CuGenDBv2

Gene ID	Clc06G05170
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	glycine-rich protein
Genome location	ClcChr06:5340195..5341219
RNA-Seq Expression	Clc06G05170
Synteny	Clc06G05170
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008458406.1 PREDICTED: uncharacterized protein LOC103497828 [Cucumis melo]

1.4e-91

92.5

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Query:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSE
        MDSSLVAGTLSMVANN IGFAK LNRLDFVSNYCISATDSITDQIP SS   +L+LSAALFPVATIAPPPVKSVS RSASRTFLRRKRRTKRRLYSDDSE
Subjt:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSE

Query:  GRENDGFGGGDFDGPYG--GGGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC
        GRE+DGFGGGDFDGPYG  GGGGGGGRGWNFDRFGGNDWDESS SSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEA GNSERGKLSMR ISVC
Subjt:  GRENDGFGGGDFDGPYG--GGGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC

XP_011657286.1 uncharacterized protein LOC105435841 [Cucumis sativus]

1.2e-92

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Query:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSE
        MDSSLVAGTLSMVANN IGFAK LNRLDFVSNYCIS TDSITDQIPPSS   AL+LSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSE
Subjt:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSE

Query:  GRENDGFGGGDFDGPYG--GGGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC
        GRE+DGFGGGDFDGP G  GGG GGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKL+MR ISVC
Subjt:  GRENDGFGGGDFDGPYG--GGGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC

XP_022138602.1 uncharacterized protein LOC111009719 [Momordica charantia]

6.1e-92

91.41

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Query:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSE
        MDSSLVAGTLSM ANNG+GFAKFLNRLDFVSNYC+SA+DSIT+QIPPSSA GALQLSAALFPVATIAPPPVKS+S RSASRTFLRRKRRTKRRLYSDDSE
Subjt:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSE

Query:  GRENDGFGGGDFDGPYGGGGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC
        G E+DGFGG +FDG YGGGGGG GRGWNFDRFGGNDWDESSSSSS SNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAA+AIGNSERGKLSMR ISVC
Subjt:  GRENDGFGGGDFDGPYGGGGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC

XP_023548774.1 uncharacterized protein LOC111807330 [Cucurbita pepo subsp. pepo]

2.9e-86

88.5

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Query:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLY-SDDS
        MD+SLVAGTLSMVANNG+GFAKFLNRLD +SNY ISATDSITDQIPPSSA GALQLSAALFPVATIAPPPVKS+S RS+SRTFLRRKRRTKRRLY SDDS
Subjt:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLY-SDDS

Query:  EGRENDGFGGGDFDGPYGG-GGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC
        EG E++GF GGDFDGPYGG GGGGGGRGWNFDRFGG+DWDESSSSS+S NPAYYFVYEV+CWIALSNCVHFAFKKVVRFAAEAIGNSER KL  R ISVC
Subjt:  EGRENDGFGGGDFDGPYGG-GGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC

XP_038874866.1 uncharacterized protein LOC120067363 [Benincasa hispida]

4.2e-93

92.96

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Query:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSE
        MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDS+TDQI PSSA GALQLSAALFP+ATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYS DSE
Subjt:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSE

Query:  GRENDGFGGGDFDGPYGG-GGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC
        GRE+DGF GGDFDGPYGG G  GGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA EA+GNSERGK+SMR ISVC
Subjt:  GRENDGFGGGDFDGPYGG-GGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KG90 Uncharacterized protein

5.9e-93

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Query:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSE
        MDSSLVAGTLSMVANN IGFAK LNRLDFVSNYCIS TDSITDQIPPSS   AL+LSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSE
Subjt:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSE

Query:  GRENDGFGGGDFDGPYG--GGGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC
        GRE+DGFGGGDFDGP G  GGG GGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKL+MR ISVC
Subjt:  GRENDGFGGGDFDGPYG--GGGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC

A0A1S3C7S8 uncharacterized protein LOC103497828

6.6e-92

92.5

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Query:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSE
        MDSSLVAGTLSMVANN IGFAK LNRLDFVSNYCISATDSITDQIP SS   +L+LSAALFPVATIAPPPVKSVS RSASRTFLRRKRRTKRRLYSDDSE
Subjt:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSE

Query:  GRENDGFGGGDFDGPYG--GGGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC
        GRE+DGFGGGDFDGPYG  GGGGGGGRGWNFDRFGGNDWDESS SSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEA GNSERGKLSMR ISVC
Subjt:  GRENDGFGGGDFDGPYG--GGGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC

A0A6J1CBL0 uncharacterized protein LOC111009719

2.9e-92

91.41

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Query:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSE
        MDSSLVAGTLSM ANNG+GFAKFLNRLDFVSNYC+SA+DSIT+QIPPSSA GALQLSAALFPVATIAPPPVKS+S RSASRTFLRRKRRTKRRLYSDDSE
Subjt:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSE

Query:  GRENDGFGGGDFDGPYGGGGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC
        G E+DGFGG +FDG YGGGGGG GRGWNFDRFGGNDWDESSSSSS SNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAA+AIGNSERGKLSMR ISVC
Subjt:  GRENDGFGGGDFDGPYGGGGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC

A0A6J1H560 uncharacterized protein LOC111460236

5.9e-85

87.5

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Query:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYS-DDS
        MD+SLVAGTLSMVANNG+GFAKFLNRLD +SNY  SATDSITDQIPPSSA GALQLSAALFPVATIAPPPVKS+S RS+SR FLRRKRRTKRRLYS DDS
Subjt:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYS-DDS

Query:  EGRENDGFGGGDFDGPYGG-GGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC
        EG E++GF GGDFDGPYGG GGGGGGRGWNFDRF G+DWDESSSSS+S NPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSER KL +R ISVC
Subjt:  EGRENDGFGGGDFDGPYGG-GGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC

A0A6J1KZI4 uncharacterized protein LOC111499005

5.4e-86

88.5

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Query:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLY-SDDS
        MD+SLVAGTLS+VANNG+GFAKFLNRLD +SNY ISATDSITDQIPPSSA GALQLS ALFPVATIAPPPVKS+S RS+SRTFLRRKRRTKRRLY SDDS
Subjt:  MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLY-SDDS

Query:  EGRENDGFGGGDFDGPYGG-GGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC
        EG E++GF  GDFDGPYGG GGGGGGRGWNFDRFGGNDWDESSSSS+S NPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSER KL MR ISVC
Subjt:  EGRENDGFGGGDFDGPYGG-GGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G06780.1 glycine-rich protein

8.3e-31

46.26

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Query:  MDSSLVAGTLSM-VANNGIGFAK-FLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDD
        M+ SL+A T+++  A  GI F K  L RLD  ++  IS  DS+ D   P    G +Q SA +FPV  IAPPPV+S SY++  R  +R+KRRT+R  +  D
Subjt:  MDSSLVAGTLSM-VANNGIGFAK-FLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDD

Query:  SEGRENDG-------FGGGDFDGPYGGGGG---GGGRGWNF----DRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGN
         +   + G       FGG   DGP+G GGG   GGG+GWN+      FG ++WD  SS SS S+PA  FVYEV+CWIALSNCVHFAFK++VR     + +
Subjt:  SEGRENDG-------FGGGDFDGPYGGGGG---GGGRGWNF----DRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGN

Query:  SERGKLSMRFISVC
         ER KL++    VC
Subjt:  SERGKLSMRFISVC

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATTCCTCTCTGGTTGCTGGAACGCTTTCAATGGTTGCCAACAACGGCATCGGCTTCGCTAAATTCCTCAACCGCCTCGATTTCGTTTCCAATTACTGTATCTCAGC
CACCGATTCAATCACTGACCAGATCCCACCATCTTCCGCCCCTGGAGCTCTTCAATTATCTGCCGCACTTTTCCCCGTCGCAACCATTGCTCCACCGCCTGTCAAATCCG
TTTCGTACCGATCGGCCTCGCGGACGTTTCTCCGTAGAAAGCGACGCACGAAGCGTAGATTGTACAGCGATGATTCCGAAGGCCGCGAAAACGATGGATTCGGTGGCGGC
GATTTTGACGGACCGTATGGCGGCGGCGGCGGCGGCGGCGGTAGAGGTTGGAATTTCGATAGATTTGGGGGAAATGATTGGGATGAATCATCCTCTTCTTCTTCCTCTTC
CAATCCTGCGTATTATTTCGTTTACGAGGTGGTTTGTTGGATCGCGCTGTCAAATTGTGTTCATTTTGCGTTCAAGAAGGTTGTTAGATTTGCAGCTGAAGCAATTGGGA
ATTCCGAAAGGGGAAAATTATCCATGAGATTTATCTCCGTTTGTTGA

mRNA sequence

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CCTCGCGTTACGAACACGCGGCGTTTTCGGATTCCAGTGTCGTGGAGTAACTCGTCCGCCATCTCGTTTTCCTCGTTGATTTTTCTTCAACTTCCCCAAATTTCTTAAAG
CCCTAGATTTCTCTTCTACGAAATCCCAATTCTTTTTCCAATTCGACATCCTTCCATTGCAATGGATTCCTCTCTGGTTGCTGGAACGCTTTCAATGGTTGCCAACAACG
GCATCGGCTTCGCTAAATTCCTCAACCGCCTCGATTTCGTTTCCAATTACTGTATCTCAGCCACCGATTCAATCACTGACCAGATCCCACCATCTTCCGCCCCTGGAGCT
CTTCAATTATCTGCCGCACTTTTCCCCGTCGCAACCATTGCTCCACCGCCTGTCAAATCCGTTTCGTACCGATCGGCCTCGCGGACGTTTCTCCGTAGAAAGCGACGCAC
GAAGCGTAGATTGTACAGCGATGATTCCGAAGGCCGCGAAAACGATGGATTCGGTGGCGGCGATTTTGACGGACCGTATGGCGGCGGCGGCGGCGGCGGCGGTAGAGGTT
GGAATTTCGATAGATTTGGGGGAAATGATTGGGATGAATCATCCTCTTCTTCTTCCTCTTCCAATCCTGCGTATTATTTCGTTTACGAGGTGGTTTGTTGGATCGCGCTG
TCAAATTGTGTTCATTTTGCGTTCAAGAAGGTTGTTAGATTTGCAGCTGAAGCAATTGGGAATTCCGAAAGGGGAAAATTATCCATGAGATTTATCTCCGTTTGTTGATT
GGTACAAATTCTCTTCTCAACAAACATCCTTTAGAATGGAAATCTGGTTATAAAAATCTCTTGTATTCAATTGAAAATTGGTATGTATATATTTTGTAAATAATTCACAT
TGTTTTATCTTAGTAAATTACATATTGAAATCTGTGCAATCTGATGATCTCATTCCTTGCTTCCCGTGGCTGGTGTTTATCATTCTTATAATGGATAAATATGTGTCTCT
TTCTTTCTCAACCTGTGAGAGAAATCTGTGGGCGG

Protein sequence

Show/hide protein sequence

MDSSLVAGTLSMVANNGIGFAKFLNRLDFVSNYCISATDSITDQIPPSSAPGALQLSAALFPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSEGRENDGFGGG
DFDGPYGGGGGGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERGKLSMRFISVC

Clc06G05170 (gene) of Watermelon (cordophanus) v2 genome