; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G04370 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G04370
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptiontRNA pseudouridine synthase
Genome locationClcChr06:4530309..4532877
RNA-Seq ExpressionClc06G04370
SyntenyClc06G04370
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0008033 - tRNA processing (biological process)
GO:0034196 - acylglycerol transport (biological process)
GO:1990052 - ER to chloroplast lipid transport (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0070300 - phosphatidic acid binding (molecular function)
GO:0106029 - tRNA pseudouridine synthase activity (molecular function)
InterPro domainsIPR001406 - Pseudouridine synthase I, TruA
IPR020094 - Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal
IPR020095 - Pseudouridine synthase I, TruA, C-terminal
IPR020097 - Pseudouridine synthase I, TruA, alpha/beta domain
IPR020103 - Pseudouridine synthase, catalytic domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK02989.1 protein TRIGALACTOSYLDIACYLGLYCEROL 4 [Cucumis melo var. makuwa]7.9e-17793.46Show/hide
Query:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV
        MRCWAVGSPVLPPISLP SP IP PNGASSSSSRGFPN EDSSYITE PFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV
Subjt:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV

Query:  GASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAAN
        GASRTDKGVHAWGQVAHF+TPFNYDSLESVHAALNGLLPVDIRVRE+SPA PDFHARFSTLSKVYHYKIYN  I+DPFQRCYTYHCVYKLNYAAM+EAAN
Subjt:  GASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAAN

Query:  YFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLV
        YFVGKHDFSAFTNAAHN+RVVNPVK IFRFDVIEMG LVQ+EVEGSGFLYRQVRNMVGLLVQIGKEA+PP+VVPKILASRDR+ELAKYASGVPPQGLCLV
Subjt:  YFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLV

Query:  SVNYKEDHLKLPSDCPGTSCG
        S+NYKEDHLKLPSDCPGTS G
Subjt:  SVNYKEDHLKLPSDCPGTSCG

XP_004138518.2 uncharacterized protein LOC101205797 [Cucumis sativus]1.8e-18192.54Show/hide
Query:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVE-DSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHL
        MRCWAVGSPVLPPISLPLSP IP PNGASSSSSRGFPN E D+SYI E  FP FKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHL
Subjt:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVE-DSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHL

Query:  VGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAA
        VGASRTDKGVHAWGQVAHF+TPFNYDSLESVHAALNGLLPVDIRVRE+SPAVPDFHARFSTLSKVYHYKIY+  I+DPFQRCYTYHCVYKLNYAAM+EAA
Subjt:  VGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAA

Query:  NYFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCL
        NYFVGKHDFSAFTNAAHNDRVVNPVK IFRFDVIEMG LVQ+EVEGSGFLYRQVRNMVGLLVQIGKEA+PP+VVPKILASRDRRELAKYASGVPPQGLCL
Subjt:  NYFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCL

Query:  VSVNYKEDHLKLPSDCPGTSCGRSRSVSKCKLPFY
        VS+NYKEDHLKLPSDCPGTS GR+RSVSKCK+PFY
Subjt:  VSVNYKEDHLKLPSDCPGTSCGRSRSVSKCKLPFY

XP_008458279.1 PREDICTED: tRNA pseudouridine synthase A 1 isoform X1 [Cucumis melo]3.9e-18493.11Show/hide
Query:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV
        MRCWAVGSPVLPPISLP SP IP PNGASSSSSRGFPN EDSSYITE PFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV
Subjt:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV

Query:  GASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAAN
        GASRTDKGVHAWGQVAHF+TPFNYDSLESVHAALNGLLPVDIRVRE+SPA PDFHARFSTLSKVYHYKIYN  I+DPFQRCYTYHCVYKLNYAAM+EAAN
Subjt:  GASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAAN

Query:  YFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLV
        YFVGKHDFSAFTNAAHN+RVVNPVK IFRFDVIEMG LVQ+EVEGSGFLYRQVRNMVGLLVQIGKEA+PP+VVPKILASRDR+ELAKYASGVPPQGLCLV
Subjt:  YFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLV

Query:  SVNYKEDHLKLPSDCPGTSCGRSRSVSKCKLPFY
        S+NYKEDHLKLPSDCPGTS GRSRSV KCK+PFY
Subjt:  SVNYKEDHLKLPSDCPGTSCGRSRSVSKCKLPFY

XP_038875516.1 tRNA pseudouridine synthase A 1 isoform X1 [Benincasa hispida]7.1e-18694.91Show/hide
Query:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV
        MRCWAVGSPVLPPISLPLSP+IPFPNGASSSSSRG PN EDSS I   PFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV
Subjt:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV

Query:  GASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAAN
        GASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPA PDFHARFSTLSKVYHYKIYN AILDPFQRCYTYHCVYKLNYAAM+EAAN
Subjt:  GASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAAN

Query:  YFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLV
        YFVGKHDFSAFTNAAHNDRVVNPVK IFRFDVI+MGPLVQ+EVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILAS+DRRELAKYASGVPPQGLCLV
Subjt:  YFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLV

Query:  SVNYKEDHLKLPSDCPGTSCGRSRSVSKCKLPFY
        S+NYKEDHLKLPSDCPGTS GR+RSVSKCKLPFY
Subjt:  SVNYKEDHLKLPSDCPGTSCGRSRSVSKCKLPFY

XP_038875517.1 tRNA pseudouridine synthase A 1 isoform X2 [Benincasa hispida]5.0e-17992.51Show/hide
Query:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV
        MRCWAVGSPVLPPISLPLSP+IPFPNGASSSSSRG PN EDSS I   PFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV
Subjt:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV

Query:  GASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAAN
        GASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPA PDFHARFSTLSKVYHYKIYN AILDPFQRCYTYHCVYKLNYAAM+EAAN
Subjt:  GASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAAN

Query:  YFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLV
        YFVGKHDFSAFTNAAHNDRVVNPVK          GPLVQ+EVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILAS+DRRELAKYASGVPPQGLCLV
Subjt:  YFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLV

Query:  SVNYKEDHLKLPSDCPGTSCGRSRSVSKCKLPFY
        S+NYKEDHLKLPSDCPGTS GR+RSVSKCKLPFY
Subjt:  SVNYKEDHLKLPSDCPGTSCGRSRSVSKCKLPFY

TrEMBL top hitse value%identityAlignment
A0A0A0KB67 tRNA pseudouridine synthase2.3e-17492.86Show/hide
Query:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVE-DSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHL
        MRCWAVGSPVLPPISLPLSP IP PNGASSSSSRGFPN E D+SYI E  FP FKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHL
Subjt:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVE-DSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHL

Query:  VGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAA
        VGASRTDKGVHAWGQVAHF+TPFNYDSLESVHAALNGLLPVDIRVRE+SPAVPDFHARFSTLSKVYHYKIY+  I+DPFQRCYTYHCVYKLNYAAM+EAA
Subjt:  VGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAA

Query:  NYFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCL
        NYFVGKHDFSAFTNAAHNDRVVNPVK IFRFDVIEMG LVQ+EVEGSGFLYRQVRNMVGLLVQIGKEA+PP+VVPKILASRDRRELAKYASGVPPQGLCL
Subjt:  NYFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCL

Query:  VSVNYKEDHLKLPSDCPGTSCG
        VS+NYKEDHLKLPSDCPGTS G
Subjt:  VSVNYKEDHLKLPSDCPGTSCG

A0A1S3C7L6 tRNA pseudouridine synthase1.9e-18493.11Show/hide
Query:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV
        MRCWAVGSPVLPPISLP SP IP PNGASSSSSRGFPN EDSSYITE PFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV
Subjt:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV

Query:  GASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAAN
        GASRTDKGVHAWGQVAHF+TPFNYDSLESVHAALNGLLPVDIRVRE+SPA PDFHARFSTLSKVYHYKIYN  I+DPFQRCYTYHCVYKLNYAAM+EAAN
Subjt:  GASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAAN

Query:  YFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLV
        YFVGKHDFSAFTNAAHN+RVVNPVK IFRFDVIEMG LVQ+EVEGSGFLYRQVRNMVGLLVQIGKEA+PP+VVPKILASRDR+ELAKYASGVPPQGLCLV
Subjt:  YFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLV

Query:  SVNYKEDHLKLPSDCPGTSCGRSRSVSKCKLPFY
        S+NYKEDHLKLPSDCPGTS GRSRSV KCK+PFY
Subjt:  SVNYKEDHLKLPSDCPGTSCGRSRSVSKCKLPFY

A0A5D3BY40 Protein TRIGALACTOSYLDIACYLGLYCEROL 43.8e-17793.46Show/hide
Query:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV
        MRCWAVGSPVLPPISLP SP IP PNGASSSSSRGFPN EDSSYITE PFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV
Subjt:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV

Query:  GASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAAN
        GASRTDKGVHAWGQVAHF+TPFNYDSLESVHAALNGLLPVDIRVRE+SPA PDFHARFSTLSKVYHYKIYN  I+DPFQRCYTYHCVYKLNYAAM+EAAN
Subjt:  GASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAAN

Query:  YFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLV
        YFVGKHDFSAFTNAAHN+RVVNPVK IFRFDVIEMG LVQ+EVEGSGFLYRQVRNMVGLLVQIGKEA+PP+VVPKILASRDR+ELAKYASGVPPQGLCLV
Subjt:  YFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLV

Query:  SVNYKEDHLKLPSDCPGTSCG
        S+NYKEDHLKLPSDCPGTS G
Subjt:  SVNYKEDHLKLPSDCPGTSCG

A0A6J1L0L1 tRNA pseudouridine synthase1.5e-16886.23Show/hide
Query:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV
        M CWAVGS VLP +  PLSPSIP   G  SS+ RGFPN EDSS + E  FPSFKWRL+IAYDGTRYAGWQYQRSPPTIQCLIEEAL GAT+LERKDLHLV
Subjt:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLV

Query:  GASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAAN
        GASRTDKGVHAWGQVAHFITPFNYDSL+ +HAALNGLLP DIRVREISPAVPDFHARFSTLSKVYHYKIYN AILDPFQRCYTYHCVYKLNYAAM+EAAN
Subjt:  GASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAAN

Query:  YFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLV
        YFVGKHDFSAF N AHNDRVVNPVK IFRFDVIEMG L+Q+EVEGSGFLYRQVRNMV LL+QIGKEAIPPDVVPKILASRDR+ LAKY + +PPQGLCLV
Subjt:  YFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLV

Query:  SVNYKEDHLKLPSDCPGTSCGRSRSVSKCKLPFY
         +NYKEDHLKLPSDCPGTS GRS SVSKCKLPFY
Subjt:  SVNYKEDHLKLPSDCPGTSCGRSRSVSKCKLPFY

A0A6J1L2M8 tRNA pseudouridine synthase4.7e-16785.71Show/hide
Query:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFP--NVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLH
        M CWAVGS VLP +  PLSPSIP   G  SS+ RGFP  N EDSS + E  FPSFKWRL+IAYDGTRYAGWQYQRSPPTIQCLIEEAL GAT+LERKDLH
Subjt:  MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFP--NVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLH

Query:  LVGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREA
        LVGASRTDKGVHAWGQVAHFITPFNYDSL+ +HAALNGLLP DIRVREISPAVPDFHARFSTLSKVYHYKIYN AILDPFQRCYTYHCVYKLNYAAM+EA
Subjt:  LVGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREA

Query:  ANYFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLC
        ANYFVGKHDFSAF N AHNDRVVNPVK IFRFDVIEMG L+Q+EVEGSGFLYRQVRNMV LL+QIGKEAIPPDVVPKILASRDR+ LAKY + +PPQGLC
Subjt:  ANYFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLC

Query:  LVSVNYKEDHLKLPSDCPGTSCGRSRSVSKCKLPFY
        LV +NYKEDHLKLPSDCPGTS GRS SVSKCKLPFY
Subjt:  LVSVNYKEDHLKLPSDCPGTSCGRSRSVSKCKLPFY

SwissProt top hitse value%identityAlignment
A3DJK8 tRNA pseudouridine synthase A4.4e-4541.77Show/hide
Query:  RLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFH
        +L+I YDGT Y GWQ Q++  T+Q  IE A+ G T    + + L+GASRTD GVHA GQVA+FIT       +    ALN +LP DI ++E      DFH
Subjt:  RLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFH

Query:  ARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRN
        AR+    K Y Y IYNS       R  TYH  +KL++ +M+ AA+YF+G HDFSAF ++  + +    V+ I    +     +V+ E+ G GFLY  VR 
Subjt:  ARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRN

Query:  MVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLVSVNY
        +VG L+++G   I  D +P+I+ SR R+   + A   P +GL LV V Y
Subjt:  MVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLVSVNY

A4J151 tRNA pseudouridine synthase A5.7e-4541.04Show/hide
Query:  RLLIAYDGTRYAGWQYQRSP--PTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPD
        +L +AYDGT Y G+Q QR     TIQ  +E+AL   + + +  + ++GA RTD GVHA GQV +F +       E    ALN LLP DI+V +      D
Subjt:  RLLIAYDGTRYAGWQYQRSP--PTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPD

Query:  FHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQV
        FHARFS ++K Y Y IY+  ++ PF R Y YH   +L+  AM+E A Y +G +DF +F   A    V + ++ I+R D+IE  P++ + + G+GFLY  V
Subjt:  FHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQV

Query:  RNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLVSVNY
        R + G L+ IG   I P+ + KI+ S++R      A   PPQGLCL+ V Y
Subjt:  RNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLVSVNY

B1I1B5 tRNA pseudouridine synthase A7.2e-4843.43Show/hide
Query:  RLLIAYDGTRYAGWQYQRSP--PTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPD
        RL +AYDGT Y G+Q Q     PTIQ  +E  L    +L    L + GASRTD GVHA GQV +F+T       E + AALNG+LP DI   +      D
Subjt:  RLLIAYDGTRYAGWQYQRSP--PTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPD

Query:  FHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQV
        FHAR+S ++K Y Y +YN  +  PFQR Y+ H    L+  AMR AA + +G+HDFS F  A     V + V+ + R D+    PLV++     GFLY  V
Subjt:  FHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQV

Query:  RNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLVSVNY
        R M G L+++G E + P+ +P I+AS DR   A+    VPP GLCL  V Y
Subjt:  RNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLVSVNY

Q6MEE7 tRNA pseudouridine synthase A 13.3e-5341.18Show/hide
Query:  WRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDF
        ++L IAYDGT Y+GWQ Q +  +IQ  I+EAL     L+++ + LVG+ RTD GVHA GQVAHF    +Y  L  +H +LNGLLP DIR++ + P  P F
Subjt:  WRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDF

Query:  HARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVV-NPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQV
        H+++S + K YHY ++ + ++DPFQR Y++H   K++   +++AA  F G HDF++F N AH      NPV+ ++R D+      +++E EG GFLY+ V
Subjt:  HARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVV-NPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQV

Query:  RNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLVSVNYKEDH
        RN+VG L+ +       + + +I A+++RR+ +  A   PP+GL L+ V Y+ ++
Subjt:  RNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLVSVNYKEDH

Q8R7Y7 tRNA pseudouridine synthase A1.8e-4644.35Show/hide
Query:  LLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHA
        L+I YDGT Y GWQYQ++  T+Q ++E+A+    K+  + ++L+G+SRTD GVHA  QVA+F T       E +  ALN +LP D+ V +       FHA
Subjt:  LLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHA

Query:  RFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNM
        R+S  SK Y Y I N     P  R Y +H  Y L+  AM++AA +F G HDFSAF   A  ++ VNPVK IF   V + G L++IEVE  GFLY  VR +
Subjt:  RFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNM

Query:  VGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLVSVNY
        VG LV +G   I    +P I+ S+DR    K     PPQGL LV + Y
Subjt:  VGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLVSVNY

Arabidopsis top hitse value%identityAlignment
AT1G34150.1 Pseudouridine synthase family protein9.8e-1629.74Show/hide
Query:  LLIAYDGTRYAGWQYQ-RSPPTIQCLIEEALIGATKL--ERKDLHLVGASRTDKGVHAWGQVAHFITPFNY-----DSLESVHA------------ALNG
        L I Y G R+ G+  + +  P+I+  + +AL     L  ++KD       RTDKGV + GQV              DS   V+              LN 
Subjt:  LLIAYDGTRYAGWQYQ-RSPPTIQCLIEEALIGATKL--ERKDLHLVGASRTDKGVHAWGQVAHFITPFNY-----DSLESVHA------------ALNG

Query:  LLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNA------AHNDRV----VNPVKD
         LP DIRV   SPA  DFHARFS  ++ Y Y  +                   LN +AM  A   F+G+HDF  F          +  RV    V+P ++
Subjt:  LLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNA------AHNDRV----VNPVKD

Query:  IFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKY--ASGVP
            D      L    + GS FL+ Q+R MV +L  IG+     DV+  +L ++      +Y  AS +P
Subjt:  IFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKY--ASGVP

AT3G06950.1 Pseudouridine synthase family protein5.0e-12166.25Show/hide
Query:  PLSPSIPFPNG-ASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
        P  P   F NG  SS  +    N+  S  +++S   ++KWRL+IAYDGTR+AGWQYQ SPPTIQ ++E+ALI  T+L RK+L L+GA RTD GVHAWGQV
Subjt:  PLSPSIPFPNG-ASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV

Query:  AHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAA
        AHF+TPFNY SL+S HAALNGLLP DIRVRE+S AVP+FHARFS  SKVY Y+IYN   +DPFQR + YHC YKLN + MREAAN FVGKHDFSAF NA 
Subjt:  AHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAA

Query:  HNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYAS-GVPPQGLCLVSVNYKEDHLKLPSD
          D V +P+K I RFDVI+MG L+Q+EVEGSGFLYRQVRNMV LL+QIGKEA+  D+VP IL ++DRR LAKY S    P GLCLVSV YKEDHLKLP D
Subjt:  HNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYAS-GVPPQGLCLVSVNYKEDHLKLPSD

Query:  CPGTSCGRSRSVSKCKLPFY
        CP TS GR  +++KCKLPFY
Subjt:  CPGTSCGRSRSVSKCKLPFY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTGCTGGGCGGTGGGTTCGCCTGTTCTTCCTCCCATTTCCCTTCCCCTTTCACCAAGCATTCCATTTCCCAATGGCGCTTCATCTTCCTCCAGTCGTGGATTCCC
GAATGTGGAGGATTCCTCTTATATCACAGAGTCCCCTTTCCCCAGCTTCAAATGGCGATTGCTCATCGCTTATGACGGTACCCGATACGCAGGCTGGCAATATCAGCGGT
CACCACCCACTATCCAGTGCCTCATTGAAGAAGCCTTGATTGGAGCAACAAAGCTTGAAAGGAAGGATCTCCATTTAGTTGGTGCGAGCAGAACAGATAAAGGAGTTCAT
GCCTGGGGTCAGGTGGCTCACTTTATTACGCCATTTAACTACGATAGCTTGGAAAGCGTTCATGCTGCACTGAATGGTCTTCTTCCTGTGGATATAAGAGTTCGAGAGAT
CAGTCCCGCTGTGCCTGACTTTCATGCTCGGTTTTCTACATTAAGCAAGGTTTATCACTACAAGATATATAATAGCGCCATCTTGGATCCATTTCAGCGTTGCTACACTT
ACCATTGTGTTTATAAACTCAACTATGCAGCCATGAGAGAAGCTGCAAATTATTTCGTTGGGAAGCATGATTTTTCTGCTTTTACGAATGCAGCACATAATGATCGAGTG
GTAAATCCAGTGAAGGACATTTTTCGTTTTGATGTCATAGAAATGGGACCTCTTGTGCAGATAGAAGTTGAGGGTTCTGGGTTCTTATATAGACAAGTTCGGAATATGGT
TGGCTTGTTGGTTCAAATTGGAAAAGAAGCAATTCCTCCTGATGTTGTTCCTAAGATTTTGGCTTCTCGAGATCGCAGAGAGCTTGCGAAGTATGCTTCGGGAGTTCCTC
CACAGGGGCTCTGTCTTGTGAGTGTTAATTATAAAGAGGACCATTTAAAGCTTCCATCTGATTGCCCTGGGACTAGTTGTGGTAGGAGTCGTAGTGTGAGCAAATGTAAA
CTCCCTTTTTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGTGCTGGGCGGTGGGTTCGCCTGTTCTTCCTCCCATTTCCCTTCCCCTTTCACCAAGCATTCCATTTCCCAATGGCGCTTCATCTTCCTCCAGTCGTGGATTCCC
GAATGTGGAGGATTCCTCTTATATCACAGAGTCCCCTTTCCCCAGCTTCAAATGGCGATTGCTCATCGCTTATGACGGTACCCGATACGCAGGCTGGCAATATCAGCGGT
CACCACCCACTATCCAGTGCCTCATTGAAGAAGCCTTGATTGGAGCAACAAAGCTTGAAAGGAAGGATCTCCATTTAGTTGGTGCGAGCAGAACAGATAAAGGAGTTCAT
GCCTGGGGTCAGGTGGCTCACTTTATTACGCCATTTAACTACGATAGCTTGGAAAGCGTTCATGCTGCACTGAATGGTCTTCTTCCTGTGGATATAAGAGTTCGAGAGAT
CAGTCCCGCTGTGCCTGACTTTCATGCTCGGTTTTCTACATTAAGCAAGGTTTATCACTACAAGATATATAATAGCGCCATCTTGGATCCATTTCAGCGTTGCTACACTT
ACCATTGTGTTTATAAACTCAACTATGCAGCCATGAGAGAAGCTGCAAATTATTTCGTTGGGAAGCATGATTTTTCTGCTTTTACGAATGCAGCACATAATGATCGAGTG
GTAAATCCAGTGAAGGACATTTTTCGTTTTGATGTCATAGAAATGGGACCTCTTGTGCAGATAGAAGTTGAGGGTTCTGGGTTCTTATATAGACAAGTTCGGAATATGGT
TGGCTTGTTGGTTCAAATTGGAAAAGAAGCAATTCCTCCTGATGTTGTTCCTAAGATTTTGGCTTCTCGAGATCGCAGAGAGCTTGCGAAGTATGCTTCGGGAGTTCCTC
CACAGGGGCTCTGTCTTGTGAGTGTTAATTATAAAGAGGACCATTTAAAGCTTCCATCTGATTGCCCTGGGACTAGTTGTGGTAGGAGTCGTAGTGTGAGCAAATGTAAA
CTCCCTTTTTATTGA
Protein sequenceShow/hide protein sequence
MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLVGASRTDKGVH
AWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRV
VNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLVSVNYKEDHLKLPSDCPGTSCGRSRSVSKCK
LPFY