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Clc06G05200 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G05200
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr06:5364165..5372603
RNA-Seq ExpressionClc06G05200
SyntenyClc06G05200
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575081.1 hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sororia]1.4e-1871.43Show/hide
Query:  APRADLAKIGREGFELIDEYFGRAPAARRVA--AKARPILPQPPRKAEQPPRKRTEKPAAAVKTSDQVAKTGGGIVITTWRAER
        A R DLAKIGREGF+LIDEYFGRAPA RR A  A ARP LPQ P KAEQPPRK+ EK   AV   +QVAK  GGIVITTWRA +
Subjt:  APRADLAKIGREGFELIDEYFGRAPAARRVA--AKARPILPQPPRKAEQPPRKRTEKPAAAVKTSDQVAKTGGGIVITTWRAER

KAG6575082.1 hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sororia]5.2e-1870.73Show/hide
Query:  APRADLAKIGREGFELIDEYFGRAPAARRVAAKARPILPQPPRKAEQPPRKRTEKPAAAVKTSDQVAKTGGGIVITTWRAER
        APRADLAKIGREGFELIDEYFGR PA RR A  ARP LPQ P KAEQPPRK  EK    V   +QVA+  GG+VITTWRA +
Subjt:  APRADLAKIGREGFELIDEYFGRAPAARRVAAKARPILPQPPRKAEQPPRKRTEKPAAAVKTSDQVAKTGGGIVITTWRAER

KGN47421.1 hypothetical protein Csa_021737 [Cucumis sativus]1.0e-1871.88Show/hide
Query:  RAEREIRNTRADLATIGREGFKLIDEFFGRAPAA---RRVAATE-RPAQPQPSRK-AEQPPWKKKEKPAAAVTSDQLAKTRGGIVITTWR--AKRK
        R EREI +T A+LA IG EGFKLID+FFGRA      R VAATE RPAQ QP RK AEQPP K KEK  A VTSD LAKTRGGIVITTWR  AKRK
Subjt:  RAEREIRNTRADLATIGREGFKLIDEFFGRAPAA---RRVAATE-RPAQPQPSRK-AEQPPWKKKEKPAAAVTSDQLAKTRGGIVITTWR--AKRK

KGN47422.1 hypothetical protein Csa_021740 [Cucumis sativus]6.1e-2781.52Show/hide
Query:  MGFLREREIRAPRADLAKIGREGFELIDEYFGRAPA--ARRVAAK-ARPILPQPPRKAEQPPRKRTEKPAAAVKTSDQVAKTGGGIVITTWR
        MGFLREREIR  R DLAKIGREGF++IDEYFGRA +  ARRVAAK ARP LPQPPRKAEQPPR R EKP AAV TSDQVAK GGG VITTWR
Subjt:  MGFLREREIRAPRADLAKIGREGFELIDEYFGRAPA--ARRVAAK-ARPILPQPPRKAEQPPRKRTEKPAAAVKTSDQVAKTGGGIVITTWR

XP_023548315.1 multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. pepo]1.1e-1280.7Show/hide
Query:  APRADLAKIGREGFELIDEYFGRAPAARRVAAKA--RPILPQPPRKAEQPPRKRTEK
        APRADLAKIGREGFELIDEYFGR PA RR AA A  RP LPQ P KAEQPPRK  EK
Subjt:  APRADLAKIGREGFELIDEYFGRAPAARRVAAKA--RPILPQPPRKAEQPPRKRTEK

TrEMBL top hitse value%identityAlignment
A0A0A0KG95 Uncharacterized protein3.0e-2781.52Show/hide
Query:  MGFLREREIRAPRADLAKIGREGFELIDEYFGRAPA--ARRVAAK-ARPILPQPPRKAEQPPRKRTEKPAAAVKTSDQVAKTGGGIVITTWR
        MGFLREREIR  R DLAKIGREGF++IDEYFGRA +  ARRVAAK ARP LPQPPRKAEQPPR R EKP AAV TSDQVAK GGG VITTWR
Subjt:  MGFLREREIRAPRADLAKIGREGFELIDEYFGRAPA--ARRVAAK-ARPILPQPPRKAEQPPRKRTEKPAAAVKTSDQVAKTGGGIVITTWR

A0A0A0KI19 Uncharacterized protein5.1e-1971.88Show/hide
Query:  RAEREIRNTRADLATIGREGFKLIDEFFGRAPAA---RRVAATE-RPAQPQPSRK-AEQPPWKKKEKPAAAVTSDQLAKTRGGIVITTWR--AKRK
        R EREI +T A+LA IG EGFKLID+FFGRA      R VAATE RPAQ QP RK AEQPP K KEK  A VTSD LAKTRGGIVITTWR  AKRK
Subjt:  RAEREIRNTRADLATIGREGFKLIDEFFGRAPAA---RRVAATE-RPAQPQPSRK-AEQPPWKKKEKPAAAVTSDQLAKTRGGIVITTWR--AKRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTTCTTAGAGAAAGAGAAATTAGGGCTCCTCGTGCTGATCTGGCGAAAATTGGGAGAGAAGGATTTGAACTAATTGACGAATACTTTGGTCGAGCGCCGGCGGC
GAGAAGGGTGGCGGCCAAGGCAAGGCCGATTCTGCCCCAGCCACCACGTAAGGCGGAGCAACCTCCGAGGAAGAGGACGGAAAAACCGGCGGCGGCCGTGAAGACCTCCG
ATCAGGTGGCGAAAACCGGTGGTGGAATCGTGATAACAACTTGGCGTGCAGAAAGAGAAATTAGGAATACTCGTGCTGACCTGGCGACGATTGGGAGAGAAGGATTTAAA
CTAATTGACGAATTCTTCGGTCGAGCGCCGGCAGCCAGAAGGGTGGCGGCAACGGAGAGGCCGGCTCAGCCGCAGCCGTCGCGTAAGGCAGAGCAACCTCCATGGAAGAA
GAAAGAAAAACCGGCGGCGGCCGTGACTTCCGATCAGTTGGCCAAAACCCGCGGCGGCATCGTGATAACAACTTGGCGTGCAAAACGAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTTCTTAGAGAAAGAGAAATTAGGGCTCCTCGTGCTGATCTGGCGAAAATTGGGAGAGAAGGATTTGAACTAATTGACGAATACTTTGGTCGAGCGCCGGCGGC
GAGAAGGGTGGCGGCCAAGGCAAGGCCGATTCTGCCCCAGCCACCACGTAAGGCGGAGCAACCTCCGAGGAAGAGGACGGAAAAACCGGCGGCGGCCGTGAAGACCTCCG
ATCAGGTGGCGAAAACCGGTGGTGGAATCGTGATAACAACTTGGCGTGCAGAAAGAGAAATTAGGAATACTCGTGCTGACCTGGCGACGATTGGGAGAGAAGGATTTAAA
CTAATTGACGAATTCTTCGGTCGAGCGCCGGCAGCCAGAAGGGTGGCGGCAACGGAGAGGCCGGCTCAGCCGCAGCCGTCGCGTAAGGCAGAGCAACCTCCATGGAAGAA
GAAAGAAAAACCGGCGGCGGCCGTGACTTCCGATCAGTTGGCCAAAACCCGCGGCGGCATCGTGATAACAACTTGGCGTGCAAAACGAAAATAG
Protein sequenceShow/hide protein sequence
MGFLREREIRAPRADLAKIGREGFELIDEYFGRAPAARRVAAKARPILPQPPRKAEQPPRKRTEKPAAAVKTSDQVAKTGGGIVITTWRAEREIRNTRADLATIGREGFK
LIDEFFGRAPAARRVAATERPAQPQPSRKAEQPPWKKKEKPAAAVTSDQLAKTRGGIVITTWRAKRK