; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G07190 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G07190
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionC2H2-type domain-containing protein
Genome locationClcChr06:7589684..7590588
RNA-Seq ExpressionClc06G07190
SyntenyClc06G07190
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593852.1 Transcriptional regulator TAC1, partial [Cucurbita argyrosperma subsp. sororia]3.3e-4362.65Show/hide
Query:  MDSEKLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSNQVIGSSTFNNIPFF
        MDSEKLGSS SESSS  EEQS+ + EDD SD+F  +KRSY CIFCKRGFTNAQALGGHMNIHRKDR NK  ++ASF   S  ++       STF N P F
Subjt:  MDSEKLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSNQVIGSSTFNNIPFF

Query:  GPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLWNGDGVDLELRLGNHP
         P L  S+++Y  S S P GYFQ+LGD NMN WG+DLSL+I P+KGR  +W+G+G+DLELRLG++P
Subjt:  GPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLWNGDGVDLELRLGNHP

KGN61620.1 hypothetical protein Csa_006775 [Cucumis sativus]1.1e-5170.52Show/hide
Query:  SSCSESSS--ELEEQSEAIKED------DYSDNFTN--IKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIA---SFSPSSSSLQS-NQVIGSST
        S+CS+SSS  +LE+     KED      +YSDNF +  IKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPK +   S S SSSSLQS NQ+IG ST
Subjt:  SSCSESSS--ELEEQSEAIKED------DYSDNFTN--IKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIA---SFSPSSSSLQS-NQVIGSST

Query:  FNNIPFFGPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLW-NGDGVDLELRLGNH
        FNNIP+FGP LG SQ+NYQAS S  HG       FNMNLWGSDLSLQIG T GRR+LW NGDGVDLELRLG+H
Subjt:  FNNIPFFGPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLW-NGDGVDLELRLGNH

XP_022930490.1 probable transcriptional regulator RABBIT EARS [Cucurbita moschata]2.0e-4363.25Show/hide
Query:  MDSEKLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSNQVIGSSTFNNIPFF
        MDSEKLGSS SESSS   EQS+ + EDD SD+F  +KRSY CIFCKRGFTNAQALGGHMNIHRKDR NK  +IASF   S  ++       STF N P F
Subjt:  MDSEKLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSNQVIGSSTFNNIPFF

Query:  GPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLWNGDGVDLELRLGNHP
         P L  S+++Y  S S P GYFQ+LGD NMN WG+DLSL+I P+KGRR +W+G+G+DLELRLG++P
Subjt:  GPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLWNGDGVDLELRLGNHP

XP_023514446.1 probable transcriptional regulator RABBIT EARS [Cucurbita pepo subsp. pepo]1.2e-4363.25Show/hide
Query:  MDSEKLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSNQVIGSSTFNNIPFF
        MDSEKLGSS SESSS  EEQS+ + EDD SD+F  +KRSY CIFCKRGFTNAQALGGHMNIHRKDR NK  ++ASF   S  ++       STF N   F
Subjt:  MDSEKLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSNQVIGSSTFNNIPFF

Query:  GPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLWNGDGVDLELRLGNHP
         P L  S+++Y  S S P GYFQ+LGD NMNLWG DLSL+I P+KGRR +W+G+G+DLELRLG++P
Subjt:  GPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLWNGDGVDLELRLGNHP

XP_038875027.1 zinc finger protein 6-like [Benincasa hispida]5.5e-7084.12Show/hide
Query:  MDS-EKLGSSCSESSSELEEQSEAIKEDDYSDNFTN--IKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSNQVIGSST-FNN
        MDS +KLGSSCSESSSEL EQSE +KEDDYSD+FTN  IKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPK+ S   SSSSLQSNQ++G ST FN+
Subjt:  MDS-EKLGSSCSESSSELEEQSEAIKEDDYSDNFTN--IKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSNQVIGSST-FNN

Query:  IPFFGPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLWNGDGVDLELRLGNHP
        IP+FGP LG SQ+NYQAS S  HGYFQQLGDFNMNLWGSDLSLQIGPT GRRQLWNGDGVDLELRLG+HP
Subjt:  IPFFGPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLWNGDGVDLELRLGNHP

TrEMBL top hitse value%identityAlignment
A0A0A0LI91 C2H2-type domain-containing protein5.6e-5270.52Show/hide
Query:  SSCSESSS--ELEEQSEAIKED------DYSDNFTN--IKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIA---SFSPSSSSLQS-NQVIGSST
        S+CS+SSS  +LE+     KED      +YSDNF +  IKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPK +   S S SSSSLQS NQ+IG ST
Subjt:  SSCSESSS--ELEEQSEAIKED------DYSDNFTN--IKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIA---SFSPSSSSLQS-NQVIGSST

Query:  FNNIPFFGPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLW-NGDGVDLELRLGNH
        FNNIP+FGP LG SQ+NYQAS S  HG       FNMNLWGSDLSLQIG T GRR+LW NGDGVDLELRLG+H
Subjt:  FNNIPFFGPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLW-NGDGVDLELRLGNH

A0A5N5FEY0 Transcriptional regulator SUPERMAN-like4.9e-2442.86Show/hide
Query:  ESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSN--QVIGSSTFNNIPFFGPPLG----
        E+SS  E+Q   +++DD+    T +KRSYEC FCKRGFTNAQALGGHMNIHRKDR      I+  S  +S+  SN  Q I  ST ++  +   P+     
Subjt:  ESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSN--QVIGSSTFNNIPFFGPPLG----

Query:  ------MSQLNYQ-------ASPSIPHGY----------FQQLGDFNMNLWGSDLSLQIGPTKGRRQLWNGDGVDLELRLGN
              + Q+NYQ       + P IP+GY           Q LG  N  LWG++LSL++   + RR + + D VDLELRLGN
Subjt:  ------MSQLNYQ-------ASPSIPHGY----------FQQLGDFNMNLWGSDLSLQIGPTKGRRQLWNGDGVDLELRLGN

A0A6J1CE07 transcriptional regulator TAC1-like1.1e-3658.96Show/hide
Query:  MDSEKLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKI--ASFSPSSSSLQSNQVIGSSTFNNIP
        MDSEKL  S S+SSSE E++SEAI + D     TN KRSY CIFCKRGFTNAQALGGHMNIHRKDR NKP +I  +S S SSSS   ++ I  S F N  
Subjt:  MDSEKLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKI--ASFSPSSSSLQSNQVIGSSTFNNIP

Query:  FFGPPLGMSQLNYQASPSIPHGYFQQLGDFN--MNLWGSDLSLQIGPTKGRRQ---LW--NGDGVDLELRLGN
        +FG P    +++++ S S P GYFQ+LGD N    LWGSDLSLQI P+KGR +   +W  NG+G+DLELRLG+
Subjt:  FFGPPLGMSQLNYQASPSIPHGYFQQLGDFN--MNLWGSDLSLQIGPTKGRRQ---LW--NGDGVDLELRLGN

A0A6J1EX07 probable transcriptional regulator RABBIT EARS9.5e-4463.25Show/hide
Query:  MDSEKLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSNQVIGSSTFNNIPFF
        MDSEKLGSS SESSS   EQS+ + EDD SD+F  +KRSY CIFCKRGFTNAQALGGHMNIHRKDR NK  +IASF   S  ++       STF N P F
Subjt:  MDSEKLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSNQVIGSSTFNNIPFF

Query:  GPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLWNGDGVDLELRLGNHP
         P L  S+++Y  S S P GYFQ+LGD NMN WG+DLSL+I P+KGRR +W+G+G+DLELRLG++P
Subjt:  GPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLWNGDGVDLELRLGNHP

A0A6J1KKB3 zinc finger protein GIS-like2.3e-4262.65Show/hide
Query:  MDSEKLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSNQVIGSSTFNNIPFF
        MDSEKL SS SESSS  EEQS+ + EDD SD+F  +KRSY CIFCKRGFTNAQALGGHMNIHRKDR NK  +IASF   S   +       STF + P F
Subjt:  MDSEKLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSNQVIGSSTFNNIPFF

Query:  GPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLWNGDGVDLELRLGNHP
         P L  S+++Y+AS S P GYFQ  G+ NMNLWG DLSL+I P+KGRR +W+G+G+DLELRLG++P
Subjt:  GPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLWNGDGVDLELRLGNHP

SwissProt top hitse value%identityAlignment
O80942 Zinc finger protein 101.7e-0532.5Show/hide
Query:  ESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKP--------PKIASFSPSSSSLQSNQVIGSS----TFNNIPF
        +S+ E   +  A  EDD + +     RSY C FC+R F +AQALGGHMN+HR+DR            PK +S     S   S+ +  +S     FN  P 
Subjt:  ESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKP--------PKIASFSPSSSSLQSNQVIGSS----TFNNIPF

Query:  FGPPLGMSQLNYQASPSIPH
        +        ++  +S S+P+
Subjt:  FGPPLGMSQLNYQASPSIPH

Q38895 Transcriptional regulator SUPERMAN1.8e-0747.44Show/hide
Query:  KEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQS----NQVIGSSTFNNIP
        ++ DY   F+   RSY C FCKR F +AQALGGHMN+HR+DR          SPSSSS  S    N     ST  N P
Subjt:  KEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQS----NQVIGSSTFNNIP

Q9LHS9 Probable transcriptional regulator RABBIT EARS1.2e-0661.36Show/hide
Query:  RSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSS
        RSY C FC R F +AQALGGHMN+HR+DR     K  S SPSS+
Subjt:  RSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSS

Q9SLB8 Zinc finger protein 111.7e-0542.62Show/hide
Query:  RSYECIFCKRGFTNAQALGGHMNIHRKDR------------PNKPPKIASFSPSSSSLQSN
        ++Y C FC+R F +AQALGGHMN+HR+DR            P+    IA+ +P+ SS  S+
Subjt:  RSYECIFCKRGFTNAQALGGHMNIHRKDR------------PNKPPKIASFSPSSSSLQSN

Q9SR34 Transcriptional regulator TAC11.8e-0747.83Show/hide
Query:  KLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKI
        K    CS+S S+   Q          D+  N  RSY C FC RGF+NAQALGGHMNIHR+DR     K+
Subjt:  KLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKI

Arabidopsis top hitse value%identityAlignment
AT3G09290.1 telomerase activator11.3e-0847.83Show/hide
Query:  KLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKI
        K    CS+S S+   Q          D+  N  RSY C FC RGF+NAQALGGHMNIHR+DR     K+
Subjt:  KLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKI

AT3G23130.1 C2H2 and C2HC zinc fingers superfamily protein1.3e-0847.44Show/hide
Query:  KEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQS----NQVIGSSTFNNIP
        ++ DY   F+   RSY C FCKR F +AQALGGHMN+HR+DR          SPSSSS  S    N     ST  N P
Subjt:  KEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQS----NQVIGSSTFNNIP

AT3G23140.1 C2H2 and C2HC zinc fingers superfamily protein1.0e-1334.94Show/hide
Query:  KEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFS--PSSSSLQSNQVIGSSTFNNIPFFGPPLGMSQLNYQASPSI-PHGY
        K+ D        +R+Y+C  CKRGFTN QALGGH NIHR++R   P   +S    P S  L S     S+ F N P + P +  S L+  + P I P   
Subjt:  KEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFS--PSSSSLQSNQVIGSSTFNNIPFFGPPLGMSQLNYQASPSI-PHGY

Query:  FQQLGDFNMNLWGS--------DLSLQIG--------------PTKGRRQLWNGDGVDLELRLGNH
         Q  G  + +  G         DL+L +G              P  G  Q  +GD +DL+LRLG H
Subjt:  FQQLGDFNMNLWGS--------DLSLQIG--------------PTKGRRQLWNGDGVDLELRLGNH

AT4G17810.1 C2H2 and C2HC zinc fingers superfamily protein5.8e-0929.44Show/hide
Query:  ELEEQSEAIK----EDDYSDNFTNI---KRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSNQVIGSSTFNNIPFFGPPLGMSQ
        ELE+  E+ +    E D   N +      RSY C FC+R F +AQALGGHMN+HR+DR +      +   S+ +  +    G    N+     PPL  + 
Subjt:  ELEEQSEAIK----EDDYSDNFTNI---KRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSNQVIGSSTFNNIPFFGPPLGMSQ

Query:  LNYQASPS------------IPHGYFQQLGDFNMNLWGS--------DLSLQIGPTKGRRQL-------------------WNGDGVDLELRLGNHP
        L  Q++ S             P G F   GD  +NL+G+          S+   P +   +L                    + D +DLELRLG+HP
Subjt:  LNYQASPS------------IPHGYFQQLGDFNMNLWGS--------DLSLQIGPTKGRRQL-------------------WNGDGVDLELRLGNHP

AT5G43540.1 C2H2 and C2HC zinc fingers superfamily protein9.5e-1256.45Show/hide
Query:  CSESSSELEEQSEAIKEDDYSDN--FTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNK
        C  SSS    ++ A++    S +   T  +R YEC FCKRGFTNAQALGGHMNIHR+DR NK
Subjt:  CSESSSELEEQSEAIKEDDYSDN--FTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCAGAAAAACTAGGAAGTAGCTGCTCAGAGAGTTCAAGTGAATTAGAAGAACAATCAGAGGCAATAAAGGAAGATGATTATTCAGACAATTTCACCAATATTAA
ACGTTCATATGAATGCATATTTTGCAAACGTGGATTCACCAACGCTCAAGCTCTTGGAGGCCACATGAATATTCATAGAAAAGATAGACCCAATAAACCTCCAAAAATAG
CATCTTTTTCTCCTTCTTCTTCTTCTCTTCAAAGCAACCAAGTAATTGGTTCATCCACTTTCAATAATATCCCCTTTTTTGGGCCTCCTTTGGGTATGTCTCAACTGAAT
TATCAAGCTTCGCCTTCTATCCCCCATGGCTACTTCCAACAACTTGGAGATTTTAATATGAACCTTTGGGGGTCAGATTTGAGCCTACAAATTGGACCAACTAAAGGGAG
GAGGCAACTTTGGAATGGTGATGGTGTCGATTTGGAGCTTCGACTTGGTAATCATCCATGA
mRNA sequenceShow/hide mRNA sequence
TTTCTTTTTCCCCCTTCTCCATAAAACCCTAGTTTTCCCTTCCATTTCCCTTGATCTCCCTCTGTTTCCTTCCTTCTTTGAATTGTGTCATACTTCAACTACTCTTTAAA
ACTTTCTTGATGGATTCAGAAAAACTAGGAAGTAGCTGCTCAGAGAGTTCAAGTGAATTAGAAGAACAATCAGAGGCAATAAAGGAAGATGATTATTCAGACAATTTCAC
CAATATTAAACGTTCATATGAATGCATATTTTGCAAACGTGGATTCACCAACGCTCAAGCTCTTGGAGGCCACATGAATATTCATAGAAAAGATAGACCCAATAAACCTC
CAAAAATAGCATCTTTTTCTCCTTCTTCTTCTTCTCTTCAAAGCAACCAAGTAATTGGTTCATCCACTTTCAATAATATCCCCTTTTTTGGGCCTCCTTTGGGTATGTCT
CAACTGAATTATCAAGCTTCGCCTTCTATCCCCCATGGCTACTTCCAACAACTTGGAGATTTTAATATGAACCTTTGGGGGTCAGATTTGAGCCTACAAATTGGACCAAC
TAAAGGGAGGAGGCAACTTTGGAATGGTGATGGTGTCGATTTGGAGCTTCGACTTGGTAATCATCCATGATCGATTCACACTGGCTACATGTCAATCTGGGTATAGCTCG
ACTAGTAATTAACGTATATGTGTTCTTCACCAACAAATCGAAGGTTTGAATATCAATATGCCTTATATGTTATTGAATAATCAAACCCTAAATATGTTCTTAGGGGATTA
ATTTTTTTAATCTTTGTGGATACAAAGCTGACTTTTCTGGTTTAGGGTAATTTGAGTTTCATTAAGAGCTTTGAGTACTTAACCATGTTTTAATTGAGTAAAAGGGTTAT
GATGATATAGATTCTCTTTCATTGC
Protein sequenceShow/hide protein sequence
MDSEKLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSNQVIGSSTFNNIPFFGPPLGMSQLN
YQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLWNGDGVDLELRLGNHP