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Clc06G03350 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G03350
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr06:3560600..3561402
RNA-Seq ExpressionClc06G03350
SyntenyClc06G03350
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646794.1 hypothetical protein Csa_005459, partial [Cucumis sativus]3.9e-1064.94Show/hide
Query:  GKMGKMVLSGDKAAIECMKLSPSKPVEERETDRSKRSNKYKR-RKKQLKRV--EKLKKVSWKVV--DDDHKKVKGNN
        GKMGKMV+S ++AAIECMKLS  KP EE E+  SKR  KYKR R++QLKR+  ++L+KV WKV   DDDHKKVKGN+
Subjt:  GKMGKMVLSGDKAAIECMKLSPSKPVEERETDRSKRSNKYKR-RKKQLKRV--EKLKKVSWKVV--DDDHKKVKGNN

XP_022147230.1 uncharacterized protein LOC111016228 [Momordica charantia]3.5e-2763.5Show/hide
Query:  MSISFYLLLLLFLICIAFQPCYLRSLQLADDTFQKKLQAPIKGKMGKMVL-SGDKAAIECMKLSPSKPVEE-RETDRSKRSNKYKRRKKQLKR-VEKLKK
        MSISFYL+LL  L+ I+FQ C+ +SL+ AD+  + KLQA ++G++ +MVL S +KAA E MKLS SK  EE RET RSKRSNKYK+RKKQ+KR VE  KK
Subjt:  MSISFYLLLLLFLICIAFQPCYLRSLQLADDTFQKKLQAPIKGKMGKMVL-SGDKAAIECMKLSPSKPVEE-RETDRSKRSNKYKRRKKQLKR-VEKLKK

Query:  VSWKVV--DDDHKKVKGNNGVFSSDYEHARTHPPSHN
        VSW++    D  KK+K NNGVF SDYEHARTHPPSHN
Subjt:  VSWKVV--DDDHKKVKGNNGVFSSDYEHARTHPPSHN

XP_031743890.1 uncharacterized protein LOC116404719 [Cucumis sativus]1.9e-3369.57Show/hide
Query:  MSISFYLLLLLFLICIAF-QPCYLRSLQLADDTFQKKLQAPIKGKMGKMVLSGDKAAIECMKLSPSKPVEERETDRSKRSNKYKR-RKKQLKRV--EKLK
        MSISFY  LLLFLICI+F  P + + LQL  + FQK+LQAPIKGKMGKMV+S ++AAIECMKLS  KP EE E+  SKR  KYKR R++QLKR+  ++L+
Subjt:  MSISFYLLLLLFLICIAF-QPCYLRSLQLADDTFQKKLQAPIKGKMGKMVLSGDKAAIECMKLSPSKPVEERETDRSKRSNKYKR-RKKQLKRV--EKLK

Query:  KVSWKVV--DDDHKKVKGNNGVFSSDYEHARTHPPSHN
        KV WKV   DDDHKKVKGN+GVFSSDYEHARTHPPSHN
Subjt:  KVSWKVV--DDDHKKVKGNNGVFSSDYEHARTHPPSHN

TrEMBL top hitse value%identityAlignment
A0A0A0KA38 Uncharacterized protein6.9e-2170.97Show/hide
Query:  MGKMVLSGDKAAIECMKLSPSKPVEERETDRSKRSNKYKR-RKKQLKRV--EKLKKVSWKVV--DDDHKKVKGNNGVFSSDYEHARTHPPSHN
        MGKMV+S ++AAIECMKLS  KP EE E+  SKR  KYKR R++QLKR+  ++L+KV WKV   DDDHKKVKGN+GVFSSDYEHARTHPPSHN
Subjt:  MGKMVLSGDKAAIECMKLSPSKPVEERETDRSKRSNKYKR-RKKQLKRV--EKLKKVSWKVV--DDDHKKVKGNNGVFSSDYEHARTHPPSHN

A0A6J1CZK4 uncharacterized protein LOC1110162281.7e-2763.5Show/hide
Query:  MSISFYLLLLLFLICIAFQPCYLRSLQLADDTFQKKLQAPIKGKMGKMVL-SGDKAAIECMKLSPSKPVEE-RETDRSKRSNKYKRRKKQLKR-VEKLKK
        MSISFYL+LL  L+ I+FQ C+ +SL+ AD+  + KLQA ++G++ +MVL S +KAA E MKLS SK  EE RET RSKRSNKYK+RKKQ+KR VE  KK
Subjt:  MSISFYLLLLLFLICIAFQPCYLRSLQLADDTFQKKLQAPIKGKMGKMVL-SGDKAAIECMKLSPSKPVEE-RETDRSKRSNKYKRRKKQLKR-VEKLKK

Query:  VSWKVV--DDDHKKVKGNNGVFSSDYEHARTHPPSHN
        VSW++    D  KK+K NNGVF SDYEHARTHPPSHN
Subjt:  VSWKVV--DDDHKKVKGNNGVFSSDYEHARTHPPSHN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAATTTCTTTCTATCTTCTTCTTCTTCTTTTTCTTATTTGCATTGCCTTTCAACCATGCTATCTCCGAAGTCTTCAATTAGCTGATGACACATTTCAGAAGAAACT
TCAAGCTCCCATTAAGGGAAAAATGGGGAAGATGGTTCTTTCAGGGGATAAAGCAGCAATAGAATGCATGAAGTTATCACCTTCAAAGCCAGTTGAAGAGAGAGAAACTG
ATAGATCCAAAAGATCAAACAAATATAAGAGGAGAAAGAAGCAGCTGAAGAGAGTAGAAAAGTTGAAAAAAGTTTCATGGAAAGTGGTTGATGATGATCATAAGAAAGTT
AAAGGAAACAATGGTGTTTTCAGTTCAGATTATGAACATGCAAGGACTCATCCTCCTTCTCACAACTAA
mRNA sequenceShow/hide mRNA sequence
CTTGATCTCCATACACATCTCATAGTAATATGTCAATTTCTTTCTATCTTCTTCTTCTTCTTTTTCTTATTTGCATTGCCTTTCAACCATGCTATCTCCGAAGTCTTCAA
TTAGCTGATGACACATTTCAGAAGAAACTTCAAGCTCCCATTAAGGGAAAAATGGGGAAGATGGTTCTTTCAGGGGATAAAGCAGCAATAGAATGCATGAAGTTATCACC
TTCAAAGCCAGTTGAAGAGAGAGAAACTGATAGATCCAAAAGATCAAACAAATATAAGAGGAGAAAGAAGCAGCTGAAGAGAGTAGAAAAGTTGAAAAAAGTTTCATGGA
AAGTGGTTGATGATGATCATAAGAAAGTTAAAGGAAACAATGGTGTTTTCAGTTCAGATTATGAACATGCAAGGACTCATCCTCCTTCTCACAACTAAGCATAGAACTAC
TTATTATTATATTTATTAGCTATATATTTTACATAGAAATAATGAATGTCTGCCTTATTACTCATCACTTATGAAGATCAAATATTTTCTTCTTTTGACCTTCAAGATCT
CTAAAACAAAGTATATGTAATTGAAACCT
Protein sequenceShow/hide protein sequence
MSISFYLLLLLFLICIAFQPCYLRSLQLADDTFQKKLQAPIKGKMGKMVLSGDKAAIECMKLSPSKPVEERETDRSKRSNKYKRRKKQLKRVEKLKKVSWKVVDDDHKKV
KGNNGVFSSDYEHARTHPPSHN