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Clc06G04260 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G04260
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationClcChr06:4430797..4432832
RNA-Seq ExpressionClc06G04260
SyntenyClc06G04260
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013723.1 hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-8366.14Show/hide
Query:  MFFVKLTDFEPLMEATSLLAQISKDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLI
        MF V+L  FEPL++ATSLL QISKDADV+FT   L +I S+ SPRF ATLQ+S R FTN+SV+H +SSKVSLESFHDA+LDGGSF SM+IH+L+  +Q+I
Subjt:  MFFVKLTDFEPLMEATSLLAQISKDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLI

Query:  LRFETSSQIFPPLHYELTLSPPQLAENNNIGGQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEEVE
        LR+E  S   PPLH EL LSPPQ AE+    GQ+E GK+F V SK LR+IIKELP+F DD +VR+  T++R+KFSIASKEIT+TKE  +CRIVG+E E E
Subjt:  LRFETSSQIFPPLHYELTLSPPQLAENNNIGGQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEEVE

Query:  TQFQIILRPMLFFLNFTYKANRVWFYKTKNNSYSVMSVPAYGISGQYVIYFPPL
        T+  I  RPM+FFLNFTYKANRVWFYKT  NS SV+SVPA+G+ GQYV+YFP L
Subjt:  TQFQIILRPMLFFLNFTYKANRVWFYKTKNNSYSVMSVPAYGISGQYVIYFPPL

XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]1.1e-7769.82Show/hide
Query:  MFFVKLTDFEPLMEATSLLAQISKDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLI
        MF V+L  FEPL++ATSLLAQ++KDADVKFTPL L IIVSNRSP+F ATLQLS R FTNFSV+H+ SSKVSL+ FHDA+LDGGSF SMTIHLLD T Q++
Subjt:  MFFVKLTDFEPLMEATSLLAQISKDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLI

Query:  LRFETSSQIFPPLHYELTLSPPQLAENNNIGGQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEEVE
        LRFET S   PPLH+EL LSPPQ AEN    GQ+E G +F V S+ELRRIIKELP+F  D+ V + VT S++KFSI SKEI LTKEG HC+IVG+E EVE
Subjt:  LRFETSSQIFPPLHYELTLSPPQLAENNNIGGQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEEVE

Query:  TQFQIILRPMLFFLNFTYKANR
        T+ Q++LRPM+FFLNFTY+AN+
Subjt:  TQFQIILRPMLFFLNFTYKANR

XP_008464344.1 PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]6.6e-9975.59Show/hide
Query:  MFFVKLTDFEPLMEATSLLAQISKD-ADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQL
        MF VKL +F+PL++ATS LAQIS D AD+KFTP K +II S+RSPRF ATLQLS ++FT FSV++DHSSKVSLESFHDA+LDGGSF SMTIHLLDKT Q+
Subjt:  MFFVKLTDFEPLMEATSLLAQISKD-ADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQL

Query:  ILRFETSSQIFPPLHYELTLSPPQLAENNNIG-GQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEE
        ILRF+T S    PLH+ELTLSPPQ AE+N IG  +L+E KYFIVKSK LRRIIK+LPIFQ+DS++ + VTNSR+KFSIASKEI LT EG HC+I GFEEE
Subjt:  ILRFETSSQIFPPLHYELTLSPPQLAENNNIG-GQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEE

Query:  VETQFQIILRPMLFFLNFTYKANRVWFYKTKNNSYSVMSVPAYGISGQYVIYFP
        VETQFQIIL PM+FFLNFTYKANRVWFYKTKNN+Y++M VPAYGI GQYVIYFP
Subjt:  VETQFQIILRPMLFFLNFTYKANRVWFYKTKNNSYSVMSVPAYGISGQYVIYFP

XP_031743957.1 uncharacterized protein LOC116404737 [Cucumis sativus]8.9e-8869.29Show/hide
Query:  MFFVKLTDFEPLMEATSLLAQIS-KDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQL
        MF VKLT+FEPL+++T  LA  S  +A VKFTP KL++IVSNR P F ATLQLS R+FTNFSV+H HSSKVSLESFHDA+LDGG F +M+IHLLDKT Q+
Subjt:  MFFVKLTDFEPLMEATSLLAQIS-KDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQL

Query:  ILRFETSSQIFPPLHYELTLSPPQLAENNNIG-GQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEE
        ILRF+T S    PLH ELTLSPPQ +E++ IG  +L   K+FIV SK LRR+IKELPIFQ+DS++ + VT S+IKFSIAS +I  + EG HCRI GFEEE
Subjt:  ILRFETSSQIFPPLHYELTLSPPQLAENNNIG-GQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEE

Query:  VETQFQIILRPMLFFLNFTYKANRVWFYKTKNNSYSVMSVPAYGISGQYVIYFP
        VETQFQI L PMLFFLNFTY+A+RVWFYKTKNN+Y+VM VPA+GI GQY IYFP
Subjt:  VETQFQIILRPMLFFLNFTYKANRVWFYKTKNNSYSVMSVPAYGISGQYVIYFP

XP_038875055.1 uncharacterized protein LOC120067580 [Benincasa hispida]4.7e-10578.26Show/hide
Query:  MFFVKLTDFEPLMEATSLLAQISKDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLI
        MF VKLT+FEPL++ATS LAQIS  ADVKFTPL+ Y+I    SPRF ATLQLS + FTN+SV+H+H+SKV LESFHDA+LDGGSF SMTIHLL+K  Q+I
Subjt:  MFFVKLTDFEPLMEATSLLAQISKDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLI

Query:  LRFETSSQIFPPLHYELTLSPPQLAENNNIGGQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEEVE
        LRF+T S   PPLH+ELT SPPQLA+ NNIGGQLEEGK+FIVKS+ LRRIIKELPIFQDDSVV +GVT+S+IKFSIASKEI L  +  HCRIVGFEEEVE
Subjt:  LRFETSSQIFPPLHYELTLSPPQLAENNNIGGQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEEVE

Query:  TQFQIILRPMLFFLNFTYKANRVWFYKTKNNSYSVMSVPAYGISGQYVIYFPP
        TQFQIILRPMLFFLNFTYKAN+VWFYKTKNNSYSVM+VPA+GI GQYVIYFPP
Subjt:  TQFQIILRPMLFFLNFTYKANRVWFYKTKNNSYSVMSVPAYGISGQYVIYFPP

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980105.3e-7869.82Show/hide
Query:  MFFVKLTDFEPLMEATSLLAQISKDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLI
        MF V+L  FEPL++ATSLLAQ++KDADVKFTPL L IIVSNRSP+F ATLQLS R FTNFSV+H+ SSKVSL+ FHDA+LDGGSF SMTIHLLD T Q++
Subjt:  MFFVKLTDFEPLMEATSLLAQISKDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLI

Query:  LRFETSSQIFPPLHYELTLSPPQLAENNNIGGQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEEVE
        LRFET S   PPLH+EL LSPPQ AEN    GQ+E G +F V S+ELRRIIKELP+F  D+ V + VT S++KFSI SKEI LTKEG HC+IVG+E EVE
Subjt:  LRFETSSQIFPPLHYELTLSPPQLAENNNIGGQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEEVE

Query:  TQFQIILRPMLFFLNFTYKANR
        T+ Q++LRPM+FFLNFTY+AN+
Subjt:  TQFQIILRPMLFFLNFTYKANR

A0A1S3CL88 uncharacterized protein LOC1035022503.2e-9975.59Show/hide
Query:  MFFVKLTDFEPLMEATSLLAQISKD-ADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQL
        MF VKL +F+PL++ATS LAQIS D AD+KFTP K +II S+RSPRF ATLQLS ++FT FSV++DHSSKVSLESFHDA+LDGGSF SMTIHLLDKT Q+
Subjt:  MFFVKLTDFEPLMEATSLLAQISKD-ADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQL

Query:  ILRFETSSQIFPPLHYELTLSPPQLAENNNIG-GQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEE
        ILRF+T S    PLH+ELTLSPPQ AE+N IG  +L+E KYFIVKSK LRRIIK+LPIFQ+DS++ + VTNSR+KFSIASKEI LT EG HC+I GFEEE
Subjt:  ILRFETSSQIFPPLHYELTLSPPQLAENNNIG-GQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEE

Query:  VETQFQIILRPMLFFLNFTYKANRVWFYKTKNNSYSVMSVPAYGISGQYVIYFP
        VETQFQIIL PM+FFLNFTYKANRVWFYKTKNN+Y++M VPAYGI GQYVIYFP
Subjt:  VETQFQIILRPMLFFLNFTYKANRVWFYKTKNNSYSVMSVPAYGISGQYVIYFP

A0A5D3BV00 Uncharacterized protein2.1e-5864.71Show/hide
Query:  MFFVKLTDFEPLMEATSLLAQISKD-ADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQL
        MF VKLT+FEPL+++TS LAQ S D AD+KF P KL++IV NRSPRFFATLQLS R+F+N+SV+H HSSKVSLESFHDA+LDGG F SM+IHLLDKT Q+
Subjt:  MFFVKLTDFEPLMEATSLLAQISKD-ADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQL

Query:  ILRFETSSQIFPPLHYELTLSPPQLAENNNIGGQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKE
         LRF+T S    P H+ELTLSPPQ  +      +L+  K+ IVKSK LRR+IKELPIF +DS++ + VT S+IKFSIASK I L++E
Subjt:  ILRFETSSQIFPPLHYELTLSPPQLAENNNIGGQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKE

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein2.9e-7672.9Show/hide
Query:  MFFVKLTDFEPLMEATSLLAQISKD-ADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQL
        MF VKL +F+PL++ATS LAQIS D AD+KFTP K +II S+RSPRF ATLQLS ++FT FSV++DHSSKVSLESFHDA+LDGGSF SMTIHLLDKT Q+
Subjt:  MFFVKLTDFEPLMEATSLLAQISKD-ADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQL

Query:  ILRFETSSQIFPPLHYELTLSPPQLAENNNIG-GQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEE
        ILRF+T S    PLH+ELTLSPPQ AE+N IG  +L+E KYFIVKSK LRRIIK+LPIFQ+DS++ + VTNSR+KFSIASKEI LT EG HC+I GFEEE
Subjt:  ILRFETSSQIFPPLHYELTLSPPQLAENNNIG-GQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEE

Query:  VETQFQIILRPMLF
        VETQFQIIL PM++
Subjt:  VETQFQIILRPMLF

A0A6J1KIW5 uncharacterized protein LOC1114948745.5e-5949.6Show/hide
Query:  MFFVKLTDFEPLMEATSLLAQISKDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLI
        MF V+L +F PL++ TS LAQI++++D+ FTPL L +  S  SPRF ATLQ+  + FT +SVN DH S++SLES HDALLD GS  +MTIHLL+ T  ++
Subjt:  MFFVKLTDFEPLMEATSLLAQISKDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLI

Query:  LRFETSSQIFPPLHYELTLSPPQLAENNNIGGQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEEVE
        LRFET +   P L ++  L PPQ         ++E  K   + S++LR++IKELP+F  DSV  + VT+SR++FSIAS+E+   KE   C I+G + +  
Subjt:  LRFETSSQIFPPLHYELTLSPPQLAENNNIGGQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEEVE

Query:  TQFQIILRPMLFFLNFTYKANRVWFYKTKNNSYSVMSVPAYGISGQYVIYFP
        T+F+I+L PMLFFLN TY    VWF+KT  N++ VM  P + I  QYVIYFP
Subjt:  TQFQIILRPMLFFLNFTYKANRVWFYKTKNNSYSVMSVPAYGISGQYVIYFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTCGTCAAGCTCACGGACTTTGAACCTCTTATGGAAGCAACCTCCTTATTGGCTCAAATTTCGAAGGATGCCGACGTGAAATTTACGCCGTTGAAGCTCTACAT
AATCGTCTCGAACCGTTCCCCTCGCTTCTTTGCAACGCTCCAATTGTCGGATCGATTCTTCACCAACTTTTCCGTCAATCATGATCACAGTTCCAAGGTTTCCCTTGAAT
CCTTCCATGATGCTTTGTTGGATGGCGGAAGCTTTTGTTCAATGACTATCCATCTTTTGGATAAAACAAAACAATTGATCCTTAGATTTGAGACTTCAAGTCAAATATTC
CCACCTTTGCATTATGAATTGACATTGTCACCTCCCCAATTAGCAGAGAATAATAATATAGGGGGCCAACTTGAAGAAGGAAAATATTTCATAGTTAAATCTAAGGAATT
AAGACGAATTATAAAAGAATTACCTATCTTCCAAGATGATTCAGTCGTTCGTATTGGTGTAACCAATTCTCGAATCAAGTTCTCCATTGCATCTAAGGAGATTACGCTTA
CTAAAGAGGGTCCACACTGTCGAATCGTAGGTTTTGAAGAAGAAGTTGAAACTCAATTTCAAATCATTCTCCGTCCCATGTTGTTTTTCCTCAATTTTACATATAAAGCA
AATAGGGTTTGGTTTTATAAGACAAAGAATAATTCTTATAGTGTAATGAGTGTCCCAGCTTATGGAATTTCTGGTCAATATGTAATCTATTTTCCCCCTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTCGTCAAGCTCACGGACTTTGAACCTCTTATGGAAGCAACCTCCTTATTGGCTCAAATTTCGAAGGATGCCGACGTGAAATTTACGCCGTTGAAGCTCTACAT
AATCGTCTCGAACCGTTCCCCTCGCTTCTTTGCAACGCTCCAATTGTCGGATCGATTCTTCACCAACTTTTCCGTCAATCATGATCACAGTTCCAAGGTTTCCCTTGAAT
CCTTCCATGATGCTTTGTTGGATGGCGGAAGCTTTTGTTCAATGACTATCCATCTTTTGGATAAAACAAAACAATTGATCCTTAGATTTGAGACTTCAAGTCAAATATTC
CCACCTTTGCATTATGAATTGACATTGTCACCTCCCCAATTAGCAGAGAATAATAATATAGGGGGCCAACTTGAAGAAGGAAAATATTTCATAGTTAAATCTAAGGAATT
AAGACGAATTATAAAAGAATTACCTATCTTCCAAGATGATTCAGTCGTTCGTATTGGTGTAACCAATTCTCGAATCAAGTTCTCCATTGCATCTAAGGAGATTACGCTTA
CTAAAGAGGGTCCACACTGTCGAATCGTAGGTTTTGAAGAAGAAGTTGAAACTCAATTTCAAATCATTCTCCGTCCCATGTTGTTTTTCCTCAATTTTACATATAAAGCA
AATAGGGTTTGGTTTTATAAGACAAAGAATAATTCTTATAGTGTAATGAGTGTCCCAGCTTATGGAATTTCTGGTCAATATGTAATCTATTTTCCCCCTCTTTGA
Protein sequenceShow/hide protein sequence
MFFVKLTDFEPLMEATSLLAQISKDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLILRFETSSQIF
PPLHYELTLSPPQLAENNNIGGQLEEGKYFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEGPHCRIVGFEEEVETQFQIILRPMLFFLNFTYKA
NRVWFYKTKNNSYSVMSVPAYGISGQYVIYFPPL