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Clc06G05665 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G05665
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionZinc finger, B-box
Genome locationClcChr06:5802033..5805564
RNA-Seq ExpressionClc06G05665
SyntenyClc06G05665
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMP06618.1 Zinc finger, B-box [Corchorus olitorius]4.0e-0444.78Show/hide
Query:  RIAAESTERARNDVAPSKERIRETAPWPQNLPNTLQILFQLRCEFPCRPMTPTAAAAPKPENSSATV
        R+A+ ++++   D  P+K++I     W Q  PN LQ LFQ  CE P R  TPTA AAP  ENS A +
Subjt:  RIAAESTERARNDVAPSKERIRETAPWPQNLPNTLQILFQLRCEFPCRPMTPTAAAAPKPENSSATV

PON80264.1 hypothetical protein PanWU01x14_007140, partial [Parasponia andersonii]1.4e-0943.52Show/hide
Query:  RIAAESTERARNDVAPSKERIRETAPWPQNLPNTLQILFQLRCEFPCRPMTPTAAAAPKPENSSATVRMSITIIADLTKPLLLPLFKAESSSEKAAYEHA
        R+ A +T + R  +A S+E  +  A W QNLPNT    F   CEFP  P+ P A AAP  E SS  +  S      L   L  P F  E   E AAYEHA
Subjt:  RIAAESTERARNDVAPSKERIRETAPWPQNLPNTLQILFQLRCEFPCRPMTPTAAAAPKPENSSATVRMSITIIADLTKPLLLPLFKAESSSEKAAYEHA

Query:  IAFATIKY
        +A AT KY
Subjt:  IAFATIKY

POO02377.1 hypothetical protein TorRG33x02_021610 [Trema orientale]6.9e-1247.47Show/hide
Query:  RNDVAPSKERIRETAPWPQNLPNTLQILFQLRCEFPCRPMTPTAAAAPKPENSSATVRMSITIIADLTKPLLLPLFKAESSSEKAAYEHAIAFATIKYL
        R  +APS+E  +  A W QNLPNTL   F   CEFP  P+ P A AAP  E SS  +  S      L   L  P F +E   E AAYEHA+A AT KYL
Subjt:  RNDVAPSKERIRETAPWPQNLPNTLQILFQLRCEFPCRPMTPTAAAAPKPENSSATVRMSITIIADLTKPLLLPLFKAESSSEKAAYEHAIAFATIKYL

TrEMBL top hitse value%identityAlignment
A0A0A0KFK4 Uncharacterized protein7.4e-0461.11Show/hide
Query:  KKMMAVFVMCILVVAALEISTVAAGEEAKCDGNCGGVGGSPNTTPRKKTFFSRI
        KKMMAVF++CILV+AALEIS VAAGEEA             N  PRKK+ FSRI
Subjt:  KKMMAVFVMCILVVAALEISTVAAGEEAKCDGNCGGVGGSPNTTPRKKTFFSRI

A0A1R3KHZ6 Zinc finger, B-box1.9e-0444.78Show/hide
Query:  RIAAESTERARNDVAPSKERIRETAPWPQNLPNTLQILFQLRCEFPCRPMTPTAAAAPKPENSSATV
        R+A+ ++++   D  P+K++I     W Q  PN LQ LFQ  CE P R  TPTA AAP  ENS A +
Subjt:  RIAAESTERARNDVAPSKERIRETAPWPQNLPNTLQILFQLRCEFPCRPMTPTAAAAPKPENSSATV

A0A2P5E3Z6 Uncharacterized protein (Fragment)6.9e-1043.52Show/hide
Query:  RIAAESTERARNDVAPSKERIRETAPWPQNLPNTLQILFQLRCEFPCRPMTPTAAAAPKPENSSATVRMSITIIADLTKPLLLPLFKAESSSEKAAYEHA
        R+ A +T + R  +A S+E  +  A W QNLPNT    F   CEFP  P+ P A AAP  E SS  +  S      L   L  P F  E   E AAYEHA
Subjt:  RIAAESTERARNDVAPSKERIRETAPWPQNLPNTLQILFQLRCEFPCRPMTPTAAAAPKPENSSATVRMSITIIADLTKPLLLPLFKAESSSEKAAYEHA

Query:  IAFATIKY
        +A AT KY
Subjt:  IAFATIKY

A0A2P5FX85 Uncharacterized protein3.3e-1247.47Show/hide
Query:  RNDVAPSKERIRETAPWPQNLPNTLQILFQLRCEFPCRPMTPTAAAAPKPENSSATVRMSITIIADLTKPLLLPLFKAESSSEKAAYEHAIAFATIKYL
        R  +APS+E  +  A W QNLPNTL   F   CEFP  P+ P A AAP  E SS  +  S      L   L  P F +E   E AAYEHA+A AT KYL
Subjt:  RNDVAPSKERIRETAPWPQNLPNTLQILFQLRCEFPCRPMTPTAAAAPKPENSSATVRMSITIIADLTKPLLLPLFKAESSSEKAAYEHAIAFATIKYL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCGAAGAAGATGATGGCAGTGTTTGTAATGTGCATTCTGGTGGTGGCGGCACTTGAGATATCCACCGTGGCGGCGGGGGAGGAGGCTAAATGTGATGGAAATTG
CGGCGGAGTTGGTGGTTCTCCAAATACTACTCCGAGGAAAAAAACATTTTTCAGCCGCATTGCCGCAGAAAGCACAGAGAGAGCGAGAAACGACGTCGCTCCAAGCAAGG
AGAGGATAAGAGAAACAGCTCCTTGGCCACAGAATCTTCCAAACACATTGCAAATTTTGTTCCAATTAAGATGTGAATTCCCTTGCCGGCCGATGACACCGACCGCGGCG
GCGGCTCCGAAGCCGGAAAACAGCAGCGCCACCGTCAGAATGTCCATCACGATTATCGCCGATCTTACGAAGCCTCTGCTTTTGCCTTTGTTTAAGGCTGAAAGTAGTAG
CGAGAAGGCTGCATATGAACATGCTATTGCATTTGCCACCATAAAATACCTATACAACAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCGAAGAAGATGATGGCAGTGTTTGTAATGTGCATTCTGGTGGTGGCGGCACTTGAGATATCCACCGTGGCGGCGGGGGAGGAGGCTAAATGTGATGGAAATTG
CGGCGGAGTTGGTGGTTCTCCAAATACTACTCCGAGGAAAAAAACATTTTTCAGCCGCATTGCCGCAGAAAGCACAGAGAGAGCGAGAAACGACGTCGCTCCAAGCAAGG
AGAGGATAAGAGAAACAGCTCCTTGGCCACAGAATCTTCCAAACACATTGCAAATTTTGTTCCAATTAAGATGTGAATTCCCTTGCCGGCCGATGACACCGACCGCGGCG
GCGGCTCCGAAGCCGGAAAACAGCAGCGCCACCGTCAGAATGTCCATCACGATTATCGCCGATCTTACGAAGCCTCTGCTTTTGCCTTTGTTTAAGGCTGAAAGTAGTAG
CGAGAAGGCTGCATATGAACATGCTATTGCATTTGCCACCATAAAATACCTATACAACAAATGA
Protein sequenceShow/hide protein sequence
MAAKKMMAVFVMCILVVAALEISTVAAGEEAKCDGNCGGVGGSPNTTPRKKTFFSRIAAESTERARNDVAPSKERIRETAPWPQNLPNTLQILFQLRCEFPCRPMTPTAA
AAPKPENSSATVRMSITIIADLTKPLLLPLFKAESSSEKAAYEHAIAFATIKYLYNK