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Clc06G03360 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G03360
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionAutophagy-related protein
Genome locationClcChr06:3564957..3569939
RNA-Seq ExpressionClc06G03360
SyntenyClc06G03360
Gene Ontology termsGO:0006914 - autophagy (biological process)
GO:0006995 - cellular response to nitrogen starvation (biological process)
GO:0005874 - microtubule (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR004241 - Autophagy protein Atg8 ubiquitin-like
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575217.1 Autophagy-related protein 8f, partial [Cucurbita argyrosperma subsp. sororia]4.2e-5298.17Show/hide
Query:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
        +HDFEKR AEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
Subjt:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV

Query:  TYSGENTFG
        TYSGENTFG
Subjt:  TYSGENTFG

XP_008458134.1 PREDICTED: autophagy-related protein 8f [Cucumis melo]4.2e-5298.17Show/hide
Query:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
        +HDFEKR AEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
Subjt:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV

Query:  TYSGENTFG
        TYSGENTFG
Subjt:  TYSGENTFG

XP_010056366.1 autophagy-related protein 8f [Eucalyptus grandis]9.3e-5296.33Show/hide
Query:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
        +HDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG++MSAIYDE+KDEDGFLYV
Subjt:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV

Query:  TYSGENTFG
        TYSGENTFG
Subjt:  TYSGENTFG

XP_030472703.1 autophagy-related protein 8f-like [Syzygium oleosum]1.2e-5196.33Show/hide
Query:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
        +HDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG++MSAIYDE+KDEDGFLYV
Subjt:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV

Query:  TYSGENTFG
        TYSGENTFG
Subjt:  TYSGENTFG

XP_042504730.1 autophagy-related protein 8f-like isoform X2 [Macadamia integrifolia]9.3e-5296.33Show/hide
Query:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
        +HDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG++MSAIYDE+KDEDGFLYV
Subjt:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV

Query:  TYSGENTFG
        TYSGENTFG
Subjt:  TYSGENTFG

TrEMBL top hitse value%identityAlignment
A0A1D1YVX4 Autophagy-related protein (Fragment)2.7e-5281.75Show/hide
Query:  SKETSPLISPSP--------AGHSQFFQ-HDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIF
        S+ +SP+ SP P           S F Q HD EKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIF
Subjt:  SKETSPLISPSP--------AGHSQFFQ-HDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIF

Query:  VDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG
        VDNVLPPTG++MS IYDE+KDEDGFLYVTYSGENTFG
Subjt:  VDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG

A0A1S3C739 Autophagy-related protein2.0e-5298.17Show/hide
Query:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
        +HDFEKR AEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
Subjt:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV

Query:  TYSGENTFG
        TYSGENTFG
Subjt:  TYSGENTFG

A0A5D3CUD2 Autophagy-related protein2.0e-5298.17Show/hide
Query:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
        +HDFEKR AEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
Subjt:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV

Query:  TYSGENTFG
        TYSGENTFG
Subjt:  TYSGENTFG

A0A6J1H5U6 Autophagy-related protein2.0e-5298.17Show/hide
Query:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
        +HDFEKR AEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
Subjt:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV

Query:  TYSGENTFG
        TYSGENTFG
Subjt:  TYSGENTFG

A0A6J1L5L8 Autophagy-related protein2.0e-5298.17Show/hide
Query:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
        +HDFEKR AEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
Subjt:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV

Query:  TYSGENTFG
        TYSGENTFG
Subjt:  TYSGENTFG

SwissProt top hitse value%identityAlignment
A2YS06 Autophagy-related protein 8C3.8e-4886.24Show/hide
Query:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
        +H  E+R+AEA RIREKYPDRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV N LPPT +LMSAIY+E KDEDGFLY+
Subjt:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV

Query:  TYSGENTFG
        TYSGENTFG
Subjt:  TYSGENTFG

M1C146 Autophagy-related protein 8C-like5.9e-4986.24Show/hide
Query:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
        +H  E+R+AEAARIREKYPDRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV N+LPPT ++MSAIY+E KDEDGFLY+
Subjt:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV

Query:  TYSGENTFG
        TYSGENTFG
Subjt:  TYSGENTFG

Q8S926 Autophagy-related protein 8e2.4e-5087.04Show/hide
Query:  HDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVT
        +DFEKR+AEA RIREKYPDRIPVIVEKAE+S++PNIDKKKYLVP+DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG LMS++Y+++KDEDGFLY+T
Subjt:  HDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVT

Query:  YSGENTFG
        YSGENTFG
Subjt:  YSGENTFG

Q8VYK7 Autophagy-related protein 8f2.8e-5189.91Show/hide
Query:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
        +HD EKRRAEAARIREKYPDRIPVIVEKAE+SDIP IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP G+LMS++Y+E+KD+DGFLYV
Subjt:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV

Query:  TYSGENTFG
        TYSGENTFG
Subjt:  TYSGENTFG

Q9LZZ9 Autophagy-related protein 8g3.1e-5088.89Show/hide
Query:  HDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVT
        HDFEKR+AEA RIREKY DR+PVIVEK+E+SDIPNIDKKKYLVPADLTVGQFVYVIRKRI+LSAEKAIFIFVDNVLPPTG++MS IYDE K+EDGFLYVT
Subjt:  HDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVT

Query:  YSGENTFG
        YSGENTFG
Subjt:  YSGENTFG

Arabidopsis top hitse value%identityAlignment
AT2G45170.1 AUTOPHAGY 8E1.7e-5187.04Show/hide
Query:  HDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVT
        +DFEKR+AEA RIREKYPDRIPVIVEKAE+S++PNIDKKKYLVP+DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG LMS++Y+++KDEDGFLY+T
Subjt:  HDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVT

Query:  YSGENTFG
        YSGENTFG
Subjt:  YSGENTFG

AT2G45170.2 AUTOPHAGY 8E1.7e-5187.04Show/hide
Query:  HDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVT
        +DFEKR+AEA RIREKYPDRIPVIVEKAE+S++PNIDKKKYLVP+DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG LMS++Y+++KDEDGFLY+T
Subjt:  HDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVT

Query:  YSGENTFG
        YSGENTFG
Subjt:  YSGENTFG

AT3G60640.1 Ubiquitin-like superfamily protein2.2e-5188.89Show/hide
Query:  HDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVT
        HDFEKR+AEA RIREKY DR+PVIVEK+E+SDIPNIDKKKYLVPADLTVGQFVYVIRKRI+LSAEKAIFIFVDNVLPPTG++MS IYDE K+EDGFLYVT
Subjt:  HDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVT

Query:  YSGENTFG
        YSGENTFG
Subjt:  YSGENTFG

AT4G16520.1 Ubiquitin-like superfamily protein2.0e-5289.91Show/hide
Query:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
        +HD EKRRAEAARIREKYPDRIPVIVEKAE+SDIP IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP G+LMS++Y+E+KD+DGFLYV
Subjt:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV

Query:  TYSGENTFG
        TYSGENTFG
Subjt:  TYSGENTFG

AT4G16520.2 Ubiquitin-like superfamily protein2.0e-5289.91Show/hide
Query:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV
        +HD EKRRAEAARIREKYPDRIPVIVEKAE+SDIP IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP G+LMS++Y+E+KD+DGFLYV
Subjt:  QHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYV

Query:  TYSGENTFG
        TYSGENTFG
Subjt:  TYSGENTFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTATTGCTGGCAAGAAATCAAAGGAAACTTCACCTTTGATCTCCCCTTCCCCCGCCGGCCACTCTCAGTTTTTTCAGCATGATTTTGAAAAGAGACGCGCTGAGGC
AGCCCGGATTAGAGAAAAATACCCAGACAGAATTCCAGTAATCGTGGAGAAGGCAGAGAGAAGTGATATTCCCAACATTGACAAGAAAAAGTATCTAGTGCCTGCTGACC
TGACTGTTGGTCAATTTGTTTACGTTATCCGGAAGAGAATAAAATTGAGTGCAGAGAAGGCAATTTTCATATTCGTGGACAATGTGCTACCTCCAACAGGATCACTAATG
TCTGCAATCTATGATGAGAGGAAGGATGAGGATGGGTTTCTCTATGTTACATACAGTGGAGAAAACACATTTGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTATTGCTGGCAAGAAATCAAAGGAAACTTCACCTTTGATCTCCCCTTCCCCCGCCGGCCACTCTCAGTTTTTTCAGCATGATTTTGAAAAGAGACGCGCTGAGGC
AGCCCGGATTAGAGAAAAATACCCAGACAGAATTCCAGTAATCGTGGAGAAGGCAGAGAGAAGTGATATTCCCAACATTGACAAGAAAAAGTATCTAGTGCCTGCTGACC
TGACTGTTGGTCAATTTGTTTACGTTATCCGGAAGAGAATAAAATTGAGTGCAGAGAAGGCAATTTTCATATTCGTGGACAATGTGCTACCTCCAACAGGATCACTAATG
TCTGCAATCTATGATGAGAGGAAGGATGAGGATGGGTTTCTCTATGTTACATACAGTGGAGAAAACACATTTGGGTGA
Protein sequenceShow/hide protein sequence
MSIAGKKSKETSPLISPSPAGHSQFFQHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLM
SAIYDERKDEDGFLYVTYSGENTFG