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Clc06G04010 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G04010
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionBeta-amylase
Genome locationClcChr06:4228028..4228852
RNA-Seq ExpressionClc06G04010
SyntenyClc06G04010
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593667.1 Beta-amylase 7, partial [Cucurbita argyrosperma subsp. sororia]9.2e-0639Show/hide
Query:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSAGISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLCKEV
        MFLDSSP    L+DGKSI +YL FR KGFVISAR F              G  ++E   W   L    C+  +              L+ T  CQLC+EV
Subjt:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSAGISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLCKEV
KAG7026001.1 hypothetical protein SDJN02_12499 [Cucurbita argyrosperma subsp. argyrosperma]1.2e-1044Show/hide
Query:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSAGISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLCKEV
        MFLDSSP    L+DGKSI +YL FR KGFVISAR F G V DLG      G  ++E   W   L    C+  +              L+ T  CQLC+EV
Subjt:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSAGISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLCKEV
XP_022964580.1 beta-amylase 7-like isoform X1 [Cucurbita moschata]3.7e-0742.72Show/hide
Query:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSA---GISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLC
        MFLDSSP    L+DGKSI +YL FR KGFVI AR F G V DL +  F A    + S  AG        R C ++ +             L+ T  CQLC
Subjt:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSA---GISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLC

Query:  KEV
        +EV
Subjt:  KEV
XP_022964581.1 beta-amylase 7-like isoform X2 [Cucurbita moschata]3.7e-0742.72Show/hide
Query:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSA---GISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLC
        MFLDSSP    L+DGKSI +YL FR KGFVI AR F G V DL +  F A    + S  AG        R C ++ +             L+ T  CQLC
Subjt:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSA---GISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLC

Query:  KEV
        +EV
Subjt:  KEV
XP_022964593.1 beta-amylase 7-like isoform X6 [Cucurbita moschata]3.7e-0742.72Show/hide
Query:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSA---GISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLC
        MFLDSSP    L+DGKSI +YL FR KGFVI AR F G V DL +  F A    + S  AG        R C ++ +             L+ T  CQLC
Subjt:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSA---GISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLC

Query:  KEV
        +EV
Subjt:  KEV
TrEMBL top hitse value%identityAlignment
A0A6J1HI67 Beta-amylase1.1e-0438.46Show/hide
Query:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGI----VEDLGLPSFSAGISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQL
        MFLDSSP    L+DGKSI +YL FR KGFVI AR F  I      +  +PS  AG               R C ++ +             L+ T  CQL
Subjt:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGI----VEDLGLPSFSAGISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQL

Query:  CKEV
        C+EV
Subjt:  CKEV
A0A6J1HJC8 Beta-amylase1.8e-0742.72Show/hide
Query:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSA---GISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLC
        MFLDSSP    L+DGKSI +YL FR KGFVI AR F G V DL +  F A    + S  AG        R C ++ +             L+ T  CQLC
Subjt:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSA---GISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLC

Query:  KEV
        +EV
Subjt:  KEV
A0A6J1HL80 Beta-amylase1.8e-0742.72Show/hide
Query:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSA---GISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLC
        MFLDSSP    L+DGKSI +YL FR KGFVI AR F G V DL +  F A    + S  AG        R C ++ +             L+ T  CQLC
Subjt:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSA---GISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLC

Query:  KEV
        +EV
Subjt:  KEV
A0A6J1HLB5 Beta-amylase1.8e-0742.72Show/hide
Query:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSA---GISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLC
        MFLDSSP    L+DGKSI +YL FR KGFVI AR F G V DL +  F A    + S  AG        R C ++ +             L+ T  CQLC
Subjt:  MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSA---GISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLC

Query:  KEV
        +EV
Subjt:  KEV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCTTGATTCTTCTCCGGCCGGAGCCTGGCTGATCGACGGCAAATCGATTCCGGAGTACCTTACCTTTCGCCGGAAAGGTTTCGTCATCTCCGCGAGAAATTTTTT
TGGTATAGTTGAAGATTTAGGCCTTCCGAGTTTTTCAGCCGGAATTTCAAGTTGGGAAGCTGGAAAGTGGAAACACACTCTCGTATACAGATTATGCATTCTCAGAAGTG
AACTTTTTACGGTGTTTGTGGAGAATAGGATGAACATCAAACTGCAAAGTACTCTTTGCTGCCAGCTTTGCAAAGAAGTCCATGTAGTGGTGGCACTGGTACCATATGGA
ATGCGTTATCTGGACATTAACTTTCACTGGATTCAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCCTTGATTCTTCTCCGGCCGGAGCCTGGCTGATCGACGGCAAATCGATTCCGGAGTACCTTACCTTTCGCCGGAAAGGTTTCGTCATCTCCGCGAGAAATTTTTT
TGGTATAGTTGAAGATTTAGGCCTTCCGAGTTTTTCAGCCGGAATTTCAAGTTGGGAAGCTGGAAAGTGGAAACACACTCTCGTATACAGATTATGCATTCTCAGAAGTG
AACTTTTTACGGTGTTTGTGGAGAATAGGATGAACATCAAACTGCAAAGTACTCTTTGCTGCCAGCTTTGCAAAGAAGTCCATGTAGTGGTGGCACTGGTACCATATGGA
ATGCGTTATCTGGACATTAACTTTCACTGGATTCAGAAATAG
Protein sequenceShow/hide protein sequence
MFLDSSPAGAWLIDGKSIPEYLTFRRKGFVISARNFFGIVEDLGLPSFSAGISSWEAGKWKHTLVYRLCILRSELFTVFVENRMNIKLQSTLCCQLCKEVHVVVALVPYG
MRYLDINFHWIQK