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Clc06G06360 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G06360
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationClcChr06:6602651..6604628
RNA-Seq ExpressionClc06G06360
SyntenyClc06G06360
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.6e-0632.31Show/hide
Query:  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDALEVI
        WKLN + AW AD  TG + W++RD  G  I   C+ I     ++ LEV AI EGLR +      PI                         ++SD+LE I
Subjt:  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDALEVI

Query:  KLLNREAFSYAAIDVLIEDILSLLSFFVIV
         LL+R+      I  L+E+I  ++    IV
Subjt:  KLLNREAFSYAAIDVLIEDILSLLSFFVIV

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]2.1e-0639.76Show/hide
Query:  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGV
        WKLN D AW AD  T  + W++RD  G  I  GC+ I     ++ LEV AI EGLR +      PI       +A+  L R V
Subjt:  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGV

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]2.1e-0639.76Show/hide
Query:  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGV
        WKLN D AW AD  T  + W++RD  G  I  GC+ I     ++ LEV AI EGLR +      PI       +A+  L R V
Subjt:  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGV

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.8e-0529.92Show/hide
Query:  PERCWKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDA
        P   W LN D +WS     G + W++R  DG  +L G +F+     + LLE  AILEGLR L                               L +++D+
Subjt:  PERCWKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDA

Query:  LEVIKLLNREAFSYAAIDVLIEDILSL
         EV  LLNR+         ++E+IL+L
Subjt:  LEVIKLLNREAFSYAAIDVLIEDILSL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.3e-0733.08Show/hide
Query:  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDALEVI
        WKLN D AW AD  TG + W++RD  G  I   C+ I     ++ LEV AI EGLR +      PI                   +   + ++SD+LE I
Subjt:  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDALEVI

Query:  KLLNREAFSYAAIDVLIEDILSLLSFFVIV
         LL+R+      I  L+E+I  ++    IV
Subjt:  KLLNREAFSYAAIDVLIEDILSLLSFFVIV

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134127.9e-0732.31Show/hide
Query:  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDALEVI
        WKLN + AW AD  TG + W++RD  G  I   C+ I     ++ LEV AI EGLR +      PI                         ++SD+LE I
Subjt:  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDALEVI

Query:  KLLNREAFSYAAIDVLIEDILSLLSFFVIV
         LL+R+      I  L+E+I  ++    IV
Subjt:  KLLNREAFSYAAIDVLIEDILSLLSFFVIV

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X11.0e-0639.76Show/hide
Query:  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGV
        WKLN D AW AD  T  + W++RD  G  I  GC+ I     ++ LEV AI EGLR +      PI       +A+  L R V
Subjt:  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGV

A0A6J1DNV9 uncharacterized protein LOC1110224038.7e-0629.92Show/hide
Query:  PERCWKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDA
        P   W LN D +WS     G + W++R  DG  +L G +F+     + LLE  AILEGLR L                               L +++D+
Subjt:  PERCWKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDA

Query:  LEVIKLLNREAFSYAAIDVLIEDILSL
         EV  LLNR+         ++E+IL+L
Subjt:  LEVIKLLNREAFSYAAIDVLIEDILSL

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X21.0e-0639.76Show/hide
Query:  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGV
        WKLN D AW AD  T  + W++RD  G  I  GC+ I     ++ LEV AI EGLR +      PI       +A+  L R V
Subjt:  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGV

A0A6J1DSV1 uncharacterized protein LOC1110236081.6e-0733.08Show/hide
Query:  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDALEVI
        WKLN D AW AD  TG + W++RD  G  I   C+ I     ++ LEV AI EGLR +      PI                   +   + ++SD+LE I
Subjt:  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDALEVI

Query:  KLLNREAFSYAAIDVLIEDILSLLSFFVIV
         LL+R+      I  L+E+I  ++    IV
Subjt:  KLLNREAFSYAAIDVLIEDILSLLSFFVIV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCACGTGCGACTGAAGGAGGGAAAACGTAGGGTAGTTGGATATTATCTACTGAAGACTTTTTTAATAAAGCCACTTTCTCGTTTGTATACTTCACCTGAAAGATG
TTGGAAGTTGAATGTGGATGTTGCTTGGTCTGCTGATAGAGGGACGGGTAGTCTTAGGTGGCTTGTTCGGGACCATGACGGGTGTGCTATTTTAGGAGGCTGTAAATTCA
TCTCTAAAGGTATTTATATGAGCCTTCTAGAAGTCGAAGCCATTCTAGAGGGGCTAAGGGTGCTTGTTGGGGCGTGGTCAGGTCCTATCACCTGTTGTGAGGTGAAGTTT
GATGCTCTGGAGTGCTTGGGGCGTGGGGTCGGGTCCTATCATCTGTTGTTGGAGGTGAAGTCTGATGCTCTGGAGGTCATCAAGCTGCTAAATAGAGAGGCGTTTTCTTA
TGCTGCAATTGATGTCCTTATAGAGGATATACTGTCCTTATTGAGTTTTTTTGTCATTGTCCTTTACAATTTGCCCATTGGCTTTTTATATTTAAATTTTGCTCTAACCC
ACTAA
mRNA sequenceShow/hide mRNA sequence
ATGACCCACGTGCGACTGAAGGAGGGAAAACGTAGGGTAGTTGGATATTATCTACTGAAGACTTTTTTAATAAAGCCACTTTCTCGTTTGTATACTTCACCTGAAAGATG
TTGGAAGTTGAATGTGGATGTTGCTTGGTCTGCTGATAGAGGGACGGGTAGTCTTAGGTGGCTTGTTCGGGACCATGACGGGTGTGCTATTTTAGGAGGCTGTAAATTCA
TCTCTAAAGGTATTTATATGAGCCTTCTAGAAGTCGAAGCCATTCTAGAGGGGCTAAGGGTGCTTGTTGGGGCGTGGTCAGGTCCTATCACCTGTTGTGAGGTGAAGTTT
GATGCTCTGGAGTGCTTGGGGCGTGGGGTCGGGTCCTATCATCTGTTGTTGGAGGTGAAGTCTGATGCTCTGGAGGTCATCAAGCTGCTAAATAGAGAGGCGTTTTCTTA
TGCTGCAATTGATGTCCTTATAGAGGATATACTGTCCTTATTGAGTTTTTTTGTCATTGTCCTTTACAATTTGCCCATTGGCTTTTTATATTTAAATTTTGCTCTAACCC
ACTAA
Protein sequenceShow/hide protein sequence
MTHVRLKEGKRRVVGYYLLKTFLIKPLSRLYTSPERCWKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKF
DALECLGRGVGSYHLLLEVKSDALEVIKLLNREAFSYAAIDVLIEDILSLLSFFVIVLYNLPIGFLYLNFALTH