFKTCNSTKGLITAPLGLNGRLVSFFCTSAPSDY