; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G07230 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G07230
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr06:7635800..7640764
RNA-Seq ExpressionClc06G07230
SyntenyClc06G07230
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
InterPro domainsIPR040381 - Uncharacterized protein At4g14450-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593848.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3684Show/hide
Query:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSS-----HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV
        QPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNW  DS   SS+SS     HHHHHKESEPEKPPVFKKWQHPAAPFHYDSG RAPR FVPV
Subjt:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSS-----HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV
XP_008460625.2 PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis melo]2.6e-3880.91Show/hide
Query:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREA------SSTSSHHH----------HHKESEPEKPPVFKKWQHPAAPFHYDS
        QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNW PDSREA      SS+SSHHH          HHKE E EK PVFKKWQHPAAPFHYDS
Subjt:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREA------SSTSSHHH----------HHKESEPEKPPVFKKWQHPAAPFHYDS

Query:  GPRAPRFVPV
        GPRAPRFVPV
Subjt:  GPRAPRFVPV
XP_022930471.1 uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata]1.1e-3686.6Show/hide
Query:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSS--HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV
        QPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNW  DS   SS+SS  HHHHHKESEPEKPPVFKKWQHPAAPFHYDSG RAPR FVPV
Subjt:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSS--HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV
XP_023000559.1 uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima]1.8e-3684.85Show/hide
Query:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSS----HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV
        QPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNW  DS   SS+SS    HHHHHKESEPEKPPVFKKWQHPAAPFHYDSG RAPR FVPV
Subjt:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSS----HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV
XP_038875425.1 uncharacterized protein At4g14450, chloroplastic-like [Benincasa hispida]3.1e-4496.81Show/hide
Query:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV
        QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNW PDSREASS+SS HHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV
Subjt:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV
TrEMBL top hitse value%identityAlignment
A0A0A0LLJ8 Uncharacterized protein1.3e-3580Show/hide
Query:  PSRLQRRAPASLQINRSDWKVAIPLLSPLVSP-SSPKDIQNWK-PDSREASSTSS----------HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAP
        PSRLQRRAPASLQINRSDWKVAIPLLSPLVSP SSPKDI +W  PDSR+ SST+S          HHHHHKES+PEK PVFKKWQHPAAPFHYDSG RAP
Subjt:  PSRLQRRAPASLQINRSDWKVAIPLLSPLVSP-SSPKDIQNWK-PDSREASSTSS----------HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAP

Query:  RFVPV
        RFVPV
Subjt:  RFVPV
A0A1S3CDB1 uncharacterized protein At4g14450, chloroplastic-like1.2e-3880.91Show/hide
Query:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREA------SSTSSHHH----------HHKESEPEKPPVFKKWQHPAAPFHYDS
        QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNW PDSREA      SS+SSHHH          HHKE E EK PVFKKWQHPAAPFHYDS
Subjt:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREA------SSTSSHHH----------HHKESEPEKPPVFKKWQHPAAPFHYDS

Query:  GPRAPRFVPV
        GPRAPRFVPV
Subjt:  GPRAPRFVPV
A0A6J1ER11 uncharacterized protein At4g14450, chloroplastic-like5.2e-3786.6Show/hide
Query:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSS--HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV
        QPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNW  DS   SS+SS  HHHHHKESEPEKPPVFKKWQHPAAPFHYDSG RAPR FVPV
Subjt:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSS--HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV
A0A6J1H320 uncharacterized protein At4g14450, chloroplastic-like1.2e-3076.34Show/hide
Query:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVP
        QP   + RAPASLQINR DWKVAIPLL+PLVSPSSPK+IQ W P+S E SS SS   +HKESEPEKPPVFKKWQHPAAPF YDSGP  PRF+P
Subjt:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVP
A0A6J1KKB8 uncharacterized protein At4g14450, chloroplastic-like8.9e-3784.85Show/hide
Query:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSS----HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV
        QPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNW  DS   SS+SS    HHHHHKESEPEKPPVFKKWQHPAAPFHYDSG RAPR FVPV
Subjt:  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSS----HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV
SwissProt top hitse value%identityAlignment
Q6NN02 Uncharacterized protein At4g14450, chloroplastic1.3e-0841.67Show/hide
Query:  QPSRLQRRAPASL--QINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV
        Q S+LQRRAP+ +    + S+W VAIPLLSPL    +    Q+  P  +  +          E E +K PVFKKWQHPA+PF Y+     P F+ V
Subjt:  QPSRLQRRAPASL--QINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV
Arabidopsis top hitse value%identityAlignment
AT1G04330.1 unknown protein8.8e-1352.33Show/hide
Query:  SRLQRRAPASLQIN--RSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGP
        SRLQRRAP  L+IN   ++WKVAIPLLSP  SP          P    A          KE+  EKPPVFKKWQHPAAPF+Y   P
Subjt:  SRLQRRAPASLQIN--RSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGP
AT3G23170.1 unknown protein1.7e-1148Show/hide
Query:  QPSRLQRRAPASLQI----NRSDWKVAIPLLSPL-VSP-SSPKDIQNWKPDSREASSTSSHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV
        QPSRL +R PA   +      ++W  AIPLLSPL +SP SSP D    +P   +  ST+           EK PVFKKWQHPAAPF+Y+S    P FVPV
Subjt:  QPSRLQRRAPASLQI----NRSDWKVAIPLLSPL-VSP-SSPKDIQNWKPDSREASSTSSHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV
AT4G14450.1 unknown protein9.1e-1041.67Show/hide
Query:  QPSRLQRRAPASL--QINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV
        Q S+LQRRAP+ +    + S+W VAIPLLSPL    +    Q+  P  +  +          E E +K PVFKKWQHPA+PF Y+     P F+ V
Subjt:  QPSRLQRRAPASL--QINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCTTCCTCATCCTTCTTTTATCTTCTTCCCCCAAATCCCCTTACTCTTCCCTTATGGCGGCCTCACACACACGAATCTCCCAAAGGCATCGAAAATTGGAAGCC
CGATTCCAGAGAAGCTTCTTCCACCTCTTCTCACCACCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCAGGTTTCTAAGAAATGGCAGCATCCGGCGGCTCCTTTTC
ATTACGATTGCCAGCCAAGCCGCCTTCAACGCCGCGCTCCGGCGTCCCTGCAAATCAATCGCTCCGATTGGAAGGTCGCCATCCCTCTCTTGTCCCCCCTCGTCTCTCCT
TCCTCTCCCAAAGACATCCAAAATTGGAAGCCCGATTCCAGAGAAGCTTCTTCCACCTCTTCTCACCACCATCATCATAAAGAATCGGAGCCAGAGAAGCCGCCGGTTTT
TAAGAAATGGCAGCATCCGGCAGCTCCTTTTCATTACGATTCCGGTCCTAGGGCTCCCAGATTCGTACCCGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCTTCCTCATCCTTCTTTTATCTTCTTCCCCCAAATCCCCTTACTCTTCCCTTATGGCGGCCTCACACACACGAATCTCCCAAAGGCATCGAAAATTGGAAGCC
CGATTCCAGAGAAGCTTCTTCCACCTCTTCTCACCACCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCAGGTTTCTAAGAAATGGCAGCATCCGGCGGCTCCTTTTC
ATTACGATTGCCAGCCAAGCCGCCTTCAACGCCGCGCTCCGGCGTCCCTGCAAATCAATCGCTCCGATTGGAAGGTCGCCATCCCTCTCTTGTCCCCCCTCGTCTCTCCT
TCCTCTCCCAAAGACATCCAAAATTGGAAGCCCGATTCCAGAGAAGCTTCTTCCACCTCTTCTCACCACCATCATCATAAAGAATCGGAGCCAGAGAAGCCGCCGGTTTT
TAAGAAATGGCAGCATCCGGCAGCTCCTTTTCATTACGATTCCGGTCCTAGGGCTCCCAGATTCGTACCCGTTTAG
Protein sequenceShow/hide protein sequence
MASSSSFFYLLPPNPLTLPLWRPHTHESPKGIENWKPDSREASSTSSHHHHHKESEPEKPQVSKKWQHPAAPFHYDCQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSP
SSPKDIQNWKPDSREASSTSSHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV