CuGenDBv2

Gene ID	Clc06G04000
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Protein TonB like
Genome location	ClcChr06:4223318..4226106
RNA-Seq Expression	Clc06G04000
Synteny	Clc06G04000
Gene Ontology terms	GO:0070072 - vacuolar proton-transporting V-type ATPase complex assembly (biological process) GO:0005789 - endoplasmic reticulum membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR021013 - ATPase, vacuolar ER assembly factor, Vma12

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004138504.1 uncharacterized protein LOC101222938 [Cucumis sativus]

5.6e-93

90.78

Show/hide

Query:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA
        MIND   PSGLVLS+TEAIRSFLTSASIDS+LS+ELR IASDL S+ NIPY+ LRAIWFATES TRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA
Subjt:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA

Query:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S
        DVAERKAYQELVKDIAPKKPIDEPFSSYKDQ+GFGLHV LIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSS    S
Subjt:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S

Query:  KLKKSQ
        KLKKSQ
Subjt:  KLKKSQ

XP_008458236.1 PREDICTED: uncharacterized protein LOC103497719 [Cucumis melo]

7.4e-93

90.78

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Query:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA
        MIND   PSGLVLS+TEAIRSFLTSASIDS+LS+ELR IASDLAS+ NIPY+ LRAIWFATES TRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA
Subjt:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA

Query:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S
        DVAERKAYQELVKDIAPKKPIDEPFSSYKDQ+GFGLHV LIMFTGYL+GYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSS    S
Subjt:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S

Query:  KLKKSQ
        KLKKSQ
Subjt:  KLKKSQ

XP_022959366.1 uncharacterized protein LOC111460360 [Cucurbita moschata]

3.3e-93

88.35

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Query:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA
        MIND+ HPSGLV+++TEAIRSFLTSASIDSR+SEELR +AS+LAS++N+PY+PLRAIWFATES TRPDLLRLL GSEFVFTSPKPREKSEELKARLKKLA
Subjt:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA

Query:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S
        DVAERKAYQELVKDIAPKKPIDEPFSSYKDQ+GFGLHV LIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIR+S+YDNRSS    S
Subjt:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S

Query:  KLKKSQ
        KLKK+Q
Subjt:  KLKKSQ

XP_023548168.1 uncharacterized protein LOC111806888 [Cucurbita pepo subsp. pepo]

4.3e-93

87.86

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Query:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA
        MIND+ HPSGLV+++TEAIRSFLTSASIDSR+SEELR +AS+LAS++N+PY+PLRAIWFATES TRPDLLRLL GSEFVFTSPKPREKSEELKARLKKLA
Subjt:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA

Query:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S
        DVAERKAYQELVKDIAPKKP+DEPFSSYKDQ+GFGLHV LIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIR+S+YDNRSS    S
Subjt:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S

Query:  KLKKSQ
        KLKK+Q
Subjt:  KLKKSQ

XP_038876067.1 uncharacterized protein LOC120068388 [Benincasa hispida]

1.3e-94

91.26

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Query:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA
        MIND THPSGLVLSNTEAIRSFLTSASIDS+LS+ELR IASDLAS+ NIPY+PLRAIWFA ES  RPDLLRLLAGSEFV TSPKPREKSEELKARLKKLA
Subjt:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA

Query:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S
        DVAERKAYQELVKDIAPKKPI+EPFSSYKDQ+GFGLHV LIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSS    S
Subjt:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S

Query:  KLKKSQ
        KLKKSQ
Subjt:  KLKKSQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7F5 Uncharacterized protein

2.7e-93

90.78

Show/hide

Query:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA
        MIND   PSGLVLS+TEAIRSFLTSASIDS+LS+ELR IASDL S+ NIPY+ LRAIWFATES TRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA
Subjt:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA

Query:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S
        DVAERKAYQELVKDIAPKKPIDEPFSSYKDQ+GFGLHV LIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSS    S
Subjt:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S

Query:  KLKKSQ
        KLKKSQ
Subjt:  KLKKSQ

A0A1S3C6X8 uncharacterized protein LOC103497719

3.6e-93

90.78

Show/hide

Query:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA
        MIND   PSGLVLS+TEAIRSFLTSASIDS+LS+ELR IASDLAS+ NIPY+ LRAIWFATES TRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA
Subjt:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA

Query:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S
        DVAERKAYQELVKDIAPKKPIDEPFSSYKDQ+GFGLHV LIMFTGYL+GYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSS    S
Subjt:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S

Query:  KLKKSQ
        KLKKSQ
Subjt:  KLKKSQ

A0A5D3BV73 Uncharacterized protein

3.6e-93

90.78

Show/hide

Query:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA
        MIND   PSGLVLS+TEAIRSFLTSASIDS+LS+ELR IASDLAS+ NIPY+ LRAIWFATES TRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA
Subjt:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA

Query:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S
        DVAERKAYQELVKDIAPKKPIDEPFSSYKDQ+GFGLHV LIMFTGYL+GYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSS    S
Subjt:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S

Query:  KLKKSQ
        KLKKSQ
Subjt:  KLKKSQ

A0A6J1H4N6 uncharacterized protein LOC111460360

1.6e-93

88.35

Show/hide

Query:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA
        MIND+ HPSGLV+++TEAIRSFLTSASIDSR+SEELR +AS+LAS++N+PY+PLRAIWFATES TRPDLLRLL GSEFVFTSPKPREKSEELKARLKKLA
Subjt:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA

Query:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S
        DVAERKAYQELVKDIAPKKPIDEPFSSYKDQ+GFGLHV LIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIR+S+YDNRSS    S
Subjt:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S

Query:  KLKKSQ
        KLKK+Q
Subjt:  KLKKSQ

A0A6J1L0S3 uncharacterized protein LOC111499322

3.9e-92

86.89

Show/hide

Query:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA
        MIND+ HPSGLV+++TEAIR+FLTSASIDSR+SEELR +AS+LAS++N+PY+PLRAIWFATES TRPDLLRLL GSEFVFTSPKPREKSEELKARLK LA
Subjt:  MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLA

Query:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S
        DVAERKAYQELVKDIAPKKPIDEPFSSYKDQ+GFGLHV LIMFTGYLVGY LFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIR+S+YDNRSS    S
Subjt:  DVAERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSP---S

Query:  KLKKSQ
        KLKK+Q
Subjt:  KLKKSQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G52980.1 CONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

3.0e-68

68.34

Show/hide

Query:  DRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLADVA
        D  + SGL+LS TE +RSFL  AS D RLS+ELR IASDL SKN IPY+ LRAIW  ++  TRPDLL L +GS FVFTSPKPREKSEELK RL KL ++A
Subjt:  DRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLADVA

Query:  ERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSPSKLKKS
        ERK Y ELVKDI PKK ++EPFSSYKDQ+GFGLHV L MFTGYLVGYA FRALF  +P +SAAGGILGLV  MLVETLLFII++S  D   S     +S
Subjt:  ERKAYQELVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSPSKLKKS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATCAACGACCGCACACATCCTTCTGGTCTTGTTCTATCTAACACTGAAGCAATTCGCTCATTTCTCACCTCGGCGTCCATAGACTCACGACTTTCTGAGGAACTCCG
GCCGATTGCTTCAGATCTCGCTTCAAAAAACAACATTCCGTATGAGCCTCTGAGAGCTATCTGGTTTGCTACGGAATCGTGCACACGGCCGGATTTGCTCCGTCTTTTGG
CTGGATCGGAGTTCGTCTTTACAAGCCCTAAACCCAGGGAGAAGAGTGAGGAGTTAAAGGCTAGACTGAAGAAGCTTGCAGATGTAGCAGAGAGGAAGGCCTATCAGGAA
CTGGTGAAGGATATTGCACCTAAGAAACCAATTGATGAGCCTTTCTCTTCCTACAAGGATCAGATCGGATTCGGTTTACATGTCGCGTTGATAATGTTTACTGGCTATCT
TGTTGGATATGCATTATTCCGAGCATTGTTTAGGCATGATCCAATCATGAGTGCTGCTGGAGGTATCCTCGGATTAGTTTTTGGCATGCTCGTAGAAACACTTCTTTTCA
TTATTCGATCGTCCAATTATGATAATCGGTCTTCCCCTTCTAAGCTAAAGAAGAGTCAGTAG

mRNA sequence

Show/hide mRNA sequence

AGACTTTTTATTTATTTTTTTGATAATATTTAGAGTGAGAATTTATTGATTTTCTTTCCCCTTGAAAATTTAGCCCGATTCTATTAAAACGTTGGACTCCATTTTAATTG
CTTTGAGCTCTCGTCTTCCACCGGTCTCGTCGGCGGCAAGGATATCGCTGTTCTCGAACCGGAAAACACATATTCTACGATGATCAACGACCGCACACATCCTTCTGGTC
TTGTTCTATCTAACACTGAAGCAATTCGCTCATTTCTCACCTCGGCGTCCATAGACTCACGACTTTCTGAGGAACTCCGGCCGATTGCTTCAGATCTCGCTTCAAAAAAC
AACATTCCGTATGAGCCTCTGAGAGCTATCTGGTTTGCTACGGAATCGTGCACACGGCCGGATTTGCTCCGTCTTTTGGCTGGATCGGAGTTCGTCTTTACAAGCCCTAA
ACCCAGGGAGAAGAGTGAGGAGTTAAAGGCTAGACTGAAGAAGCTTGCAGATGTAGCAGAGAGGAAGGCCTATCAGGAACTGGTGAAGGATATTGCACCTAAGAAACCAA
TTGATGAGCCTTTCTCTTCCTACAAGGATCAGATCGGATTCGGTTTACATGTCGCGTTGATAATGTTTACTGGCTATCTTGTTGGATATGCATTATTCCGAGCATTGTTT
AGGCATGATCCAATCATGAGTGCTGCTGGAGGTATCCTCGGATTAGTTTTTGGCATGCTCGTAGAAACACTTCTTTTCATTATTCGATCGTCCAATTATGATAATCGGTC
TTCCCCTTCTAAGCTAAAGAAGAGTCAGTAGAGTTACTTCTCTTGAGTTTAGGGTTTAGGGTTTATGATAATCGGTCTTCCCGTTCTAAGCTGAAGGTAGCATTTTGGTG
TCCATCTGGTCGGACGTTACAACACCCAACAAGTTCTCCCTTGTTTAAAGAGTGTCTACTATATATATGACTTCGAGCTACAGTATCAAGACACGTTTTTCGGTTCGGTT
CGGTTGCTTTCATCTTAAACTTCAACACCGGATTTTGATATCCTCCTTCCTTCCAGATACGCACAAGTCATGTGGAGGTATTATGCTGTGGTTGGATTGGGATCCAACTT
GGAATTTTGATGTATACTGTTTTGTCAAGTTAGCTATTACAGTTTTATACAATTTGGATATAGAAGACAATAGGGCAATCATAATATGACAATCCCATTGAATTATTTTT
CAATGACGTGACATTCATTTTCTCTAAAATGTTATAGAAATATTTATTATGAGTTATTAGAGTTTCATTTAGTTGAACTATAAATTTGGTCACTTTTTTTTTTTTT

Protein sequence

Show/hide protein sequence

MINDRTHPSGLVLSNTEAIRSFLTSASIDSRLSEELRPIASDLASKNNIPYEPLRAIWFATESCTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLADVAERKAYQE
LVKDIAPKKPIDEPFSSYKDQIGFGLHVALIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLLFIIRSSNYDNRSSPSKLKKSQ

Clc06G04000 (gene) of Watermelon (cordophanus) v2 genome