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Clc06G04250 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G04250
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationClcChr06:4408464..4410193
RNA-Seq ExpressionClc06G04250
SyntenyClc06G04250
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN45638.2 hypothetical protein Csa_005465, partial [Cucumis sativus]1.2e-4585.45Show/hide
Query:  MFVFMLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPH
        MFVF+LDEIH FVDA+S LAGL YVF+LKFSP+MFSIM N TPS  CTIALQLFPPFFNQ YSCQQLHYSWIYIN FFPEMFHLERTGFSSLTFSFAD H
Subjt:  MFVFMLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPH

Query:  HADLTFRSAD
        HADLTF S D
Subjt:  HADLTFRSAD

TYK02997.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.4e-6279.11Show/hide
Query:  MFVFMLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPH
        MFVF+L+EIH FVDA+S+LAGL YVF+LKFSP+MFSIM N TPS  CTIALQLFPPFFNQ YSCQQLHYSWIYIN FFPEMF +ERTGFSSLTFSFAD  
Subjt:  MFVFMLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPH

Query:  HADLTFRSADGRLRAVDFPMYHSDESMDV--GEFDLGTFVSFSSREFINIVTLNNFDS
        HADLTF S DG LR +DFPMYHSD SMD    + D  TFVSFSS+EFINIVTLNNFDS
Subjt:  HADLTFRSADGRLRAVDFPMYHSDESMDV--GEFDLGTFVSFSSREFINIVTLNNFDS

XP_022958855.1 uncharacterized protein LOC111460009 [Cucurbita moschata]5.4e-3843.64Show/hide
Query:  IHEFVDAISILA-GLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLT--
        +H+ VDA S+LA   D +FD+KFSP MFSIM   TPSS C I LQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +P   D    
Subjt:  IHEFVDAISILA-GLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLT--

Query:  -----------------------------FRSADGRLRAVDFPMYHSDESMDVGEFDLGTFVSFSSREFINIVT-LNNFDSVMVTLTNSQVKFSYAGTDM
                                     F  ++G    V+ PM+ S + MDVG FD+GTFVS  S+EFINIVT  N+FD V+VTL NSQV FSY  T +
Subjt:  -----------------------------FRSADGRLRAVDFPMYHSDESMDVGEFDLGTFVSFSSREFINIVT-LNNFDSVMVTLTNSQVKFSYAGTDM

Query:  ILTQEKDVLLATLIHLKREKIDPYTSVYQPTTYICS
        +LT+E+   +   +    E +  +    QP T  C+
Subjt:  ILTQEKDVLLATLIHLKREKIDPYTSVYQPTTYICS

XP_023006011.1 uncharacterized protein LOC111498888 [Cucurbita maxima]7.5e-4045.76Show/hide
Query:  IHEFVDAISILA-GLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLT--
        +H+ VDA S+LA   D +FD+KFSP MFSIM   TPSSRC IALQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +P   D    
Subjt:  IHEFVDAISILA-GLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLT--

Query:  -----------------------------FRSADGRLRAVDFPMYHSDESMDVGEFDLGTFVSFSSREFINIVT-LNNFDSVMVTLTNSQVKFSYAGTDM
                                     F  ++G    V+ PM+ S + MDVG FD GTFVS  S+EFINIVT  N+FD V+VTLTNSQV FSY  T +
Subjt:  -----------------------------FRSADGRLRAVDFPMYHSDESMDVGEFDLGTFVSFSSREFINIVT-LNNFDSVMVTLTNSQVKFSYAGTDM

Query:  ILTQEKDVLLATLIHLKREKIDPYTSVYQPTTYICS
        ILTQE+   +   +    E +  +    QP T  C+
Subjt:  ILTQEKDVLLATLIHLKREKIDPYTSVYQPTTYICS

XP_023548336.1 uncharacterized protein LOC111807004 [Cucurbita pepo subsp. pepo]9.8e-4044.92Show/hide
Query:  IHEFVDAISILA-GLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLT--
        +H+ VDA S+LA   D +FD+KFSP MFSIM   TPSSRC IALQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +P   D    
Subjt:  IHEFVDAISILA-GLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLT--

Query:  -----------------------------FRSADGRLRAVDFPMYHSDESMDVGEFDLGTFVSFSSREFINIVT-LNNFDSVMVTLTNSQVKFSYAGTDM
                                     F  ++G    V+ PM+ S + MDVG FD GTFVS  S+EFINIVT  N+FD V+VTL NSQV FSY  T +
Subjt:  -----------------------------FRSADGRLRAVDFPMYHSDESMDVGEFDLGTFVSFSSREFINIVT-LNNFDSVMVTLTNSQVKFSYAGTDM

Query:  ILTQEKDVLLATLIHLKREKIDPYTSVYQPTTYICS
        +LTQE+   +   +    E +  +    QP T  C+
Subjt:  ILTQEKDVLLATLIHLKREKIDPYTSVYQPTTYICS

TrEMBL top hitse value%identityAlignment
A0A0A0K833 Uncharacterized protein1.2e-4685.59Show/hide
Query:  MFVFMLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPH
        MFVF+LDEIH FVDA+S LAGL YVF+LKFSP+MFSIM N TPS  CTIALQLFPPFFNQ YSCQQLHYSWIYIN FFPEMFHLERTGFSSLTFSFAD H
Subjt:  MFVFMLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPH

Query:  HADLTFRSADG
        HADLTF S DG
Subjt:  HADLTFRSADG

A0A5D3BU35 LINE-1 retrotransposable element ORF2 protein1.2e-6279.11Show/hide
Query:  MFVFMLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPH
        MFVF+L+EIH FVDA+S+LAGL YVF+LKFSP+MFSIM N TPS  CTIALQLFPPFFNQ YSCQQLHYSWIYIN FFPEMF +ERTGFSSLTFSFAD  
Subjt:  MFVFMLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPH

Query:  HADLTFRSADGRLRAVDFPMYHSDESMDV--GEFDLGTFVSFSSREFINIVTLNNFDS
        HADLTF S DG LR +DFPMYHSD SMD    + D  TFVSFSS+EFINIVTLNNFDS
Subjt:  HADLTFRSADGRLRAVDFPMYHSDESMDV--GEFDLGTFVSFSSREFINIVTLNNFDS

A0A6J1H4N0 uncharacterized protein LOC1114600092.6e-3843.64Show/hide
Query:  IHEFVDAISILA-GLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLT--
        +H+ VDA S+LA   D +FD+KFSP MFSIM   TPSS C I LQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +P   D    
Subjt:  IHEFVDAISILA-GLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLT--

Query:  -----------------------------FRSADGRLRAVDFPMYHSDESMDVGEFDLGTFVSFSSREFINIVT-LNNFDSVMVTLTNSQVKFSYAGTDM
                                     F  ++G    V+ PM+ S + MDVG FD+GTFVS  S+EFINIVT  N+FD V+VTL NSQV FSY  T +
Subjt:  -----------------------------FRSADGRLRAVDFPMYHSDESMDVGEFDLGTFVSFSSREFINIVT-LNNFDSVMVTLTNSQVKFSYAGTDM

Query:  ILTQEKDVLLATLIHLKREKIDPYTSVYQPTTYICS
        +LT+E+   +   +    E +  +    QP T  C+
Subjt:  ILTQEKDVLLATLIHLKREKIDPYTSVYQPTTYICS

A0A6J1KWL1 uncharacterized protein LOC1114988883.6e-4045.76Show/hide
Query:  IHEFVDAISILA-GLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLT--
        +H+ VDA S+LA   D +FD+KFSP MFSIM   TPSSRC IALQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +P   D    
Subjt:  IHEFVDAISILA-GLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLT--

Query:  -----------------------------FRSADGRLRAVDFPMYHSDESMDVGEFDLGTFVSFSSREFINIVT-LNNFDSVMVTLTNSQVKFSYAGTDM
                                     F  ++G    V+ PM+ S + MDVG FD GTFVS  S+EFINIVT  N+FD V+VTLTNSQV FSY  T +
Subjt:  -----------------------------FRSADGRLRAVDFPMYHSDESMDVGEFDLGTFVSFSSREFINIVT-LNNFDSVMVTLTNSQVKFSYAGTDM

Query:  ILTQEKDVLLATLIHLKREKIDPYTSVYQPTTYICS
        ILTQE+   +   +    E +  +    QP T  C+
Subjt:  ILTQEKDVLLATLIHLKREKIDPYTSVYQPTTYICS

A0A6J1L2R2 uncharacterized protein LOC1114993081.4e-2842.31Show/hide
Query:  MFVFMLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPH
        +F F+L+++ + VDA S++A  D + D+KFS +MF+IM +  P+    IAL L+P FF++ Y C +L  SW ++   FP M  +E +GF+SL+F+   P 
Subjt:  MFVFMLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPH

Query:  HADLTFRSADGRLRAVDFPMYHSDESMDVGEFDLGTFVSFSSREFINIVT-LNNFDSVMVTLTNSQVKFSYA-GTDMILTQE
         A+L F++ +G    V+F +  S + ++VG+FD  +FVS  S EF+NIVT  + FD V VT+T+++V FSYA   + ILTQE
Subjt:  HADLTFRSADGRLRAVDFPMYHSDESMDVGEFDLGTFVSFSSREFINIVT-LNNFDSVMVTLTNSQVKFSYA-GTDMILTQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGTCTTCATGCTGGACGAAATCCACGAGTTCGTGGACGCCATCTCCATCCTGGCCGGACTTGACTATGTATTCGATCTCAAGTTCTCACCAAAAATGTTCTCCAT
AATGGTCAACCGCACACCTTCCTCTCGTTGCACTATAGCCCTTCAACTATTCCCTCCATTCTTCAACCAAGGATATTCTTGCCAACAACTTCACTACTCATGGATTTACA
TCAACCAGTTTTTCCCCGAAATGTTCCATTTGGAACGAACCGGTTTTTCTTCACTCACTTTCTCTTTCGCAGATCCACATCATGCCGACCTCACATTTCGCAGTGCCGAT
GGCCGTCTTCGTGCAGTTGATTTCCCAATGTATCATTCGGACGAGTCGATGGATGTGGGTGAGTTCGATTTGGGAACTTTCGTCTCCTTCAGTTCACGAGAGTTCATTAA
CATTGTAACGTTGAATAATTTTGATTCTGTTATGGTCACACTCACGAATTCACAAGTCAAGTTCTCTTATGCGGGGACAGACATGATTCTTACTCAAGAGAAAGATGTCC
TCTTGGCAACACTCATACATCTCAAAAGGGAGAAGATTGACCCTTATACAAGCGTTTACCAACCTACTACTTATATTTGTTCTGCGCTCCAAATGTCAGTTTGTGAGATG
ACAGAGAGGGGTCTCATCTTGTTAGATGGGATTTCATCACCAGACCCAAAGAAGCTGGAGGGCTCGCACAAGGAGCCTAATCAACTTTGGAGAAGACCCATTGACAGTAA
ATATGTGGTGATTTCACCGGGTGCTATCCCATCGAAATGTAAACATATCAACTCAAAATCTCCATGGTTCAATATTGTAAAAATGGAGACCAATATTGGGAATCACATCC
AGCGAAAAGTGAGAAATGGAGCTAATACCCTCTTTTGGTTCCATCAATGGACCAATGAAACCCCATTATATCAGAAACTCTCCAGATTTTTTCATTTAGCTATCAATCCC
CTCATTACTGTCAGAGACGCTTGGAACACTACCAATAGTACCTGGGATCCACATTTTAGGCGATCTTTATTGCCCAGGGAGAGTCAAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCGTCTTCATGCTGGACGAAATCCACGAGTTCGTGGACGCCATCTCCATCCTGGCCGGACTTGACTATGTATTCGATCTCAAGTTCTCACCAAAAATGTTCTCCAT
AATGGTCAACCGCACACCTTCCTCTCGTTGCACTATAGCCCTTCAACTATTCCCTCCATTCTTCAACCAAGGATATTCTTGCCAACAACTTCACTACTCATGGATTTACA
TCAACCAGTTTTTCCCCGAAATGTTCCATTTGGAACGAACCGGTTTTTCTTCACTCACTTTCTCTTTCGCAGATCCACATCATGCCGACCTCACATTTCGCAGTGCCGAT
GGCCGTCTTCGTGCAGTTGATTTCCCAATGTATCATTCGGACGAGTCGATGGATGTGGGTGAGTTCGATTTGGGAACTTTCGTCTCCTTCAGTTCACGAGAGTTCATTAA
CATTGTAACGTTGAATAATTTTGATTCTGTTATGGTCACACTCACGAATTCACAAGTCAAGTTCTCTTATGCGGGGACAGACATGATTCTTACTCAAGAGAAAGATGTCC
TCTTGGCAACACTCATACATCTCAAAAGGGAGAAGATTGACCCTTATACAAGCGTTTACCAACCTACTACTTATATTTGTTCTGCGCTCCAAATGTCAGTTTGTGAGATG
ACAGAGAGGGGTCTCATCTTGTTAGATGGGATTTCATCACCAGACCCAAAGAAGCTGGAGGGCTCGCACAAGGAGCCTAATCAACTTTGGAGAAGACCCATTGACAGTAA
ATATGTGGTGATTTCACCGGGTGCTATCCCATCGAAATGTAAACATATCAACTCAAAATCTCCATGGTTCAATATTGTAAAAATGGAGACCAATATTGGGAATCACATCC
AGCGAAAAGTGAGAAATGGAGCTAATACCCTCTTTTGGTTCCATCAATGGACCAATGAAACCCCATTATATCAGAAACTCTCCAGATTTTTTCATTTAGCTATCAATCCC
CTCATTACTGTCAGAGACGCTTGGAACACTACCAATAGTACCTGGGATCCACATTTTAGGCGATCTTTATTGCCCAGGGAGAGTCAAAACTAG
Protein sequenceShow/hide protein sequence
MFVFMLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLTFRSAD
GRLRAVDFPMYHSDESMDVGEFDLGTFVSFSSREFINIVTLNNFDSVMVTLTNSQVKFSYAGTDMILTQEKDVLLATLIHLKREKIDPYTSVYQPTTYICSALQMSVCEM
TERGLILLDGISSPDPKKLEGSHKEPNQLWRRPIDSKYVVISPGAIPSKCKHINSKSPWFNIVKMETNIGNHIQRKVRNGANTLFWFHQWTNETPLYQKLSRFFHLAINP
LITVRDAWNTTNSTWDPHFRRSLLPRESQN