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Clc06G04830 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G04830
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein TAPETUM DETERMINANT 1-like
Genome locationClcChr06:5000248..5003119
RNA-Seq ExpressionClc06G04830
SyntenyClc06G04830
Gene Ontology termsGO:0001709 - cell fate determination (biological process)
GO:0043086 - negative regulation of catalytic activity (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0046910 - pectinesterase inhibitor activity (molecular function)
InterPro domainsIPR006501 - Pectinesterase inhibitor domain
IPR034086 - Pectinesterase inhibitor, plant
IPR035513 - Invertase/pectin methylesterase inhibitor domain superfamily
IPR040361 - Tapetum determinant 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647076.1 hypothetical protein Csa_023043 [Cucumis sativus]5.6e-6684.62Show/hide
Query:  DTGSPNVITTTVCPRTRNSSLCRTVLKPAGKSD-ALLKVANYTLTLAHTTAVEGLRHAQRLAAAATNPLLKQRYSECSRRFDFVAKGLEEAKAALVKGGY
        DTGSPNV+TTT+CP+TRNS+ C+TVLKP GKSD ALLKVANYTLT AHTT VEGL HAQRLA  AT+PLLKQRYSECSRRFDFV KGLEEA  AL KGGY
Subjt:  DTGSPNVITTTVCPRTRNSSLCRTVLKPAGKSD-ALLKVANYTLTLAHTTAVEGLRHAQRLAAAATNPLLKQRYSECSRRFDFVAKGLEEAKAALVKGGY

Query:  IPLSHATGATVVEADRCVKTFKKPPREPSKLPEKAKKIGDICDIAVSVSNILAEDY
        IPLSHATGA VVEADRCV  FKKPP EPSKLPEKAK IGDICDIAVSVSNIL EDY
Subjt:  IPLSHATGATVVEADRCVKTFKKPPREPSKLPEKAKKIGDICDIAVSVSNILAEDY

XP_004148232.1 pectinesterase inhibitor [Cucumis sativus]1.4e-6984.76Show/hide
Query:  FIVVLLHADTGSPNVITTTVCPRTRNSSLCRTVLKPAGKSD-ALLKVANYTLTLAHTTAVEGLRHAQRLAAAATNPLLKQRYSECSRRFDFVAKGLEEAK
        F VVLLHADTGSPNV+TTT+CP+TRNS+ C+TVLKP GKSD ALLKVANYTLT AHTT VEGL HAQRLA  AT+PLLKQRYSECSRRFDFV KGLEEA 
Subjt:  FIVVLLHADTGSPNVITTTVCPRTRNSSLCRTVLKPAGKSD-ALLKVANYTLTLAHTTAVEGLRHAQRLAAAATNPLLKQRYSECSRRFDFVAKGLEEAK

Query:  AALVKGGYIPLSHATGATVVEADRCVKTFKKPPREPSKLPEKAKKIGDICDIAVSVSNILAEDY
         AL KGGYIPLSHATGA VVEADRCV  FKKPP EPSKLPEKAK IGDICDIAVSVSNIL EDY
Subjt:  AALVKGGYIPLSHATGATVVEADRCVKTFKKPPREPSKLPEKAKKIGDICDIAVSVSNILAEDY

XP_008458686.1 PREDICTED: pectinesterase inhibitor-like [Cucumis melo]1.2e-6582.32Show/hide
Query:  FIVVLLHADTGSPNVITTTVCPRTRNSSLCRTVLKPAGKSD-ALLKVANYTLTLAHTTAVEGLRHAQRLAAAATNPLLKQRYSECSRRFDFVAKGLEEAK
        F VVLLHADTGSPNVIT+T+CP+TRNS+LC+TVLKP GKSD ALLKVANY+LTLAHTT VEGL+HAQRLA  AT+PLLKQRYSECSRRFD + KGLEEA 
Subjt:  FIVVLLHADTGSPNVITTTVCPRTRNSSLCRTVLKPAGKSD-ALLKVANYTLTLAHTTAVEGLRHAQRLAAAATNPLLKQRYSECSRRFDFVAKGLEEAK

Query:  AALVKGGYIPLSHATGATVVEADRCVKTFKKPPREPSKLPEKAKKIGDICDIAVSVSNILAEDY
        AAL KG YIPLSHATGA VV+AD CV  FKK P EPSKLPEKAK IGDICDIAVSVSNIL EDY
Subjt:  AALVKGGYIPLSHATGATVVEADRCVKTFKKPPREPSKLPEKAKKIGDICDIAVSVSNILAEDY

XP_022138822.1 protein TAPETUM DETERMINANT 1-like [Momordica charantia]3.5e-3683.52Show/hide
Query:  CSNRDISISQSKDSTSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSFIVVL
        CSNRDISISQSKDST+GIP++IVQI NTCLS +CAPS+I LHCGWFASAKIVNP IFKR+FYDDCLVNGGKPL IS+TIRFTYSNSF+  L
Subjt:  CSNRDISISQSKDSTSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSFIVVL

XP_038876241.1 protein TAPETUM DETERMINANT 1-like [Benincasa hispida]2.8e-4188.42Show/hide
Query:  MIKGCSNRDISISQSKDSTSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSFIVVL
        M + CSN+DISISQSKDSTSGIPEFIVQI NTCLS++CAPSDIHLHCGWFASAK+VNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSF+  L
Subjt:  MIKGCSNRDISISQSKDSTSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSFIVVL

TrEMBL top hitse value%identityAlignment
A0A0A0KHY0 PMEI domain-containing protein6.9e-7084.76Show/hide
Query:  FIVVLLHADTGSPNVITTTVCPRTRNSSLCRTVLKPAGKSD-ALLKVANYTLTLAHTTAVEGLRHAQRLAAAATNPLLKQRYSECSRRFDFVAKGLEEAK
        F VVLLHADTGSPNV+TTT+CP+TRNS+ C+TVLKP GKSD ALLKVANYTLT AHTT VEGL HAQRLA  AT+PLLKQRYSECSRRFDFV KGLEEA 
Subjt:  FIVVLLHADTGSPNVITTTVCPRTRNSSLCRTVLKPAGKSD-ALLKVANYTLTLAHTTAVEGLRHAQRLAAAATNPLLKQRYSECSRRFDFVAKGLEEAK

Query:  AALVKGGYIPLSHATGATVVEADRCVKTFKKPPREPSKLPEKAKKIGDICDIAVSVSNILAEDY
         AL KGGYIPLSHATGA VVEADRCV  FKKPP EPSKLPEKAK IGDICDIAVSVSNIL EDY
Subjt:  AALVKGGYIPLSHATGATVVEADRCVKTFKKPPREPSKLPEKAKKIGDICDIAVSVSNILAEDY

A0A1S3C7Z4 pectinesterase inhibitor-like6.0e-6682.32Show/hide
Query:  FIVVLLHADTGSPNVITTTVCPRTRNSSLCRTVLKPAGKSD-ALLKVANYTLTLAHTTAVEGLRHAQRLAAAATNPLLKQRYSECSRRFDFVAKGLEEAK
        F VVLLHADTGSPNVIT+T+CP+TRNS+LC+TVLKP GKSD ALLKVANY+LTLAHTT VEGL+HAQRLA  AT+PLLKQRYSECSRRFD + KGLEEA 
Subjt:  FIVVLLHADTGSPNVITTTVCPRTRNSSLCRTVLKPAGKSD-ALLKVANYTLTLAHTTAVEGLRHAQRLAAAATNPLLKQRYSECSRRFDFVAKGLEEAK

Query:  AALVKGGYIPLSHATGATVVEADRCVKTFKKPPREPSKLPEKAKKIGDICDIAVSVSNILAEDY
        AAL KG YIPLSHATGA VV+AD CV  FKK P EPSKLPEKAK IGDICDIAVSVSNIL EDY
Subjt:  AALVKGGYIPLSHATGATVVEADRCVKTFKKPPREPSKLPEKAKKIGDICDIAVSVSNILAEDY

A0A5D3BT93 Pectinesterase inhibitor-like6.0e-6682.32Show/hide
Query:  FIVVLLHADTGSPNVITTTVCPRTRNSSLCRTVLKPAGKSD-ALLKVANYTLTLAHTTAVEGLRHAQRLAAAATNPLLKQRYSECSRRFDFVAKGLEEAK
        F VVLLHADTGSPNVIT+T+CP+TRNS+LC+TVLKP GKSD ALLKVANY+LTLAHTT VEGL+HAQRLA  AT+PLLKQRYSECSRRFD + KGLEEA 
Subjt:  FIVVLLHADTGSPNVITTTVCPRTRNSSLCRTVLKPAGKSD-ALLKVANYTLTLAHTTAVEGLRHAQRLAAAATNPLLKQRYSECSRRFDFVAKGLEEAK

Query:  AALVKGGYIPLSHATGATVVEADRCVKTFKKPPREPSKLPEKAKKIGDICDIAVSVSNILAEDY
        AAL KG YIPLSHATGA VV+AD CV  FKK P EPSKLPEKAK IGDICDIAVSVSNIL EDY
Subjt:  AALVKGGYIPLSHATGATVVEADRCVKTFKKPPREPSKLPEKAKKIGDICDIAVSVSNILAEDY

A0A6J1CCA7 protein TAPETUM DETERMINANT 1-like1.7e-3683.52Show/hide
Query:  CSNRDISISQSKDSTSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSFIVVL
        CSNRDISISQSKDST+GIP++IVQI NTCLS +CAPS+I LHCGWFASAKIVNP IFKR+FYDDCLVNGGKPL IS+TIRFTYSNSF+  L
Subjt:  CSNRDISISQSKDSTSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSFIVVL

D7SYL1 Uncharacterized protein8.5e-3681.32Show/hide
Query:  CSNRDISISQSKDSTSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSFIVVL
        C+NRDISISQS+DS+SGIP++IVQI NTC+S  CAPSDIHLHCGWFASA+IVNP IFKR+FYDDCLVNGGKPLK SQ IRFTYSNSF+  L
Subjt:  CSNRDISISQSKDSTSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSFIVVL

SwissProt top hitse value%identityAlignment
P83326 Pectinesterase inhibitor4.0e-1432.43Show/hide
Query:  NVITTTVCPRTRNSSLCRTVLK--PAGKSDALLKVANYTLTLAHTTAVEGLRHAQRLAAAATNPLLKQRYSECSRRFDFVAKGLEEAKAALVKGGYIPLS
        N + + +CP+TRN SLC   L+  P   S  L  +  +++ +A  +A +  +    L   AT+P LK RY  CS  +      L +AK  L  G Y  L+
Subjt:  NVITTTVCPRTRNSSLCRTVLK--PAGKSDALLKVANYTLTLAHTTAVEGLRHAQRLAAAATNPLLKQRYSECSRRFDFVAKGLEEAKAALVKGGYIPLS

Query:  HATGATVVEADRCVKTFKKPPREPSKLPEKAKKIGDICDIAVSVSNIL
            A    A  C  +F+ PP  P++L +   K+ D+CDI + +SN+L
Subjt:  HATGATVVEADRCVKTFKKPPREPSKLPEKAKKIGDICDIAVSVSNIL

Q1G3T1 TPD1 protein homolog 11.4e-1948.31Show/hide
Query:  CSNRDISISQSKDS--TSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSF
        CS  DI + Q   +   SG+P + V+I N+C+S DC  ++IH+ CGWF+S ++VNP +F+R+ YDDCLVN G+PL   Q++ F Y+NSF
Subjt:  CSNRDISISQSKDS--TSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSF

Q2QR54 TPD1 protein homolog 1A4.2e-1640.62Show/hide
Query:  GCSNR-DISISQSKDS--TSGIPEFIVQITNTCL-----SLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSF
        GC+   DI+I Q + +   SG+P + V + N C        +CA + IH+ CGWF+S  +V+P +F+R+ +DDCL+N G+PL   +T+ F Y+NSF
Subjt:  GCSNR-DISISQSKDS--TSGIPEFIVQITNTCL-----SLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSF

Q6TLJ2 Protein TAPETUM DETERMINANT 18.8e-2251.69Show/hide
Query:  CSNRDISISQ--SKDSTSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSF
        C + DI ++Q  ++   +GIP ++V+ITN C+S  C  S IH++CGWF+SAK++NP +FKRI YDDCLVN GKPL    T+ F Y+N+F
Subjt:  CSNRDISISQ--SKDSTSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSF

Q8S6P9 TPD1 protein homolog 1B8.0e-1543.3Show/hide
Query:  CSNRDISISQ--SKDSTSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSFIVVLLHAD
        CS +++ + Q  ++   SGIP + V+I N C +  C   D+H+ CG FASA++V+PS F+RI ++DCLV GG  L  S+ + F YSNSF   L  A+
Subjt:  CSNRDISISQ--SKDSTSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSFIVVLLHAD

Arabidopsis top hitse value%identityAlignment
AT1G32583.1 FUNCTIONS IN: molecular_function unknown1.0e-2048.31Show/hide
Query:  CSNRDISISQSKDS--TSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSF
        CS  DI + Q   +   SG+P + V+I N+C+S DC  ++IH+ CGWF+S ++VNP +F+R+ YDDCLVN G+PL   Q++ F Y+NSF
Subjt:  CSNRDISISQSKDS--TSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSF

AT4G24972.1 tapetum determinant 16.3e-2351.69Show/hide
Query:  CSNRDISISQ--SKDSTSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSF
        C + DI ++Q  ++   +GIP ++V+ITN C+S  C  S IH++CGWF+SAK++NP +FKRI YDDCLVN GKPL    T+ F Y+N+F
Subjt:  CSNRDISISQ--SKDSTSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAAAGGATGCAGCAACAGAGACATAAGCATTTCACAAAGCAAAGATTCAACATCAGGAATTCCAGAGTTCATAGTTCAAATTACAAACACTTGTCTCTCACTTGA
TTGTGCTCCGTCGGATATCCATCTCCATTGCGGCTGGTTTGCCTCCGCCAAGATCGTAAACCCTTCAATTTTCAAGAGAATATTTTACGATGATTGTTTGGTCAATGGAG
GGAAGCCATTGAAGATCAGCCAAACCATTAGATTCACTTACTCTAATTCCTTCATTGTAGTTCTTTTACATGCAGATACGGGATCTCCAAATGTCATTACAACCACAGTT
TGCCCCAGAACTAGAAACTCTTCTTTATGTCGAACCGTCTTGAAACCCGCCGGAAAATCTGACGCCCTCCTCAAAGTGGCTAATTACACTCTTACCCTTGCCCATACCAC
CGCCGTCGAAGGTCTCCGCCACGCACAGCGGCTGGCGGCGGCGGCCACCAATCCATTGCTTAAACAACGCTATTCCGAATGCTCACGGCGGTTTGATTTTGTGGCGAAGG
GTTTAGAAGAAGCCAAAGCCGCGTTGGTTAAAGGTGGGTATATTCCACTTAGCCACGCCACCGGCGCCACCGTGGTTGAGGCTGATAGATGTGTAAAAACCTTTAAAAAG
CCGCCGCGGGAACCATCGAAGCTGCCGGAGAAGGCTAAGAAAATTGGGGATATTTGTGACATTGCTGTTTCTGTGTCCAATATTCTCGCTGAAGATTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTAAAGGATGCAGCAACAGAGACATAAGCATTTCACAAAGCAAAGATTCAACATCAGGAATTCCAGAGTTCATAGTTCAAATTACAAACACTTGTCTCTCACTTGA
TTGTGCTCCGTCGGATATCCATCTCCATTGCGGCTGGTTTGCCTCCGCCAAGATCGTAAACCCTTCAATTTTCAAGAGAATATTTTACGATGATTGTTTGGTCAATGGAG
GGAAGCCATTGAAGATCAGCCAAACCATTAGATTCACTTACTCTAATTCCTTCATTGTAGTTCTTTTACATGCAGATACGGGATCTCCAAATGTCATTACAACCACAGTT
TGCCCCAGAACTAGAAACTCTTCTTTATGTCGAACCGTCTTGAAACCCGCCGGAAAATCTGACGCCCTCCTCAAAGTGGCTAATTACACTCTTACCCTTGCCCATACCAC
CGCCGTCGAAGGTCTCCGCCACGCACAGCGGCTGGCGGCGGCGGCCACCAATCCATTGCTTAAACAACGCTATTCCGAATGCTCACGGCGGTTTGATTTTGTGGCGAAGG
GTTTAGAAGAAGCCAAAGCCGCGTTGGTTAAAGGTGGGTATATTCCACTTAGCCACGCCACCGGCGCCACCGTGGTTGAGGCTGATAGATGTGTAAAAACCTTTAAAAAG
CCGCCGCGGGAACCATCGAAGCTGCCGGAGAAGGCTAAGAAAATTGGGGATATTTGTGACATTGCTGTTTCTGTGTCCAATATTCTCGCTGAAGATTACTAA
Protein sequenceShow/hide protein sequence
MIKGCSNRDISISQSKDSTSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSFIVVLLHADTGSPNVITTTV
CPRTRNSSLCRTVLKPAGKSDALLKVANYTLTLAHTTAVEGLRHAQRLAAAATNPLLKQRYSECSRRFDFVAKGLEEAKAALVKGGYIPLSHATGATVVEADRCVKTFKK
PPREPSKLPEKAKKIGDICDIAVSVSNILAEDY