; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G04110 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G04110
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationClcChr06:4318974..4321005
RNA-Seq ExpressionClc06G04110
SyntenyClc06G04110
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013723.1 hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-7260.24Show/hide
Query:  MFLVRLTQFEPLLDATSLLAQISNNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQTN
        MFLV+L QFEPLLDATSLL QIS +ADV+FT + L LI S H  PRFVATLQ+S   FTN+S D  H++S  VSL+SFHDAMLD G FSSM+IH+L+   
Subjt:  MFLVRLTQFEPLLDATSLLAQISNNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQTN

Query:  KLILRFETP-SQIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFEEE
        ++ILR+E P S  PPLH EL LSPP  AE+    Q++ GK+F V SK LR+IIKELP+F D+ +V V AT +R+KFSIASKEIT+TK   +C++VG+E E
Subjt:  KLILRFETP-SQIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFEEE

Query:  VETQFQIILHPMLFFLDFTHKSNKIWFFKTKNNSHSVMSVPAYGFVGQYLIYFP
         ET+  I   PM+FFL+FT+K+N++WF+KT  NS SV+SVPA+G  GQY++YFP
Subjt:  VETQFQIILHPMLFFLDFTHKSNKIWFFKTKNNSHSVMSVPAYGFVGQYLIYFP

XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]4.6e-6864.73Show/hide
Query:  MFLVRLTQFEPLLDATSLLAQISNNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQTN
        MFLVRL QFEPL+DATSLLAQ++ +ADVKFTP  L +IVS+   P+FVATLQLS+  FTNFS D  H+ S  VSLQ FHDAMLD G FSSMTIHLLD TN
Subjt:  MFLVRLTQFEPLLDATSLLAQISNNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQTN

Query:  KLILRFETPS-QIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFEEE
        +++LRFETPS  +PPLHHEL LSPP  AEN    Q++ G +F V S+ELRRIIKELP+F  ++ V V  T S++KFSI SKEI LTK G HCK+VG+E E
Subjt:  KLILRFETPS-QIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFEEE

Query:  VETQFQIILHPMLFFLDFTHKSNK
        VET+ Q++L PM+FFL+FT+++NK
Subjt:  VETQFQIILHPMLFFLDFTHKSNK

XP_008464344.1 PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]5.8e-8767.19Show/hide
Query:  MFLVRLTQFEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQT
        MFLV+L  F+PLLDATS LAQIS +NAD+KFTP   ++I SH   PRF+ATLQLS  +FT FS D  + HS  VSL+SFHDA+LD G F+SMTIHLLD+T
Subjt:  MFLVRLTQFEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQT

Query:  NKLILRFETP-SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFE
        N++ILRF+TP S+I PLHHELTLSPP   +N IG+ +LD  KYFIVKSK LRRIIK+LPIFQ++S++ V  T SR+KFSIASKEI LT+ G HCK+ GFE
Subjt:  NKLILRFETP-SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFE

Query:  EEVETQFQIILHPMLFFLDFTHKSNKIWFFKTKNNSHSVMSVPAYGFVGQYLIYFP
        EEVETQFQIIL PM+FFL+FT+K+N++WF+KTKNN++++M VPAYG  GQY+IYFP
Subjt:  EEVETQFQIILHPMLFFLDFTHKSNKIWFFKTKNNSHSVMSVPAYGFVGQYLIYFP

XP_031743957.1 uncharacterized protein LOC116404737 [Cucumis sativus]1.6e-8164.45Show/hide
Query:  MFLVRLTQFEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQT
        MFLV+LT+FEPLLD+T  LA  S NNA VKFTP  L+LIVS+   P F+ATLQLS  +FTNFS D  H HS  VSL+SFHDAMLD G+FS+M+IHLLD+T
Subjt:  MFLVRLTQFEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQT

Query:  NKLILRFETP-SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFE
        N++ILRF+TP SQI PLH ELTLSPP   ++ IG+ +L+L K+FIV SK LRR+IKELPIFQ++S++CV  T S+IKFSIAS +I  ++ G HC++ GFE
Subjt:  NKLILRFETP-SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFE

Query:  EEVETQFQIILHPMLFFLDFTHKSNKIWFFKTKNNSHSVMSVPAYGFVGQYLIYFP
        EEVETQFQI L PMLFFL+FT++++++WF+KTKNN+++VM VPA+G  GQY IYFP
Subjt:  EEVETQFQIILHPMLFFLDFTHKSNKIWFFKTKNNSHSVMSVPAYGFVGQYLIYFP

XP_038875055.1 uncharacterized protein LOC120067580 [Benincasa hispida]1.8e-9672.55Show/hide
Query:  MFLVRLTQFEPLLDATSLLAQISNNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQTN
        MFLV+LT FEPLLDATS LAQISN ADVKFTP   YLI + +P PRFVATLQLSQ  FTN+S D  H H+  V L+SFHDA+LD G F+SMTIHLL++ N
Subjt:  MFLVRLTQFEPLLDATSLLAQISNNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQTN

Query:  KLILRFETP-SQIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFEEE
        ++ILRF+TP S+IPPLHHELT SPP LA+N IG QL+ GK+FIVKS+ LRRIIKELPIFQD+SVVCVG T S+IKFSIASKEI L     HC++VGFEEE
Subjt:  KLILRFETP-SQIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFEEE

Query:  VETQFQIILHPMLFFLDFTHKSNKIWFFKTKNNSHSVMSVPAYGFVGQYLIYFPP
        VETQFQIIL PMLFFL+FT+K+NK+WF+KTKNNS+SVM+VPA+G +GQY+IYFPP
Subjt:  VETQFQIILHPMLFFLDFTHKSNKIWFFKTKNNSHSVMSVPAYGFVGQYLIYFPP

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980102.2e-6864.73Show/hide
Query:  MFLVRLTQFEPLLDATSLLAQISNNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQTN
        MFLVRL QFEPL+DATSLLAQ++ +ADVKFTP  L +IVS+   P+FVATLQLS+  FTNFS D  H+ S  VSLQ FHDAMLD G FSSMTIHLLD TN
Subjt:  MFLVRLTQFEPLLDATSLLAQISNNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQTN

Query:  KLILRFETPS-QIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFEEE
        +++LRFETPS  +PPLHHEL LSPP  AEN    Q++ G +F V S+ELRRIIKELP+F  ++ V V  T S++KFSI SKEI LTK G HCK+VG+E E
Subjt:  KLILRFETPS-QIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFEEE

Query:  VETQFQIILHPMLFFLDFTHKSNK
        VET+ Q++L PM+FFL+FT+++NK
Subjt:  VETQFQIILHPMLFFLDFTHKSNK

A0A1S3CL88 uncharacterized protein LOC1035022502.8e-8767.19Show/hide
Query:  MFLVRLTQFEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQT
        MFLV+L  F+PLLDATS LAQIS +NAD+KFTP   ++I SH   PRF+ATLQLS  +FT FS D  + HS  VSL+SFHDA+LD G F+SMTIHLLD+T
Subjt:  MFLVRLTQFEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQT

Query:  NKLILRFETP-SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFE
        N++ILRF+TP S+I PLHHELTLSPP   +N IG+ +LD  KYFIVKSK LRRIIK+LPIFQ++S++ V  T SR+KFSIASKEI LT+ G HCK+ GFE
Subjt:  NKLILRFETP-SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFE

Query:  EEVETQFQIILHPMLFFLDFTHKSNKIWFFKTKNNSHSVMSVPAYGFVGQYLIYFP
        EEVETQFQIIL PM+FFL+FT+K+N++WF+KTKNN++++M VPAYG  GQY+IYFP
Subjt:  EEVETQFQIILHPMLFFLDFTHKSNKIWFFKTKNNSHSVMSVPAYGFVGQYLIYFP

A0A5D3BV00 Uncharacterized protein7.0e-5464.55Show/hide
Query:  MFLVRLTQFEPLLDATSLLAQISN-NADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQT
        MFLV+LT+FEPLLD+TS LAQ SN NAD+KF P  L+LIV +   PRF ATLQLS  +F+N+S D  H HS  VSL+SFHDAMLD GDFSSM+IHLLD+T
Subjt:  MFLVRLTQFEPLLDATSLLAQISN-NADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQT

Query:  NKLILRFETP-SQIPPLHHELTLSPPHLAENYI-GRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTK
        N++ LRF+TP SQI P HHELTLSPP   +  I   +LDL K+ IVKSK LRR+IKELPIF ++S++CV  T S+IKFSIASK I L++
Subjt:  NKLILRFETP-SQIPPLHHELTLSPPHLAENYI-GRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTK

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein6.5e-6867.13Show/hide
Query:  MFLVRLTQFEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQT
        MFLV+L  F+PLLDATS LAQIS +NAD+KFTP   ++I SH   PRF+ATLQLS  +FT FS D  + HS  VSL+SFHDA+LD G F+SMTIHLLD+T
Subjt:  MFLVRLTQFEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQT

Query:  NKLILRFETP-SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFE
        N++ILRF+TP S+I PLHHELTLSPP   +N IG+ +LD  KYFIVKSK LRRIIK+LPIFQ++S++ V  T SR+KFSIASKEI LT+ G HCK+ GFE
Subjt:  NKLILRFETP-SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFE

Query:  EEVETQFQIILHPMLF
        EEVETQFQIIL PM++
Subjt:  EEVETQFQIILHPMLF

A0A6J1KIW5 uncharacterized protein LOC1114948748.3e-5547.04Show/hide
Query:  MFLVRLTQFEPLLDATSLLAQISNNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQTN
        MFLVRL  F PL+D TS LAQI+  +D+ FTP  L L  S  P PRF+ATLQ+    FT +S   +  H   +SL+S HDA+LD G  S+MTIHLL+ TN
Subjt:  MFLVRLTQFEPLLDATSLLAQISNNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQTN

Query:  KLILRFETPSQIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFEEEV
         ++LRFETP+  P L H+  L PP   E  I  +++  K   + S++LR++IKELP+F  +S VCV  T SR++FSIAS+E+   K    C+++G + + 
Subjt:  KLILRFETPSQIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFEEEV

Query:  ETQFQIILHPMLFFLDFTHKSNKIWFFKTKNNSHSVMSVPAYGFVGQYLIYFP
         T+F+I+L+PMLFFL+ T+    +WF KT  N+H VM  P +    QY+IYFP
Subjt:  ETQFQIILHPMLFFLDFTHKSNKIWFFKTKNNSHSVMSVPAYGFVGQYLIYFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTGGTCAGGCTTACACAGTTTGAACCTCTTCTGGACGCAACCTCCTTACTGGCTCAAATTTCGAACAACGCCGACGTCAAATTCACGCCGTATTATCTCTACTT
AATCGTATCGCACCACCCTTGCCCTCGCTTCGTTGCAACACTTCAATTGTCCCAACCATTTTTCACCAACTTTTCCGCCGATCATCATCATCATCACTCTTTCAATGTTT
CCCTTCAATCCTTCCATGATGCTATGTTGGATGCTGGAGATTTTTCTTCAATGACAATCCATCTTTTGGACCAAACAAACAAATTGATCCTTAGATTTGAGACTCCAAGC
CAAATCCCACCTTTGCATCATGAATTGACATTGTCACCTCCCCATTTAGCTGAGAATTATATTGGCCGACAACTTGACTTGGGAAAATATTTCATAGTTAAATCTAAGGA
ATTAAGACGAATTATAAAAGAATTACCTATCTTCCAAGATAATTCAGTCGTTTGTGTTGGTGCAACCAAATCTCGAATCAAGTTCTCCATTGCATCTAAAGAGATTACTC
TTACTAAAGGGGGTCCACACTGTAAAATGGTAGGTTTTGAAGAAGAAGTTGAAACTCAATTCCAAATCATTCTCCATCCCATGTTGTTTTTCCTCGATTTTACACATAAA
TCCAATAAGATATGGTTTTTTAAGACAAAGAATAATTCTCATAGTGTAATGAGTGTCCCAGCTTATGGATTTGTTGGTCAATATCTAATCTACTTTCCCCCGGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTGGTCAGGCTTACACAGTTTGAACCTCTTCTGGACGCAACCTCCTTACTGGCTCAAATTTCGAACAACGCCGACGTCAAATTCACGCCGTATTATCTCTACTT
AATCGTATCGCACCACCCTTGCCCTCGCTTCGTTGCAACACTTCAATTGTCCCAACCATTTTTCACCAACTTTTCCGCCGATCATCATCATCATCACTCTTTCAATGTTT
CCCTTCAATCCTTCCATGATGCTATGTTGGATGCTGGAGATTTTTCTTCAATGACAATCCATCTTTTGGACCAAACAAACAAATTGATCCTTAGATTTGAGACTCCAAGC
CAAATCCCACCTTTGCATCATGAATTGACATTGTCACCTCCCCATTTAGCTGAGAATTATATTGGCCGACAACTTGACTTGGGAAAATATTTCATAGTTAAATCTAAGGA
ATTAAGACGAATTATAAAAGAATTACCTATCTTCCAAGATAATTCAGTCGTTTGTGTTGGTGCAACCAAATCTCGAATCAAGTTCTCCATTGCATCTAAAGAGATTACTC
TTACTAAAGGGGGTCCACACTGTAAAATGGTAGGTTTTGAAGAAGAAGTTGAAACTCAATTCCAAATCATTCTCCATCCCATGTTGTTTTTCCTCGATTTTACACATAAA
TCCAATAAGATATGGTTTTTTAAGACAAAGAATAATTCTCATAGTGTAATGAGTGTCCCAGCTTATGGATTTGTTGGTCAATATCTAATCTACTTTCCCCCGGTATGA
Protein sequenceShow/hide protein sequence
MFLVRLTQFEPLLDATSLLAQISNNADVKFTPYYLYLIVSHHPCPRFVATLQLSQPFFTNFSADHHHHHSFNVSLQSFHDAMLDAGDFSSMTIHLLDQTNKLILRFETPS
QIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVGFEEEVETQFQIILHPMLFFLDFTHK
SNKIWFFKTKNNSHSVMSVPAYGFVGQYLIYFPPV