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Clc06G04305 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G04305
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMannan endo-1,4-beta-mannosidase
Genome locationClcChr06:4453365..4453866
RNA-Seq ExpressionClc06G04305
SyntenyClc06G04305
Gene Ontology termsGO:0071704 - organic substance metabolic process (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016985 - mannan endo-1,4-beta-mannosidase activity (molecular function)
InterPro domainsIPR035992 - Ricin B-like lectins


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575267.1 hypothetical protein SDJN03_25906, partial [Cucurbita argyrosperma subsp. sororia]2.1e-3177.53Show/hide
Query:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN
        MLQDP+SNAS SY++YHPQSGQCAQ SN++T IFLS CSTSS+WSHGD G  IKM T GLCLKANGEG+G SLSSDCL Q SVWR ISN
Subjt:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN

XP_022157219.1 uncharacterized protein LOC111023982 [Momordica charantia]1.9e-3279.78Show/hide
Query:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN
        MLQDP+SNASSSYVMYHPQSGQC   SNDN  +FLSNC TSS+WSHG DGTPIKM T GLC+KANGE +G SLSSDCLGQ S WRAISN
Subjt:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN

XP_022158418.1 uncharacterized protein LOC111024912, partial [Momordica charantia]2.9e-3382.02Show/hide
Query:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN
        MLQDP+SNASSSYVMYHPQSGQC   SNDN GIFLS+CSTSS+WSHG DGT IK+ T GLCLKANGEG+  SLSSDCL QQSVWRAISN
Subjt:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN

XP_022958844.1 uncharacterized protein LOC111459997 [Cucurbita moschata]1.9e-3278.65Show/hide
Query:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN
        MLQDP+SNAS SY++YHPQSGQCAQ SN++T IFLS+CSTSS+WSHGD G  IKM T GLCLKANGEG+G SLSSDCL QQSVWR ISN
Subjt:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN

XP_038900453.1 glycosyl hydrolase 5 family protein-like [Benincasa hispida]1.4e-3276.4Show/hide
Query:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN
        MLQDP+SNAS+SYVMYHPQSGQC Q  +DN G+FL+NCST S+WSH  DG+PI++R+ GLCLKANGEG+GASLSSDCL QQS WRAISN
Subjt:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN

TrEMBL top hitse value%identityAlignment
A0A1S3BDI2 Mannan endo-1,4-beta-mannosidase1.3e-3176.4Show/hide
Query:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN
        MLQDP+SNAS SYV+YHPQSGQC +VSNDN  IFL+NCSTSS+WSH +D TPIKM   GLCLKA+GEG+ ASLS+DCLG+QSVW AISN
Subjt:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN

A0A5D3D4P4 Mannan endo-1,4-beta-mannosidase1.3e-3176.4Show/hide
Query:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN
        MLQDP+SNAS SYV+YHPQSGQC +VSNDN  IFL+NCSTSS+WSH +D TPIKM   GLCLKA+GEG+ ASLS+DCLG+QSVW AISN
Subjt:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN

A0A6J1DVV8 Mannan endo-1,4-beta-mannosidase9.0e-3379.78Show/hide
Query:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN
        MLQDP+SNASSSYVMYHPQSGQC   SNDN  +FLSNC TSS+WSHG DGTPIKM T GLC+KANGE +G SLSSDCLGQ S WRAISN
Subjt:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN

A0A6J1DW12 uncharacterized protein LOC1110249121.4e-3382.02Show/hide
Query:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN
        MLQDP+SNASSSYVMYHPQSGQC   SNDN GIFLS+CSTSS+WSHG DGT IK+ T GLCLKANGEG+  SLSSDCL QQSVWRAISN
Subjt:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN

A0A6J1H6A6 Mannan endo-1,4-beta-mannosidase9.0e-3378.65Show/hide
Query:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN
        MLQDP+SNAS SY++YHPQSGQCAQ SN++T IFLS+CSTSS+WSHGD G  IKM T GLCLKANGEG+G SLSSDCL QQSVWR ISN
Subjt:  MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAAGATCCAAGTTCCAATGCATCGTCTTCTTATGTTATGTATCATCCACAAAGTGGTCAATGTGCCCAAGTTTCAAATGACAATACTGGAATTTTTTTGAGTAA
TTGTTCCACCTCAAGTCAATGGAGTCATGGTGATGATGGCACTCCAATCAAAATGAGGACAAATGGTTTGTGTTTAAAGGCTAATGGCGAAGGTGTTGGAGCATCCCTCT
CAAGTGATTGTTTGGGTCAACAAAGTGTTTGGAGAGCAATTTCTAACGTAATCTTCATTTGGCCACTGTCACTCAAGATGGGAAGAGTCTTTGCTTGTAGGTTGAAAGCT
CCAATTCTTCAAAAATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCAAGATCCAAGTTCCAATGCATCGTCTTCTTATGTTATGTATCATCCACAAAGTGGTCAATGTGCCCAAGTTTCAAATGACAATACTGGAATTTTTTTGAGTAA
TTGTTCCACCTCAAGTCAATGGAGTCATGGTGATGATGGCACTCCAATCAAAATGAGGACAAATGGTTTGTGTTTAAAGGCTAATGGCGAAGGTGTTGGAGCATCCCTCT
CAAGTGATTGTTTGGGTCAACAAAGTGTTTGGAGAGCAATTTCTAACGTAATCTTCATTTGGCCACTGTCACTCAAGATGGGAAGAGTCTTTGCTTGTAGGTTGAAAGCT
CCAATTCTTCAAAAATTGTGA
Protein sequenceShow/hide protein sequence
MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKMRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISNVIFIWPLSLKMGRVFACRLKA
PILQKL