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Clc06G03530 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G03530
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS-protein homolog
Genome locationClcChr06:3742721..3744719
RNA-Seq ExpressionClc06G03530
SyntenyClc06G03530
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652336.1 hypothetical protein Csa_021865 [Cucumis sativus]4.4e-3461.06Show/hide
Query:  TNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLNI
        ++W V+I N+QK+A L  HCKSKDDDLG  VL  +G+ YSW FKEN +QTT FWC+F S  GHASFEVFWPE G WL  RCD  NC W A N GF L NI
Subjt:  TNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLNI

Query:  PTKTLEFQHPWLH
        P +  EF H W H
Subjt:  PTKTLEFQHPWLH

XP_008458671.1 PREDICTED: uncharacterized protein LOC103498000 [Cucumis melo]1.1e-6981.88Show/hide
Query:  METLKSFALLVFVLAFACKVERCYCAAWNSKYELPLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHA
        ME LKSFALL+ VLAFA KV++CYC   +SKY+LPLT+WQVTIINYQ NA+LE+HCKSKDDDLGVHV++NEGE YSW FKENW QTTKFWCNFQSRLGHA
Subjt:  METLKSFALLVFVLAFACKVERCYCAAWNSKYELPLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHA

Query:  SFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLNIPTKTLEFQHPWLH
        SFEVFWPE GTWLSDRC +SNCVWVA N GFSLLN P KTLEFQHPWLH
Subjt:  SFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLNIPTKTLEFQHPWLH

XP_011656368.1 S-protein homolog 1 [Cucumis sativus]8.1e-6576.67Show/hide
Query:  METLKSFALLVFVLAFACKVERCYCAAWNSKYELPLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHA
        ME LKSFALL+ VLAFA KV++ YC   +SKY+LPLT+W VTIINYQ NA+L++HCKSKDDDLGVHV++NEGEHYSW FKENW QTTK+WC+FQS+LGHA
Subjt:  METLKSFALLVFVLAFACKVERCYCAAWNSKYELPLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHA

Query:  SFEVFWPENGTWLSDRC-DDSNCVWVADNKGFSLLNIPTKTLEFQHPWLH
        SFEVFWPE GTW SDRC  +SNCVWVA + GFSLLN P KTLEFQHPWLH
Subjt:  SFEVFWPENGTWLSDRC-DDSNCVWVADNKGFSLLNIPTKTLEFQHPWLH

XP_022137291.1 S-protein homolog 1-like [Momordica charantia]6.9e-3257.39Show/hide
Query:  PLTNWQVTIINYQKNAA-LEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENGTWLSDRCDDSNCVWVA-DNKGFS
        P ++WQVTI NY K +A L +HCKSKDDDLG HV++  G  Y W+FKEN++QTT FWCNF+S  GHAS EVFWPE   WL+ RCD SNC+WVA  ++G  
Subjt:  PLTNWQVTIINYQKNAA-LEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENGTWLSDRCDDSNCVWVA-DNKGFS

Query:  LLNIPTKTLEFQHPW
        L ++P +T E ++ W
Subjt:  LLNIPTKTLEFQHPW

XP_038907112.1 S-protein homolog 74-like [Benincasa hispida]1.1e-7789.26Show/hide
Query:  METLKSFALLVFVLAFACKVERCYCAAWNSKYELPLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHA
        ME LKSFALLV VLAFAC VE+CYC  W+SKY+LPLTNWQVTIINYQKNAALE+HCKSKDDDLGVHV+KNEGEHY+W FKEN+ QTT+FWCNFQSRLGHA
Subjt:  METLKSFALLVFVLAFACKVERCYCAAWNSKYELPLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHA

Query:  SFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLNIPTKTLEFQHPWLH
        SFEVFWPE+GTWLSDRCDDSNCVWVADNKGFSLLNIPTKTLEFQHPWLH
Subjt:  SFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLNIPTKTLEFQHPWLH

TrEMBL top hitse value%identityAlignment
A0A0A0KA40 S-protein homolog3.9e-6576.67Show/hide
Query:  METLKSFALLVFVLAFACKVERCYCAAWNSKYELPLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHA
        ME LKSFALL+ VLAFA KV++ YC   +SKY+LPLT+W VTIINYQ NA+L++HCKSKDDDLGVHV++NEGEHYSW FKENW QTTK+WC+FQS+LGHA
Subjt:  METLKSFALLVFVLAFACKVERCYCAAWNSKYELPLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHA

Query:  SFEVFWPENGTWLSDRC-DDSNCVWVADNKGFSLLNIPTKTLEFQHPWLH
        SFEVFWPE GTW SDRC  +SNCVWVA + GFSLLN P KTLEFQHPWLH
Subjt:  SFEVFWPENGTWLSDRC-DDSNCVWVADNKGFSLLNIPTKTLEFQHPWLH

A0A1S3C8Z6 S-protein homolog5.3e-7081.88Show/hide
Query:  METLKSFALLVFVLAFACKVERCYCAAWNSKYELPLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHA
        ME LKSFALL+ VLAFA KV++CYC   +SKY+LPLT+WQVTIINYQ NA+LE+HCKSKDDDLGVHV++NEGE YSW FKENW QTTKFWCNFQSRLGHA
Subjt:  METLKSFALLVFVLAFACKVERCYCAAWNSKYELPLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHA

Query:  SFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLNIPTKTLEFQHPWLH
        SFEVFWPE GTWLSDRC +SNCVWVA N GFSLLN P KTLEFQHPWLH
Subjt:  SFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLNIPTKTLEFQHPWLH

A0A6J1C659 S-protein homolog3.4e-3257.39Show/hide
Query:  PLTNWQVTIINYQKNAA-LEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENGTWLSDRCDDSNCVWVA-DNKGFS
        P ++WQVTI NY K +A L +HCKSKDDDLG HV++  G  Y W+FKEN++QTT FWCNF+S  GHAS EVFWPE   WL+ RCD SNC+WVA  ++G  
Subjt:  PLTNWQVTIINYQKNAA-LEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENGTWLSDRCDDSNCVWVA-DNKGFS

Query:  LLNIPTKTLEFQHPW
        L ++P +T E ++ W
Subjt:  LLNIPTKTLEFQHPW

A0A6J1GSD6 S-protein homolog3.8e-2846.09Show/hide
Query:  VERCYCAAWNSKYELPLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENGTWLSDRCDD
        +  C+  + +S  +   +NW+V I+N  K++ L +HCKSKDDDLG HV+K  G+ Y W+F EN  QTT +WCNF S+ G AS +VFWPE   WLSDRC+ 
Subjt:  VERCYCAAWNSKYELPLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENGTWLSDRCDD

Query:  SNCVWVADNKGFSLLNIPTKTLEFQHPW
        + C+WVA + G S+        E  +PW
Subjt:  SNCVWVADNKGFSLLNIPTKTLEFQHPW

A0A6J1KR58 S-protein homolog3.5e-2943.88Show/hide
Query:  LLVFVLAFACKVERCYCAAWNSKYELPLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPE
        +L+  L     ++ C+     SK +LP + WQVTI N+  ++ L +HCKSKD+DLG H +K +G++Y  +FKEN +QTT+FWC+F S+ G  + +VFWPE
Subjt:  LLVFVLAFACKVERCYCAAWNSKYELPLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPE

Query:  NGTWLSDRCDDSNCVWVADNKGFSLLNIPTKTLEFQHPW
         G+ LSD C+D NCVW A + G  LL     + +  +PW
Subjt:  NGTWLSDRCDDSNCVWVADNKGFSLLNIPTKTLEFQHPW

SwissProt top hitse value%identityAlignment
F4JLQ5 S-protein homolog 24.6e-1033.33Show/hide
Query:  HCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLNIPTKTLEFQHPW
        HCKSKDDDLG   L+  GE +S+ F   +F  T ++C+F       SF+++     +   ++C+   CVW     G    N  TK  +  +PW
Subjt:  HCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLNIPTKTLEFQHPW

F4JLS0 S-protein homolog 11.6e-1536.96Show/hide
Query:  METLKSFALLV-FVLAFACKVERCYCAAWNSKYELP-LTNWQVTIIN-YQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRL
        M  +K F L + F LA  C+              +P ++ WQVT++N       L IHCKSK+DDLG   LK     +SW F EN   +T FWC      
Subjt:  METLKSFALLV-FVLAFACKVERCYCAAWNSKYELP-LTNWQVTIIN-YQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRL

Query:  GHASFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLN
        GH +  VFW +    L  RC   NC+W A   G  L N
Subjt:  GHASFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLN

Q2HQ46 S-protein homolog 742.8e-1537.68Show/hide
Query:  METLKSFALLV-FVLAFACKVERCYCAAWNSKYELP-LTNWQVTIIN-YQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRL
        M  +K F L + F L   C+              +P ++ WQVT+ N       L IHCKSK++DLG   LK   + +SW F EN   +T FWC      
Subjt:  METLKSFALLV-FVLAFACKVERCYCAAWNSKYELP-LTNWQVTIIN-YQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRL

Query:  GHASFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLN
        GH + +VFW +    L  RCD  NCVW A N G  L N
Subjt:  GHASFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLN

Q9FI83 S-protein homolog 283.5e-1036.94Show/hide
Query:  QVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENGTWLSDRCDDSNCVWVADNKGF-SLLNIPT
        +VTI NY  +  L IHCKS+DDDLG H+L  +GE + W+F  N+  +T  +C F  R  +    + +  +  +   RC  +NC W A+  GF    +IPT
Subjt:  QVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENGTWLSDRCDDSNCVWVADNKGF-SLLNIPT

Query:  KTLEFQHPWLH
        +   F + WL+
Subjt:  KTLEFQHPWLH

Q9FI84 S-protein homolog 272.3e-0937.07Show/hide
Query:  PLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNF-QSRLGHASFEVFWPENGTWLSDRCDDSNCVWVADNKG-FS
        PLT  ++T+ N   +  L IHCKSKDDDLG H+ K EGE Y W+F  N+  +T ++C F Q +     F++   E   +   RC   NC W A     + 
Subjt:  PLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNF-QSRLGHASFEVFWPENGTWLSDRCDDSNCVWVADNKG-FS

Query:  LLNIPTKTLEFQHPWL
          N+P +T+ +   WL
Subjt:  LLNIPTKTLEFQHPWL

Arabidopsis top hitse value%identityAlignment
AT4G16195.1 Plant self-incompatibility protein S1 family3.2e-1133.33Show/hide
Query:  HCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLNIPTKTLEFQHPW
        HCKSKDDDLG   L+  GE +S+ F   +F  T ++C+F       SF+++     +   ++C+   CVW     G    N  TK  +  +PW
Subjt:  HCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLNIPTKTLEFQHPW

AT4G16295.1 S-protein homologue 11.1e-1636.96Show/hide
Query:  METLKSFALLV-FVLAFACKVERCYCAAWNSKYELP-LTNWQVTIIN-YQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRL
        M  +K F L + F LA  C+              +P ++ WQVT++N       L IHCKSK+DDLG   LK     +SW F EN   +T FWC      
Subjt:  METLKSFALLV-FVLAFACKVERCYCAAWNSKYELP-LTNWQVTIIN-YQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRL

Query:  GHASFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLN
        GH +  VFW +    L  RC   NC+W A   G  L N
Subjt:  GHASFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLN

AT4G29035.1 Plant self-incompatibility protein S1 family2.0e-1637.68Show/hide
Query:  METLKSFALLV-FVLAFACKVERCYCAAWNSKYELP-LTNWQVTIIN-YQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRL
        M  +K F L + F L   C+              +P ++ WQVT+ N       L IHCKSK++DLG   LK   + +SW F EN   +T FWC      
Subjt:  METLKSFALLV-FVLAFACKVERCYCAAWNSKYELP-LTNWQVTIIN-YQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRL

Query:  GHASFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLN
        GH + +VFW +    L  RCD  NCVW A N G  L N
Subjt:  GHASFEVFWPENGTWLSDRCDDSNCVWVADNKGFSLLN

AT5G06020.1 Plant self-incompatibility protein S1 family1.6e-1037.07Show/hide
Query:  PLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNF-QSRLGHASFEVFWPENGTWLSDRCDDSNCVWVADNKG-FS
        PLT  ++T+ N   +  L IHCKSKDDDLG H+ K EGE Y W+F  N+  +T ++C F Q +     F++   E   +   RC   NC W A     + 
Subjt:  PLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNF-QSRLGHASFEVFWPENGTWLSDRCDDSNCVWVADNKG-FS

Query:  LLNIPTKTLEFQHPWL
          N+P +T+ +   WL
Subjt:  LLNIPTKTLEFQHPWL

AT5G06030.1 Plant self-incompatibility protein S1 family2.5e-1136.94Show/hide
Query:  QVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENGTWLSDRCDDSNCVWVADNKGF-SLLNIPT
        +VTI NY  +  L IHCKS+DDDLG H+L  +GE + W+F  N+  +T  +C F  R  +    + +  +  +   RC  +NC W A+  GF    +IPT
Subjt:  QVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENGTWLSDRCDDSNCVWVADNKGF-SLLNIPT

Query:  KTLEFQHPWLH
        +   F + WL+
Subjt:  KTLEFQHPWLH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACTCTTAAATCTTTTGCACTTTTGGTTTTCGTTTTGGCATTTGCGTGCAAAGTCGAACGATGTTATTGTGCTGCATGGAATTCAAAATACGAGCTACCATTGAC
GAATTGGCAAGTAACTATTATAAACTACCAAAAGAATGCAGCTCTAGAGATTCATTGCAAATCGAAAGACGACGATTTAGGAGTGCACGTGCTAAAGAATGAAGGAGAGC
ATTATAGTTGGGAATTCAAGGAGAATTGGTTTCAAACGACGAAATTTTGGTGCAATTTTCAGAGCAGATTAGGGCATGCTTCATTCGAAGTATTTTGGCCAGAGAATGGA
ACTTGGCTTTCCGATCGGTGTGATGATTCAAATTGCGTTTGGGTTGCTGATAATAAAGGCTTCTCTTTGCTCAATATTCCTACTAAGACTTTGGAGTTTCAACATCCATG
GCTACACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAACTCTTAAATCTTTTGCACTTTTGGTTTTCGTTTTGGCATTTGCGTGCAAAGTCGAACGATGTTATTGTGCTGCATGGAATTCAAAATACGAGCTACCATTGAC
GAATTGGCAAGTAACTATTATAAACTACCAAAAGAATGCAGCTCTAGAGATTCATTGCAAATCGAAAGACGACGATTTAGGAGTGCACGTGCTAAAGAATGAAGGAGAGC
ATTATAGTTGGGAATTCAAGGAGAATTGGTTTCAAACGACGAAATTTTGGTGCAATTTTCAGAGCAGATTAGGGCATGCTTCATTCGAAGTATTTTGGCCAGAGAATGGA
ACTTGGCTTTCCGATCGGTGTGATGATTCAAATTGCGTTTGGGTTGCTGATAATAAAGGCTTCTCTTTGCTCAATATTCCTACTAAGACTTTGGAGTTTCAACATCCATG
GCTACACTAG
Protein sequenceShow/hide protein sequence
METLKSFALLVFVLAFACKVERCYCAAWNSKYELPLTNWQVTIINYQKNAALEIHCKSKDDDLGVHVLKNEGEHYSWEFKENWFQTTKFWCNFQSRLGHASFEVFWPENG
TWLSDRCDDSNCVWVADNKGFSLLNIPTKTLEFQHPWLH