; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G04280 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G04280
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMannan endo-1,4-beta-mannosidase
Genome locationClcChr06:4446214..4446615
RNA-Seq ExpressionClc06G04280
SyntenyClc06G04280
Gene Ontology termsGO:0071704 - organic substance metabolic process (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016985 - mannan endo-1,4-beta-mannosidase activity (molecular function)
InterPro domainsIPR017853 - Glycoside hydrolase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646606.1 hypothetical protein Csa_005432 [Cucumis sativus]3.0e-5080.16Show/hide
Query:  MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTI
        M R +Q+I+ L   V +FSS S+YSLPLST GRWIIDS++G RVKLVCVNWPSHTQSML EGLNHRPLKELADEA+KL FNCVRLTYATHMFTRYANRT+
Subjt:  MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTI

Query:  KENFDLLDLKQAKAGFVQYNPFVLNK
        +ENFDLLDL+QAKAG  QYNPFVLNK
Subjt:  KENFDLLDLKQAKAGFVQYNPFVLNK

XP_011658389.1 glycosyl hydrolase 5 family protein [Cucumis sativus]3.0e-5080.16Show/hide
Query:  MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTI
        M R +Q+I+ L   V +FSS S+YSLPLST GRWIIDS++G RVKLVCVNWPSHTQSML EGLNHRPLKELADEA+KL FNCVRLTYATHMFTRYANRT+
Subjt:  MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTI

Query:  KENFDLLDLKQAKAGFVQYNPFVLNK
        +ENFDLLDL+QAKAG  QYNPFVLNK
Subjt:  KENFDLLDLKQAKAGFVQYNPFVLNK

XP_022158417.1 uncharacterized protein LOC111024908 [Momordica charantia]1.2e-5184.92Show/hide
Query:  MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTI
        MG  LQ IV L   VF+FSS+S++SLPLSTR RWIIDSKTG RVKLVCVNWPSHTQSMLAEGLNHRPLKELADEA+KL FNCVRLTYATHMFT YANRTI
Subjt:  MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTI

Query:  KENFDLLDLKQAKAGFVQYNPFVLNK
        +ENFDLLDLKQAKAG  QYNPFVLNK
Subjt:  KENFDLLDLKQAKAGFVQYNPFVLNK

XP_022958844.1 uncharacterized protein LOC111459997 [Cucurbita moschata]9.8e-5487.3Show/hide
Query:  MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTI
        M R LQ IVCL   VF+FSSLS+ SLPLSTRGRWIIDSKTG RVKLVCVNWPSHTQSML EGLNHRPLKELADEA+KL FNCVRLTYATHMFTRYANRTI
Subjt:  MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTI

Query:  KENFDLLDLKQAKAGFVQYNPFVLNK
        +ENFDLLDLK AKAG VQYNPFVLNK
Subjt:  KENFDLLDLKQAKAGFVQYNPFVLNK

XP_038900453.1 glycosyl hydrolase 5 family protein-like [Benincasa hispida]1.7e-5081.75Show/hide
Query:  MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTI
        MGR LQ IV L   VF F   S+YSLPLST+GRWI+DSKTG RVK VC NWPSHTQSMLAEGLNHRPLKELADEA+KL FNCVRLTYATHMFTRYANRTI
Subjt:  MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTI

Query:  KENFDLLDLKQAKAGFVQYNPFVLNK
        +ENFDLLDLKQAKAG  Q+NPF+LNK
Subjt:  KENFDLLDLKQAKAGFVQYNPFVLNK

TrEMBL top hitse value%identityAlignment
A0A0A0K853 Mannan endo-1,4-beta-mannosidase1.4e-5080.16Show/hide
Query:  MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTI
        M R +Q+I+ L   V +FSS S+YSLPLST GRWIIDS++G RVKLVCVNWPSHTQSML EGLNHRPLKELADEA+KL FNCVRLTYATHMFTRYANRT+
Subjt:  MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTI

Query:  KENFDLLDLKQAKAGFVQYNPFVLNK
        +ENFDLLDL+QAKAG  QYNPFVLNK
Subjt:  KENFDLLDLKQAKAGFVQYNPFVLNK

A0A1S3AV94 uncharacterized protein LOC1034830725.4e-5082.5Show/hide
Query:  IIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTIKENFDL
        + + L   VF+FS LS+ SLPLSTRGRWIIDS+TG RVKLVC+NWPSHTQSML EGLNHRPLK+LADEA+KL FNCVRLTYATHMFTRYANRTI+ENFDL
Subjt:  IIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTIKENFDL

Query:  LDLKQAKAGFVQYNPFVLNK
        LDLKQAKAG  QYNPFVLNK
Subjt:  LDLKQAKAGFVQYNPFVLNK

A0A5A7TMC9 Mannan endo-1,4-beta-mannosidase5.4e-5082.5Show/hide
Query:  IIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTIKENFDL
        + + L   VF+FS LS+ SLPLSTRGRWIIDS+TG RVKLVC+NWPSHTQSML EGLNHRPLK+LADEA+KL FNCVRLTYATHMFTRYANRTI+ENFDL
Subjt:  IIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTIKENFDL

Query:  LDLKQAKAGFVQYNPFVLNK
        LDLKQAKAG  QYNPFVLNK
Subjt:  LDLKQAKAGFVQYNPFVLNK

A0A6J1DX65 Mannan endo-1,4-beta-mannosidase5.8e-5284.92Show/hide
Query:  MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTI
        MG  LQ IV L   VF+FSS+S++SLPLSTR RWIIDSKTG RVKLVCVNWPSHTQSMLAEGLNHRPLKELADEA+KL FNCVRLTYATHMFT YANRTI
Subjt:  MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTI

Query:  KENFDLLDLKQAKAGFVQYNPFVLNK
        +ENFDLLDLKQAKAG  QYNPFVLNK
Subjt:  KENFDLLDLKQAKAGFVQYNPFVLNK

A0A6J1H6A6 Mannan endo-1,4-beta-mannosidase4.8e-5487.3Show/hide
Query:  MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTI
        M R LQ IVCL   VF+FSSLS+ SLPLSTRGRWIIDSKTG RVKLVCVNWPSHTQSML EGLNHRPLKELADEA+KL FNCVRLTYATHMFTRYANRTI
Subjt:  MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTI

Query:  KENFDLLDLKQAKAGFVQYNPFVLNK
        +ENFDLLDLK AKAG VQYNPFVLNK
Subjt:  KENFDLLDLKQAKAGFVQYNPFVLNK

SwissProt top hitse value%identityAlignment
C0HLA0 Glycosyl hydrolase 5 family protein4.9e-2447.86Show/hide
Query:  LTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTR--YANRTIKENFDLLD
        LT  + +  +  S+SLPL TRGRWI+D  TG RVKL CVNW  H +  L EGLN  P+  +A     L FNCVRLTY+ HM TR  Y N T+ + F  L+
Subjt:  LTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTR--YANRTIKENFDLLD

Query:  LKQAKAGFVQYNPFVLN
        L +A +G    NP +L+
Subjt:  LKQAKAGFVQYNPFVLN

Arabidopsis top hitse value%identityAlignment
AT1G13130.1 Cellulase (glycosyl hydrolase family 5) protein6.9e-2140.34Show/hide
Query:  CLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYA---NRTIKENFDL
        C  F+    +++ + S PLST  RWI+D + G RVKLVC NWPSH Q ++AEGL+ +P+  +A + V++ FNCVRLT+   + T      N T++++F  
Subjt:  CLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYA---NRTIKENFDL

Query:  LDLKQAKAGFVQYNPFVLN
        L L     GF   NP +++
Subjt:  LDLKQAKAGFVQYNPFVLN

AT3G26130.1 Cellulase (glycosyl hydrolase family 5) protein2.9e-1940.37Show/hide
Query:  LSSYSLPLSTRGRWII-DSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTR---YANRTIKENFDLLDLKQAKAGF
        +++++ P ST  RWI+ D   G RVKL CVNWPSH ++ +AEGL+ +PL  +A++ V + FNCVRLT+  ++ T     A  T++++     L +A +GF
Subjt:  LSSYSLPLSTRGRWII-DSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTR---YANRTIKENFDLLDLKQAKAGF

Query:  VQYNPFVLN
          +NP +L+
Subjt:  VQYNPFVLN

AT3G26140.1 Cellulase (glycosyl hydrolase family 5) protein6.4e-1944.12Show/hide
Query:  PLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYA---NRTIKENFDLLDLKQAKAGFVQYNPFV
        PLST  RWIID K G RVKL CVNWPSH Q ++AEGL+ + + +LA + + + FNCVR T+   + T      N T++++F  L L    +GF   NP +
Subjt:  PLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYA---NRTIKENFDLLDLKQAKAGFVQYNPFV

Query:  LN
        ++
Subjt:  LN

AT5G16700.1 Glycosyl hydrolase superfamily protein1.5e-2042.02Show/hide
Query:  CLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTR---YANRTIKENFDL
        CL F     +S  + S PLST+ RWI+D K G RVKL CVNWP+H Q  +AEGL+ +PL  ++ + V + FNCVRLT+   + T        T+K++F+ 
Subjt:  CLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTR---YANRTIKENFDL

Query:  LDLKQAKAGFVQYNPFVLN
        L L +   G   +NP +L+
Subjt:  LDLKQAKAGFVQYNPFVLN

AT5G17500.1 Glycosyl hydrolase superfamily protein5.8e-2038.71Show/hide
Query:  VCLTFAVFMFSSLSSYSL----PLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMF---TRYANRTIK
        + LT  +F+F SL S +L    PL T+ RWI+++K G RVKL C NWPSH + ++AEGL+ +P+  ++ +   + FNCVRLT+   +    T   N T+K
Subjt:  VCLTFAVFMFSSLSSYSL----PLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMF---TRYANRTIK

Query:  ENFDLLDLKQAKAGFVQYNPFVLN
        ++F+   L     G   +NP+++N
Subjt:  ENFDLLDLKQAKAGFVQYNPFVLN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAGTATTGCAAATCATTGTATGTTTAACCTTTGCCGTCTTTATGTTTTCATCCCTTTCAAGCTATTCCTTACCCTTATCAACTCGAGGAAGATGGATCATTGA
TTCTAAAACAGGATGGCGAGTGAAGCTTGTATGTGTGAATTGGCCTTCCCATACCCAAAGCATGTTGGCAGAAGGCCTAAACCACAGACCACTAAAAGAACTTGCTGACG
AGGCTGTCAAGTTGAATTTTAATTGTGTTCGTCTCACATATGCAACCCACATGTTCACTCGCTATGCTAATAGGACAATTAAAGAGAATTTTGACCTTCTAGACTTGAAA
CAGGCCAAAGCTGGATTCGTTCAATATAACCCTTTCGTGTTGAACAAATACAAACATAAAACATCAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGAGTATTGCAAATCATTGTATGTTTAACCTTTGCCGTCTTTATGTTTTCATCCCTTTCAAGCTATTCCTTACCCTTATCAACTCGAGGAAGATGGATCATTGA
TTCTAAAACAGGATGGCGAGTGAAGCTTGTATGTGTGAATTGGCCTTCCCATACCCAAAGCATGTTGGCAGAAGGCCTAAACCACAGACCACTAAAAGAACTTGCTGACG
AGGCTGTCAAGTTGAATTTTAATTGTGTTCGTCTCACATATGCAACCCACATGTTCACTCGCTATGCTAATAGGACAATTAAAGAGAATTTTGACCTTCTAGACTTGAAA
CAGGCCAAAGCTGGATTCGTTCAATATAACCCTTTCGTGTTGAACAAATACAAACATAAAACATCAAATTAA
Protein sequenceShow/hide protein sequence
MGRVLQIIVCLTFAVFMFSSLSSYSLPLSTRGRWIIDSKTGWRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAVKLNFNCVRLTYATHMFTRYANRTIKENFDLLDLK
QAKAGFVQYNPFVLNKYKHKTSN