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Clc06G06985 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G06985
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationClcChr06:7314019..7314381
RNA-Seq ExpressionClc06G06985
SyntenyClc06G06985
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.7e-2346.36Show/hide
Query:  MWDSLNHKATDVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVDL
        MW+  N     VF+  FS+S+Q+   +G  WWLS IYG A R+ R  FWEEL++++ +C   W L GDFNV  W  ETT+ +P+ ++MRRFNS+I+N +L
Subjt:  MWDSLNHKATDVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVDL

Query:  IEPIQINGTY
        I+P   N  Y
Subjt:  IEPIQINGTY

KAA0044449.1 hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa]2.9e-2045Show/hide
Query:  DVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY
        DV +  FS+S+Q+   +G  WWLS IYG A R+ R  FWEEL+N++ +C   W L GDFNV  W  ET++ +P+ ++M+RFN++I+N +LI+P   N  +
Subjt:  DVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY

TYJ99326.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.6e-2344.55Show/hide
Query:  MWDSLNHKATDVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVDL
        MW+  N     VF+ NFS+S+Q+   +G  WWLS IYG A R+ R  FWEEL+N++ +C   W L GDFNV  W  ET++ +P+ ++M+RFN++I+N +L
Subjt:  MWDSLNHKATDVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVDL

Query:  IEPIQINGTY
        I+P   N  +
Subjt:  IEPIQINGTY

XP_011650214.1 uncharacterized protein LOC105434766 [Cucumis sativus]1.2e-2140.71Show/hide
Query:  ILIMWDSLNHKATDVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITN
        IL+MWD L H+  +     F++S   +  DG  WW++ +Y L +R +R +FW+EL N+   CG  W LAGDFN   W  ET+S +P + +M +FN  I N
Subjt:  ILIMWDSLNHKATDVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITN

Query:  VDLIEPIQINGTY
        + L++P   NG+Y
Subjt:  VDLIEPIQINGTY

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]2.6e-2141.59Show/hide
Query:  ILIMWDSLNHKATDVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITN
        I+++WD L+  A +V   +FS+SV     D   WWL+G+Y    ++KR  FW+EL ++  LCG  W L  DFN+Y W+ ET+S +P Q  M +FN +I  
Subjt:  ILIMWDSLNHKATDVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITN

Query:  VDLIEPIQINGTY
          LI+P   NG Y
Subjt:  VDLIEPIQINGTY

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein2.3e-2346.36Show/hide
Query:  MWDSLNHKATDVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVDL
        MW+  N     VF+  FS+S+Q+   +G  WWLS IYG A R+ R  FWEEL++++ +C   W L GDFNV  W  ETT+ +P+ ++MRRFNS+I+N +L
Subjt:  MWDSLNHKATDVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVDL

Query:  IEPIQINGTY
        I+P   N  Y
Subjt:  IEPIQINGTY

A0A5A7TTA1 DUF4283 domain-containing protein1.4e-2045Show/hide
Query:  DVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY
        DV +  FS+S+Q+   +G  WWLS IYG A R+ R  FWEEL+N++ +C   W L GDFNV  W  ET++ +P+ ++M+RFN++I+N +LI+P   N  +
Subjt:  DVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY

A0A5D3BJP3 LINE-1 retrotransposable element ORF2 protein1.8e-2344.55Show/hide
Query:  MWDSLNHKATDVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVDL
        MW+  N     VF+ NFS+S+Q+   +G  WWLS IYG A R+ R  FWEEL+N++ +C   W L GDFNV  W  ET++ +P+ ++M+RFN++I+N +L
Subjt:  MWDSLNHKATDVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVDL

Query:  IEPIQINGTY
        I+P   N  +
Subjt:  IEPIQINGTY

A0A5D3E0F6 LINE-1 retrotransposable element ORF2 protein2.6e-1945.74Show/hide
Query:  FSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY
        FS+S+Q+   +G  WWLS IYG A R+ R  FWEEL+N++ +C   W L GDFNV  W  ET++ +P+ ++M+RFN++I+N +LI+P   N  +
Subjt:  FSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY

A0A6J1CVN2 uncharacterized protein LOC1110146571.3e-2141.59Show/hide
Query:  ILIMWDSLNHKATDVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITN
        I+++WD L+  A +V   +FS+SV     D   WWL+G+Y    ++KR  FW+EL ++  LCG  W L  DFN+Y W+ ET+S +P Q  M +FN +I  
Subjt:  ILIMWDSLNHKATDVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITN

Query:  VDLIEPIQINGTY
          LI+P   NG Y
Subjt:  VDLIEPIQINGTY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAATCACTCCAAGCATCTTAATCATGTGGGATTCTCTCAATCACAAAGCAACCGATGTATTCGAGGAGAATTTCTCCTTATCTGTACAAATTATTAGAACTGATGG
TTTAATCTGGTGGTTATCTGGTATTTACGGTCTGGCAAGTAGAAGAAAGCGTATGACTTTTTGGGAAGAGCTCGACAATGTGCGATATCTATGTGGTGAGTGCTGGTTTT
TAGCTGGCGATTTCAATGTCTATTGTTGGACTTTTGAAACTACTTCTCCACATCCATCACAGATTAACATGAGAAGATTCAATTCATATATCACCAATGTTGATCTTATT
GAGCCTATACAAATCAATGGAACCTACATATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAATCACTCCAAGCATCTTAATCATGTGGGATTCTCTCAATCACAAAGCAACCGATGTATTCGAGGAGAATTTCTCCTTATCTGTACAAATTATTAGAACTGATGG
TTTAATCTGGTGGTTATCTGGTATTTACGGTCTGGCAAGTAGAAGAAAGCGTATGACTTTTTGGGAAGAGCTCGACAATGTGCGATATCTATGTGGTGAGTGCTGGTTTT
TAGCTGGCGATTTCAATGTCTATTGTTGGACTTTTGAAACTACTTCTCCACATCCATCACAGATTAACATGAGAAGATTCAATTCATATATCACCAATGTTGATCTTATT
GAGCCTATACAAATCAATGGAACCTACATATAG
Protein sequenceShow/hide protein sequence
MQITPSILIMWDSLNHKATDVFEENFSLSVQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLI
EPIQINGTYI